RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RBM3P98179 157 aaKnown RBP8.64□□□□□ -1.03
SS18-201ENST00000269137 ZNF861PO60384 105 aa8.63□□□□□ -1.03
SS18-201ENST00000269137 CCKP06307 115 aa8.62□□□□□ -1.03
SS18-201ENST00000269137 IMUPQ9GZP8 106 aa8.62□□□□□ -1.03
SS18-201ENST00000269137 SPRR1BP22528 89 aa8.61□□□□□ -1.03
SS18-201ENST00000269137 HAMPP81172 84 aa8.61□□□□□ -1.03
SS18-201ENST00000269137 LOC110117498A0A087WWA1 95 aa8.61□□□□□ -1.03
SS18-201ENST00000269137 IGLV7-43P04211 117 aa8.61□□□□□ -1.03
SS18-201ENST00000269137 PDE6GP18545 87 aa8.6□□□□□ -1.03
SS18-201ENST00000269137 SMIM29Q86T20 159 aa8.6□□□□□ -1.03
SS18-201ENST00000269137 DSCR8Q96T75 97 aa8.59□□□□□ -1.03
SS18-201ENST00000269137 ANAPC13Q9BS18 74 aa8.59□□□□□ -1.03
SS18-201ENST00000269137 LINC00846Q9NV44 126 aa8.59□□□□□ -1.03
SS18-201ENST00000269137 APOBP04114 4563 aaKnown RBP8.59□□□□□ -1.03
SS18-201ENST00000269137 TRBV7-4A0A0J9YYF1 115 aa8.59□□□□□ -1.03
SS18-201ENST00000269137 Q6ZQT0 140 aa8.58□□□□□ -1.04
SS18-201ENST00000269137 C3orf22Q8N5N4 141 aa8.58□□□□□ -1.04
SS18-201ENST00000269137 VPS13BQ7Z7G8 4022 aa8.58□□□□□ -1.04
SS18-201ENST00000269137 ZNF706Q9Y5V0 76 aaPredicted RBP8.57□□□□□ -1.04
SS18-201ENST00000269137 SPRR4Q96PI1 79 aa8.56□□□□□ -1.04
SS18-201ENST00000269137 Q6JHZ5 121 aa8.55□□□□□ -1.04
SS18-201ENST00000269137 LINC00483Q53H64 154 aa8.54□□□□□ -1.04
SS18-201ENST00000269137 IGLV8-61A0A075B6I0 122 aa8.54□□□□□ -1.04
SS18-201ENST00000269137 F8WEM9 126 aa8.54□□□□□ -1.04
SS18-201ENST00000269137 FAM236AA0A1B0GUQ0 79 aa8.51□□□□□ -1.05
SS18-201ENST00000269137 FAM236BA0A1B0GV22 79 aa8.51□□□□□ -1.05
SS18-201ENST00000269137 IGKV3D-7A0A0C4DH55 119 aa8.5□□□□□ -1.05
SS18-201ENST00000269137 RPL37AP61513 92 aaKnown RBP8.47□□□□□ -1.05
SS18-201ENST00000269137 UBL5Q9BZL1 73 aa8.47□□□□□ -1.05
SS18-201ENST00000269137 FAT1Q14517 4588 aa8.46□□□□□ -1.05
SS18-201ENST00000269137 A0A1B0GW54 56 aa8.46□□□□□ -1.06
SS18-201ENST00000269137 ATP5EP2Q5VTU8 51 aa8.46□□□□□ -1.06
SS18-201ENST00000269137 IGFL1Q6UW32 110 aa8.46□□□□□ -1.06
SS18-201ENST00000269137 A0A1W2PNM2 257 aa8.45□□□□□ -1.06
SS18-201ENST00000269137 HIST1H4AP62805 103 aaKnown RBP8.45□□□□□ -1.06
SS18-201ENST00000269137 Q8NBF4 154 aa8.45□□□□□ -1.06
SS18-201ENST00000269137 SMR3BP02814 79 aaPredicted RBP8.45□□□□□ -1.06
SS18-201ENST00000269137 CCDC179H3BU77 68 aa8.43□□□□□ -1.06
SS18-201ENST00000269137 ANAPC11Q9NYG5 84 aa8.43□□□□□ -1.06
SS18-201ENST00000269137 IGLV9-49A0A0B4J1Y8 123 aa8.41□□□□□ -1.06
SS18-201ENST00000269137 CDK2AP2O75956 126 aa8.41□□□□□ -1.06
SS18-201ENST00000269137 CRYGAP11844 174 aa8.41□□□□□ -1.06
SS18-201ENST00000269137 SPINK6Q6UWN8 80 aa8.41□□□□□ -1.06
SS18-201ENST00000269137 A0A087WVE0 104 aa8.4□□□□□ -1.07
SS18-201ENST00000269137 A0A0G2JQZ4 141 aa8.4□□□□□ -1.07
SS18-201ENST00000269137 KRTAP10-4P60372 401 aaPredicted RBP8.4□□□□□ -1.07
SS18-201ENST00000269137 FAM229BQ4G0N7 80 aa8.4□□□□□ -1.07
SS18-201ENST00000269137 C9orf153Q5TBE3 101 aa8.4□□□□□ -1.07
SS18-201ENST00000269137 Q6ZVQ6 151 aa8.4□□□□□ -1.07
SS18-201ENST00000269137 ATOX1O00244 68 aa8.39□□□□□ -1.07
SS18-201ENST00000269137 HSPG2P98160 4391 aa8.39□□□□□ -1.07
SS18-201ENST00000269137 KRTAP1-4P0C5Y4 121 aa8.38□□□□□ -1.07
SS18-201ENST00000269137 MOBPQ13875 183 aa8.38□□□□□ -1.07
SS18-201ENST00000269137 RYR1P21817 5038 aa8.37□□□□□ -1.07
SS18-201ENST00000269137 SSBP3-AS1Q7Z2R9 100 aa8.35□□□□□ -1.07
SS18-201ENST00000269137 CXCL6P80162 114 aa8.34□□□□□ -1.07
SS18-201ENST00000269137 A0A087X002 238 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 FAM229AH3BQW9 127 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 UQCRQO14949 82 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 NREPQ16612 68 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 EPPK1P58107 5090 aaKnown RBP8.33□□□□□ -1.08
SS18-201ENST00000269137 PLA2G1BP04054 148 aaKnown RBP8.33□□□□□ -1.08
SS18-201ENST00000269137 COX7CP15954 63 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 PKHD1L1Q86WI1 4243 aa8.33□□□□□ -1.08
SS18-201ENST00000269137 KRTAP13-2Q52LG2 175 aa8.32□□□□□ -1.08
SS18-201ENST00000269137 A0A087WSZ3 146 aa8.31□□□□□ -1.08
SS18-201ENST00000269137 CD164Q04900 197 aa8.29□□□□□ -1.08
SS18-201ENST00000269137 SERP2Q8N6R1 65 aa8.29□□□□□ -1.08
SS18-201ENST00000269137 KIAA1109Q2LD37 5005 aa8.28□□□□□ -1.08
SS18-201ENST00000269137 Q5VSD8 79 aa8.26□□□□□ -1.09
SS18-201ENST00000269137 SS18L2Q9UHA2 77 aa8.26□□□□□ -1.09
SS18-201ENST00000269137 BPY2O14599 106 aa8.25□□□□□ -1.09
SS18-201ENST00000269137 HRCT1Q6UXD1 115 aa8.25□□□□□ -1.09
SS18-201ENST00000269137 TYMSOSQ8TAI1 123 aa8.23□□□□□ -1.09
SS18-201ENST00000269137 LINC00472Q9H8W2 130 aa8.22□□□□□ -1.09
SS18-201ENST00000269137 PRR26Q8N8Z3 221 aa8.22□□□□□ -1.09
SS18-201ENST00000269137 Q8N1X5 172 aa8.2□□□□□ -1.1
SS18-201ENST00000269137 IGKV4-1P06312 121 aa8.19□□□□□ -1.1
SS18-201ENST00000269137 KRTAP17-1Q9BYP8 105 aa8.19□□□□□ -1.1
SS18-201ENST00000269137 SMIM20Q8N5G0 67 aa8.19□□□□□ -1.1
SS18-201ENST00000269137 DSCR10P59022 87 aa8.18□□□□□ -1.1
SS18-201ENST00000269137 Q5XG85 94 aa8.18□□□□□ -1.1
SS18-201ENST00000269137 TRAV7A0A075B6U4 112 aa8.17□□□□□ -1.1
SS18-201ENST00000269137 Q96NJ1 140 aa8.17□□□□□ -1.1
SS18-201ENST00000269137 J3KT08 172 aa8.17□□□□□ -1.1
SS18-201ENST00000269137 ASB16-AS1Q495Z4 193 aa8.17□□□□□ -1.1
SS18-201ENST00000269137 Q8N9L7 120 aa8.17□□□□□ -1.1
SS18-201ENST00000269137 DEFB116Q30KQ4 102 aa8.16□□□□□ -1.1
SS18-201ENST00000269137 C4orf48Q5BLP8 95 aa8.16□□□□□ -1.1
SS18-201ENST00000269137 SPINK1P00995 79 aa8.15□□□□□ -1.11
SS18-201ENST00000269137 CYSTM1Q9H1C7 97 aa8.15□□□□□ -1.11
SS18-201ENST00000269137 SPAG11AQ6PDA7 123 aa8.14□□□□□ -1.11
SS18-201ENST00000269137 LINC00304Q8N9R0 145 aa8.14□□□□□ -1.11
SS18-201ENST00000269137 LIMD2Q9BT23 127 aa8.13□□□□□ -1.11
SS18-201ENST00000269137 A8MWP4 228 aa8.12□□□□□ -1.11
SS18-201ENST00000269137 K7EQZ3 153 aa8.12□□□□□ -1.11
SS18-201ENST00000269137 RPS29P62273 56 aaKnown RBP8.12□□□□□ -1.11
SS18-201ENST00000269137 LRP1Q07954 4544 aaKnown RBP8.11□□□□□ -1.11
SS18-201ENST00000269137 FAT3Q8TDW7 4589 aa8.11□□□□□ -1.11
SS18-201ENST00000269137 TNXBP22105 4242 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms