RNA–Protein interactions for RNA: ENST00000267970.8

TSPAN3-201, Transcript of tetraspanin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN3, Length 6,467 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-201ENST00000267970 SPATA8Q6RVD6 105 aa10.2□□□□□ -0.78
TSPAN3-201ENST00000267970 MKI67P46013 3256 aaKnown RBP10.19□□□□□ -0.78
TSPAN3-201ENST00000267970 FREM2Q5SZK8 3169 aa10.17□□□□□ -0.78
TSPAN3-201ENST00000267970 H1FX-AS1Q4G0G2 97 aa10.17□□□□□ -0.78
TSPAN3-201ENST00000267970 LAMA2P24043 3122 aaKnown RBP10.14□□□□□ -0.79
TSPAN3-201ENST00000267970 HECTD1Q9ULT8 2610 aa10.14□□□□□ -0.79
TSPAN3-201ENST00000267970 LINC00472Q9H8W2 130 aa10.13□□□□□ -0.79
TSPAN3-201ENST00000267970 RPL37P61927 97 aaKnown RBP10.12□□□□□ -0.79
TSPAN3-201ENST00000267970 XIRP2A4UGR9 3374 aa10.11□□□□□ -0.79
TSPAN3-201ENST00000267970 M0QZ58 72 aa10.09□□□□□ -0.79
TSPAN3-201ENST00000267970 KRTAP16-1A8MUX0 517 aa10.09□□□□□ -0.79
TSPAN3-201ENST00000267970 KRTAP1-5Q9BYS1 174 aa10.08□□□□□ -0.8
TSPAN3-201ENST00000267970 PLAC8Q9NZF1 115 aa10.08□□□□□ -0.8
TSPAN3-201ENST00000267970 KRTAP26-1Q6PEX3 210 aa10.08□□□□□ -0.8
TSPAN3-201ENST00000267970 FLG2Q5D862 2391 aaPredicted RBP10.07□□□□□ -0.8
TSPAN3-201ENST00000267970 EPG5Q9HCE0 2579 aa10.06□□□□□ -0.8
TSPAN3-201ENST00000267970 SPRR1AP35321 89 aa10.05□□□□□ -0.8
TSPAN3-201ENST00000267970 ATRQ13535 2644 aa10.02□□□□□ -0.81
TSPAN3-201ENST00000267970 CELSR3Q9NYQ7 3312 aa10.01□□□□□ -0.81
TSPAN3-201ENST00000267970 ADM2Q7Z4H4 148 aa10.01□□□□□ -0.81
TSPAN3-201ENST00000267970 BRCA2P51587 3418 aa9.99□□□□□ -0.81
TSPAN3-201ENST00000267970 KRTAP10-2P60368 255 aa9.98□□□□□ -0.81
TSPAN3-201ENST00000267970 TRIOO75962 3097 aa9.98□□□□□ -0.81
TSPAN3-201ENST00000267970 FLNAP21333 2647 aaKnown RBP9.97□□□□□ -0.81
TSPAN3-201ENST00000267970 CHD7Q9P2D1 2997 aa9.96□□□□□ -0.81
TSPAN3-201ENST00000267970 PANO1I0J062 215 aa9.95□□□□□ -0.82
TSPAN3-201ENST00000267970 KRTAP10-1P60331 282 aa9.95□□□□□ -0.82
TSPAN3-201ENST00000267970 AKAP13Q12802 2813 aa9.95□□□□□ -0.82
TSPAN3-201ENST00000267970 Q5VSD8 79 aa9.95□□□□□ -0.82
TSPAN3-201ENST00000267970 FLNBO75369 2602 aaKnown RBP9.94□□□□□ -0.82
TSPAN3-201ENST00000267970 ITPR3Q14573 2671 aa9.93□□□□□ -0.82
TSPAN3-201ENST00000267970 A0A087X002 238 aa9.92□□□□□ -0.82
TSPAN3-201ENST00000267970 NOTCH2NLQ7Z3S9 236 aa9.92□□□□□ -0.82
TSPAN3-201ENST00000267970 A8MU10 97 aa9.91□□□□□ -0.82
TSPAN3-201ENST00000267970 NDUFAF8A1L188 74 aa9.91□□□□□ -0.82
TSPAN3-201ENST00000267970 LAMA3Q16787 3333 aa9.91□□□□□ -0.82
TSPAN3-201ENST00000267970 Q6ZR54 194 aa9.9□□□□□ -0.82
TSPAN3-201ENST00000267970 C20orf166-AS1Q96NR2 134 aa9.9□□□□□ -0.83
TSPAN3-201ENST00000267970 PLAC4Q8WY50 150 aa9.88□□□□□ -0.83
TSPAN3-201ENST00000267970 CHD6Q8TD26 2715 aa9.87□□□□□ -0.83
TSPAN3-201ENST00000267970 SPRR1BP22528 89 aa9.86□□□□□ -0.83
TSPAN3-201ENST00000267970 MAST4O15021 2626 aa9.83□□□□□ -0.84
TSPAN3-201ENST00000267970 RANBP2P49792 3224 aaKnown RBP9.82□□□□□ -0.84
TSPAN3-201ENST00000267970 KRTAP25-1Q3LHN0 102 aa9.82□□□□□ -0.84
TSPAN3-201ENST00000267970 DNAH14Q0VDD8 3507 aa9.81□□□□□ -0.84
TSPAN3-201ENST00000267970 UNC80Q8N2C7 3258 aa9.81□□□□□ -0.84
TSPAN3-201ENST00000267970 MGAQ8IWI9 3026 aa9.8□□□□□ -0.84
TSPAN3-201ENST00000267970 SEC61BP60468 96 aaKnown RBP9.78□□□□□ -0.84
TSPAN3-201ENST00000267970 VPS13AQ96RL7 3174 aa9.78□□□□□ -0.84
TSPAN3-201ENST00000267970 PRUNE2Q8WUY3 3088 aa9.76□□□□□ -0.85
TSPAN3-201ENST00000267970 WDFY4Q6ZS81 3184 aa9.76□□□□□ -0.85
TSPAN3-201ENST00000267970 A6NN06 94 aa9.75□□□□□ -0.85
TSPAN3-201ENST00000267970 KRTAP11-1Q8IUC1 163 aa9.73□□□□□ -0.85
TSPAN3-201ENST00000267970 KRTAP29-1A8MX34 341 aaPredicted RBP9.73□□□□□ -0.85
TSPAN3-201ENST00000267970 NBEAL1Q6ZS30 2694 aa9.71□□□□□ -0.86
TSPAN3-201ENST00000267970 CFAP46Q8IYW2 2715 aa9.69□□□□□ -0.86
TSPAN3-201ENST00000267970 KRTAP4-16G5E9R7 235 aaPredicted RBP9.68□□□□□ -0.86
TSPAN3-201ENST00000267970 CDH23Q9H251 3354 aa9.68□□□□□ -0.86
TSPAN3-201ENST00000267970 DMBT1Q9UGM3 2413 aaPredicted RBP9.67□□□□□ -0.86
TSPAN3-201ENST00000267970 CENPEQ02224 2701 aa9.66□□□□□ -0.86
TSPAN3-201ENST00000267970 TEX15Q9BXT5 2789 aa9.65□□□□□ -0.87
TSPAN3-201ENST00000267970 REV3LO60673 3130 aa9.64□□□□□ -0.87
TSPAN3-201ENST00000267970 SZT2Q5T011 3432 aa9.62□□□□□ -0.87
TSPAN3-201ENST00000267970 C10orf95Q9H7T3 257 aa9.62□□□□□ -0.87
TSPAN3-201ENST00000267970 ASB16-AS1Q495Z4 193 aa9.62□□□□□ -0.87
TSPAN3-201ENST00000267970 HTTP42858 3142 aa9.61□□□□□ -0.87
TSPAN3-201ENST00000267970 FRYQ5TBA9 3013 aa9.6□□□□□ -0.87
TSPAN3-201ENST00000267970 NBEAL2Q6ZNJ1 2754 aa9.59□□□□□ -0.87
TSPAN3-201ENST00000267970 GCN1Q92616 2671 aaKnown RBP9.59□□□□□ -0.87
TSPAN3-201ENST00000267970 HELZ2Q9BYK8 2649 aaKnown RBP9.57□□□□□ -0.88
TSPAN3-201ENST00000267970 A8MUU9 505 aa9.57□□□□□ -0.88
TSPAN3-201ENST00000267970 STAB1Q9NY15 2570 aa9.55□□□□□ -0.88
TSPAN3-201ENST00000267970 LCE6AA0A183 80 aa9.53□□□□□ -0.88
TSPAN3-201ENST00000267970 UNC79Q9P2D8 2635 aa9.51□□□□□ -0.89
TSPAN3-201ENST00000267970 KALRNO60229 2985 aa9.49□□□□□ -0.89
TSPAN3-201ENST00000267970 COL6A3P12111 3177 aa9.49□□□□□ -0.89
TSPAN3-201ENST00000267970 KRTAP7-1Q8IUC3 87 aa9.49□□□□□ -0.89
TSPAN3-201ENST00000267970 CHD9Q3L8U1 2897 aa9.48□□□□□ -0.89
TSPAN3-201ENST00000267970 VCANP13611 3396 aa9.48□□□□□ -0.89
TSPAN3-201ENST00000267970 MAP1AP78559 2803 aaPredicted RBP9.47□□□□□ -0.89
TSPAN3-201ENST00000267970 CFAP47Q6ZTR5 3102 aa9.47□□□□□ -0.89
TSPAN3-201ENST00000267970 TEP1Q99973 2627 aaKnown RBP9.45□□□□□ -0.9
TSPAN3-201ENST00000267970 STAB2Q8WWQ8 2551 aa9.43□□□□□ -0.9
TSPAN3-201ENST00000267970 NOTCH1P46531 2555 aa9.43□□□□□ -0.9
TSPAN3-201ENST00000267970 COL6A5A8TX70 2615 aa9.41□□□□□ -0.9
TSPAN3-201ENST00000267970 TRANK1O15050 2925 aa9.4□□□□□ -0.9
TSPAN3-201ENST00000267970 KRTAP13-2Q52LG2 175 aa9.39□□□□□ -0.91
TSPAN3-201ENST00000267970 DMXL2Q8TDJ6 3036 aa9.36□□□□□ -0.91
TSPAN3-201ENST00000267970 ASH1LQ9NR48 2969 aaKnown RBP9.3□□□□□ -0.92
TSPAN3-201ENST00000267970 LAMA1P25391 3075 aa9.3□□□□□ -0.92
TSPAN3-201ENST00000267970 TNP1P09430 55 aa9.28□□□□□ -0.92
TSPAN3-201ENST00000267970 DSPP15924 2871 aaKnown RBP9.26□□□□□ -0.93
TSPAN3-201ENST00000267970 SPEGQ15772 3267 aa9.26□□□□□ -0.93
TSPAN3-201ENST00000267970 Q6ZRN7 208 aaPredicted RBP9.26□□□□□ -0.93
TSPAN3-201ENST00000267970 A0A1B0GVY2 172 aa9.24□□□□□ -0.93
TSPAN3-201ENST00000267970 LRBAP50851 2863 aa9.22□□□□□ -0.93
TSPAN3-201ENST00000267970 CRYBG3Q68DQ2 2970 aa9.21□□□□□ -0.94
TSPAN3-201ENST00000267970 SETXQ7Z333 2677 aaKnown RBP9.21□□□□□ -0.94
TSPAN3-201ENST00000267970 BAHCC1Q9P281 2608 aa9.18□□□□□ -0.94
TSPAN3-201ENST00000267970 BOD1L1Q8NFC6 3051 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms