RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 SPATA8Q6RVD6 105 aa8.97□□□□□ -0.97
SCN3B-201ENST00000299333 PLAC4Q8WY50 150 aa8.97□□□□□ -0.97
SCN3B-201ENST00000299333 KRTAP26-1Q6PEX3 210 aa8.97□□□□□ -0.97
SCN3B-201ENST00000299333 SPRR1BP22528 89 aa8.95□□□□□ -0.98
SCN3B-201ENST00000299333 PCNTO95613 3336 aa8.95□□□□□ -0.98
SCN3B-201ENST00000299333 KRTAP1-3Q8IUG1 177 aa8.94□□□□□ -0.98
SCN3B-201ENST00000299333 BPTFQ12830 3046 aa8.93□□□□□ -0.98
SCN3B-201ENST00000299333 PLAC8Q9NZF1 115 aa8.92□□□□□ -0.98
SCN3B-201ENST00000299333 C20orf166-AS1Q96NR2 134 aa8.9□□□□□ -0.98
SCN3B-201ENST00000299333 MGAM2Q2M2H8 2515 aa8.9□□□□□ -0.99
SCN3B-201ENST00000299333 FASNP49327 2511 aaKnown RBP8.88□□□□□ -0.99
SCN3B-201ENST00000299333 M0QZ58 72 aa8.88□□□□□ -0.99
SCN3B-201ENST00000299333 KRTAP1-1Q07627 177 aa8.88□□□□□ -0.99
SCN3B-201ENST00000299333 CEP350Q5VT06 3117 aa8.88□□□□□ -0.99
SCN3B-201ENST00000299333 A8MU10 97 aa8.86□□□□□ -0.99
SCN3B-201ENST00000299333 Q6ZR54 194 aa8.86□□□□□ -0.99
SCN3B-201ENST00000299333 DNAH12Q6ZR08 3092 aa8.83□□□□□ -1
SCN3B-201ENST00000299333 KRTAP29-1A8MX34 341 aaPredicted RBP8.81□□□□□ -1
SCN3B-201ENST00000299333 PRRC2CQ9Y520 2896 aaKnown RBP8.8□□□□□ -1
SCN3B-201ENST00000299333 A8MUU9 505 aa8.72□□□□□ -1.01
SCN3B-201ENST00000299333 EPG5Q9HCE0 2579 aa8.72□□□□□ -1.01
SCN3B-201ENST00000299333 KRTAP1-5Q9BYS1 174 aa8.7□□□□□ -1.02
SCN3B-201ENST00000299333 PANO1I0J062 215 aa8.69□□□□□ -1.02
SCN3B-201ENST00000299333 ATRQ13535 2644 aa8.67□□□□□ -1.02
SCN3B-201ENST00000299333 A0A087X002 238 aa8.67□□□□□ -1.02
SCN3B-201ENST00000299333 NOTCH2NLQ7Z3S9 236 aa8.67□□□□□ -1.02
SCN3B-201ENST00000299333 KRTAP4-16G5E9R7 235 aaPredicted RBP8.67□□□□□ -1.02
SCN3B-201ENST00000299333 C10orf95Q9H7T3 257 aa8.63□□□□□ -1.03
SCN3B-201ENST00000299333 HECTD1Q9ULT8 2610 aa8.6□□□□□ -1.03
SCN3B-201ENST00000299333 DMBT1Q9UGM3 2413 aaPredicted RBP8.58□□□□□ -1.04
SCN3B-201ENST00000299333 KRTAP10-1P60331 282 aa8.56□□□□□ -1.04
SCN3B-201ENST00000299333 LCE6AA0A183 80 aa8.55□□□□□ -1.04
SCN3B-201ENST00000299333 KRTAP11-1Q8IUC1 163 aa8.54□□□□□ -1.04
SCN3B-201ENST00000299333 FLNAP21333 2647 aaKnown RBP8.53□□□□□ -1.04
SCN3B-201ENST00000299333 KRTAP10-2P60368 255 aa8.53□□□□□ -1.04
SCN3B-201ENST00000299333 MAST4O15021 2626 aa8.53□□□□□ -1.04
SCN3B-201ENST00000299333 Q5VSD8 79 aa8.51□□□□□ -1.05
SCN3B-201ENST00000299333 FLNBO75369 2602 aaKnown RBP8.51□□□□□ -1.05
SCN3B-201ENST00000299333 NBEAL1Q6ZS30 2694 aa8.5□□□□□ -1.05
SCN3B-201ENST00000299333 AKAP13Q12802 2813 aa8.49□□□□□ -1.05
SCN3B-201ENST00000299333 ITPR3Q14573 2671 aa8.46□□□□□ -1.05
SCN3B-201ENST00000299333 BRCA2P51587 3418 aa8.44□□□□□ -1.06
SCN3B-201ENST00000299333 C5orf42Q9H799 3197 aa8.43□□□□□ -1.06
SCN3B-201ENST00000299333 STAB1Q9NY15 2570 aa8.43□□□□□ -1.06
SCN3B-201ENST00000299333 CHD6Q8TD26 2715 aa8.4□□□□□ -1.06
SCN3B-201ENST00000299333 MKI67P46013 3256 aaKnown RBP8.4□□□□□ -1.06
SCN3B-201ENST00000299333 RANBP2P49792 3224 aaKnown RBP8.37□□□□□ -1.07
SCN3B-201ENST00000299333 STAB2Q8WWQ8 2551 aa8.35□□□□□ -1.07
SCN3B-201ENST00000299333 LAMA3Q16787 3333 aa8.33□□□□□ -1.08
SCN3B-201ENST00000299333 LAMA2P24043 3122 aaKnown RBP8.31□□□□□ -1.08
SCN3B-201ENST00000299333 UNC79Q9P2D8 2635 aa8.31□□□□□ -1.08
SCN3B-201ENST00000299333 A0A0C4DFX4 3053 aa8.3□□□□□ -1.08
SCN3B-201ENST00000299333 KRTAP7-1Q8IUC3 87 aa8.3□□□□□ -1.08
SCN3B-201ENST00000299333 NOTCH1P46531 2555 aa8.27□□□□□ -1.09
SCN3B-201ENST00000299333 GCN1Q92616 2671 aaKnown RBP8.27□□□□□ -1.09
SCN3B-201ENST00000299333 CENPEQ02224 2701 aa8.26□□□□□ -1.09
SCN3B-201ENST00000299333 TNP1P09430 55 aa8.26□□□□□ -1.09
SCN3B-201ENST00000299333 CFAP54Q96N23 3096 aa8.26□□□□□ -1.09
SCN3B-201ENST00000299333 PP632Q6XCG6 107 aa8.26□□□□□ -1.09
SCN3B-201ENST00000299333 P0C880 135 aa8.25□□□□□ -1.09
SCN3B-201ENST00000299333 CFAP46Q8IYW2 2715 aa8.24□□□□□ -1.09
SCN3B-201ENST00000299333 UNC80Q8N2C7 3258 aa8.22□□□□□ -1.09
SCN3B-201ENST00000299333 RPS29P62273 56 aaKnown RBP8.22□□□□□ -1.09
SCN3B-201ENST00000299333 KRTAP13-2Q52LG2 175 aa8.21□□□□□ -1.09
SCN3B-201ENST00000299333 CHD7Q9P2D1 2997 aa8.21□□□□□ -1.1
SCN3B-201ENST00000299333 PRUNE2Q8WUY3 3088 aa8.19□□□□□ -1.1
SCN3B-201ENST00000299333 HTTP42858 3142 aa8.19□□□□□ -1.1
SCN3B-201ENST00000299333 KRTAP13-1Q8IUC0 172 aa8.16□□□□□ -1.1
SCN3B-201ENST00000299333 TEX15Q9BXT5 2789 aa8.15□□□□□ -1.1
SCN3B-201ENST00000299333 NBEAL2Q6ZNJ1 2754 aa8.14□□□□□ -1.11
SCN3B-201ENST00000299333 HELZ2Q9BYK8 2649 aaKnown RBP8.14□□□□□ -1.11
SCN3B-201ENST00000299333 XIRP2A4UGR9 3374 aa8.12□□□□□ -1.11
SCN3B-201ENST00000299333 CHD9Q3L8U1 2897 aa8.11□□□□□ -1.11
SCN3B-201ENST00000299333 KRTAP10-8P60410 259 aa8.11□□□□□ -1.11
SCN3B-201ENST00000299333 Q6ZRN7 208 aaPredicted RBP8.1□□□□□ -1.11
SCN3B-201ENST00000299333 COL6A5A8TX70 2615 aa8.08□□□□□ -1.12
SCN3B-201ENST00000299333 H0YAA0 97 aa8.07□□□□□ -1.12
SCN3B-201ENST00000299333 TEP1Q99973 2627 aaKnown RBP8.04□□□□□ -1.12
SCN3B-201ENST00000299333 CDH23Q9H251 3354 aa8.01□□□□□ -1.13
SCN3B-201ENST00000299333 FREM2Q5SZK8 3169 aa7.99□□□□□ -1.13
SCN3B-201ENST00000299333 BAHCC1Q9P281 2608 aa7.96□□□□□ -1.14
SCN3B-201ENST00000299333 TRIOO75962 3097 aa7.95□□□□□ -1.14
SCN3B-201ENST00000299333 WDFY4Q6ZS81 3184 aa7.94□□□□□ -1.14
SCN3B-201ENST00000299333 TRANK1O15050 2925 aa7.94□□□□□ -1.14
SCN3B-201ENST00000299333 MGAQ8IWI9 3026 aa7.93□□□□□ -1.14
SCN3B-201ENST00000299333 NSD1Q96L73 2696 aaPredicted RBP7.9□□□□□ -1.14
SCN3B-201ENST00000299333 CELSR3Q9NYQ7 3312 aa7.86□□□□□ -1.15
SCN3B-201ENST00000299333 VPS13AQ96RL7 3174 aa7.83□□□□□ -1.16
SCN3B-201ENST00000299333 MAP1AP78559 2803 aaPredicted RBP7.81□□□□□ -1.16
SCN3B-201ENST00000299333 SETXQ7Z333 2677 aaKnown RBP7.81□□□□□ -1.16
SCN3B-201ENST00000299333 DNAH14Q0VDD8 3507 aa7.8□□□□□ -1.16
SCN3B-201ENST00000299333 SZT2Q5T011 3432 aa7.8□□□□□ -1.16
SCN3B-201ENST00000299333 FRYQ5TBA9 3013 aa7.78□□□□□ -1.16
SCN3B-201ENST00000299333 A0A1B0GVY2 172 aa7.78□□□□□ -1.16
SCN3B-201ENST00000299333 VCANP13611 3396 aa7.78□□□□□ -1.16
SCN3B-201ENST00000299333 UBR5O95071 2799 aaPredicted RBP7.78□□□□□ -1.16
SCN3B-201ENST00000299333 ITPR1Q14643 2758 aa7.77□□□□□ -1.17
SCN3B-201ENST00000299333 ZNF292O60281 2723 aa7.75□□□□□ -1.17
SCN3B-201ENST00000299333 XP32Q5T750 250 aa7.74□□□□□ -1.17
SCN3B-201ENST00000299333 APCP25054 2843 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms