RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 RTL8CO15255 209 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 LINC00476Q8WZB0 136 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 SPRR4Q96PI1 79 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 STARD9Q9P2P6 4700 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 BPY2O14599 106 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 BCE1O60756 84 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 C1orf134Q5TEV5 83 aa8.04□□□□□ -1.12
SPTLC1-201ENST00000262554 IGLV8-61A0A075B6I0 122 aa8.02□□□□□ -1.12
SPTLC1-201ENST00000262554 LY6G6CO95867 125 aa8.02□□□□□ -1.12
SPTLC1-201ENST00000262554 SS18L2Q9UHA2 77 aa8.02□□□□□ -1.13
SPTLC1-201ENST00000262554 CRYGAP11844 174 aa8.01□□□□□ -1.13
SPTLC1-201ENST00000262554 SPRR1BP22528 89 aa8.01□□□□□ -1.13
SPTLC1-201ENST00000262554 KRTAP21-3Q3LHN1 58 aa8.01□□□□□ -1.13
SPTLC1-201ENST00000262554 IGFL1Q6UW32 110 aa8.01□□□□□ -1.13
SPTLC1-201ENST00000262554 SMIM20Q8N5G0 67 aa8□□□□□ -1.13
SPTLC1-201ENST00000262554 IGLV5-52A0A0A0MRZ9 124 aa7.99□□□□□ -1.13
SPTLC1-201ENST00000262554 IGKV4-1P06312 121 aa7.99□□□□□ -1.13
SPTLC1-201ENST00000262554 KRTAP13-1Q8IUC0 172 aa7.99□□□□□ -1.13
SPTLC1-201ENST00000262554 VPS13DQ5THJ4 4388 aa7.98□□□□□ -1.13
SPTLC1-201ENST00000262554 Q8N9L7 120 aa7.98□□□□□ -1.13
SPTLC1-201ENST00000262554 TRAV7A0A075B6U4 112 aa7.97□□□□□ -1.13
SPTLC1-201ENST00000262554 WWC2-AS2Q96NR7 200 aa7.97□□□□□ -1.13
SPTLC1-201ENST00000262554 A0A0G2JQZ4 141 aa7.96□□□□□ -1.13
SPTLC1-201ENST00000262554 PLAC8Q9NZF1 115 aa7.96□□□□□ -1.14
SPTLC1-201ENST00000262554 DNHD1Q96M86 4753 aa7.94□□□□□ -1.14
SPTLC1-201ENST00000262554 A0A087WSZ3 146 aa7.92□□□□□ -1.14
SPTLC1-201ENST00000262554 PSORS1C2Q9UIG4 136 aa7.92□□□□□ -1.14
SPTLC1-201ENST00000262554 FBN3Q75N90 2809 aa7.9□□□□□ -1.14
SPTLC1-201ENST00000262554 CYSTM1Q9H1C7 97 aa7.9□□□□□ -1.14
SPTLC1-201ENST00000262554 ZNF706Q9Y5V0 76 aaPredicted RBP7.9□□□□□ -1.14
SPTLC1-201ENST00000262554 DSCR10P59022 87 aa7.89□□□□□ -1.15
SPTLC1-201ENST00000262554 C20orf197Q8N268 126 aa7.89□□□□□ -1.15
SPTLC1-201ENST00000262554 TGP01266 2768 aa7.88□□□□□ -1.15
SPTLC1-201ENST00000262554 LINC00483Q53H64 154 aa7.87□□□□□ -1.15
SPTLC1-201ENST00000262554 K7EQZ3 153 aa7.87□□□□□ -1.15
SPTLC1-201ENST00000262554 TMEM258P61165 79 aa7.87□□□□□ -1.15
SPTLC1-201ENST00000262554 KMT2AQ03164 3969 aa7.87□□□□□ -1.15
SPTLC1-201ENST00000262554 ZNF861PO60384 105 aa7.86□□□□□ -1.15
SPTLC1-201ENST00000262554 SRRM2Q9UQ35 2752 aaKnown RBP7.86□□□□□ -1.15
SPTLC1-201ENST00000262554 IGLV9-49A0A0B4J1Y8 123 aa7.85□□□□□ -1.15
SPTLC1-201ENST00000262554 RPL37AP61513 92 aaKnown RBP7.84□□□□□ -1.15
SPTLC1-201ENST00000262554 DEFB116Q30KQ4 102 aa7.84□□□□□ -1.15
SPTLC1-201ENST00000262554 OCR1Q9BZK8 76 aa7.84□□□□□ -1.15
SPTLC1-201ENST00000262554 HECTD4Q9Y4D8 3996 aa7.84□□□□□ -1.15
SPTLC1-201ENST00000262554 KRTAP10-2P60368 255 aa7.83□□□□□ -1.16
SPTLC1-201ENST00000262554 KLKP1Q107X0 134 aa7.83□□□□□ -1.16
SPTLC1-201ENST00000262554 HCG22E2RYF7 251 aa7.81□□□□□ -1.16
SPTLC1-201ENST00000262554 IGLV7-43P04211 117 aa7.81□□□□□ -1.16
SPTLC1-201ENST00000262554 LINC00472Q9H8W2 130 aa7.8□□□□□ -1.16
SPTLC1-201ENST00000262554 SNURFQ9Y675 71 aa7.8□□□□□ -1.16
SPTLC1-201ENST00000262554 TMEM254Q8TBM7 123 aa7.79□□□□□ -1.16
SPTLC1-201ENST00000262554 CIRBP-AS1Q8TBR5 109 aa7.79□□□□□ -1.16
SPTLC1-201ENST00000262554 FAM30AQ9NZY2 134 aa7.79□□□□□ -1.16
SPTLC1-201ENST00000262554 MOBPQ13875 183 aa7.78□□□□□ -1.16
SPTLC1-201ENST00000262554 DNAH17Q9UFH2 4485 aa7.77□□□□□ -1.16
SPTLC1-201ENST00000262554 DNAH2Q9P225 4427 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 H7BZZ5 65 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 DNAH6Q9C0G6 4158 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 A8MWP4 228 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 J3KT08 172 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 NDUFC1O43677 76 aa7.77□□□□□ -1.17
SPTLC1-201ENST00000262554 PRR15Q8IV56 129 aa7.76□□□□□ -1.17
SPTLC1-201ENST00000262554 ANAPC11Q9NYG5 84 aa7.76□□□□□ -1.17
SPTLC1-201ENST00000262554 Q6ZSA8 131 aa7.75□□□□□ -1.17
SPTLC1-201ENST00000262554 HRCT1Q6UXD1 115 aa7.75□□□□□ -1.17
SPTLC1-201ENST00000262554 WFDC13Q8IUB5 93 aa7.75□□□□□ -1.17
SPTLC1-201ENST00000262554 KRTAP10-1P60331 282 aa7.74□□□□□ -1.17
SPTLC1-201ENST00000262554 A0A0U1RQV1 116 aa7.73□□□□□ -1.17
SPTLC1-201ENST00000262554 FAM236DA0A1B0GTK5 79 aa7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 FAM236CP0DP71 79 aa7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 RPS28P62857 69 aaKnown RBP7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 ALMS1Q8TCU4 4167 aa7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 LCE6AA0A183 80 aa7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 NDUFB1O75438 58 aa7.72□□□□□ -1.17
SPTLC1-201ENST00000262554 CASC2Q6XLA1 102 aa7.71□□□□□ -1.18
SPTLC1-201ENST00000262554 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
SPTLC1-201ENST00000262554 Q96NJ1 140 aa7.7□□□□□ -1.18
SPTLC1-201ENST00000262554 C5orf47Q569G3 176 aa7.7□□□□□ -1.18
SPTLC1-201ENST00000262554 FRAS1Q86XX4 4008 aa7.68□□□□□ -1.18
SPTLC1-201ENST00000262554 ATP5EP56381 51 aaPredicted RBP7.66□□□□□ -1.18
SPTLC1-201ENST00000262554 SSBP3-AS1Q7Z2R9 100 aa7.66□□□□□ -1.18
SPTLC1-201ENST00000262554 DNAH8Q96JB1 4490 aa7.65□□□□□ -1.18
SPTLC1-201ENST00000262554 MMP24-AS1A0A0U1RRL7 71 aa7.65□□□□□ -1.18
SPTLC1-201ENST00000262554 CDK2AP2O75956 126 aa7.65□□□□□ -1.18
SPTLC1-201ENST00000262554 CD164Q04900 197 aa7.65□□□□□ -1.18
SPTLC1-201ENST00000262554 hDV103S1A0JD37 113 aa7.63□□□□□ -1.19
SPTLC1-201ENST00000262554 MP68P56378 58 aa7.63□□□□□ -1.19
SPTLC1-201ENST00000262554 SERP1Q9Y6X1 66 aa7.62□□□□□ -1.19
SPTLC1-201ENST00000262554 A0A1B0GVX0 72 aa7.62□□□□□ -1.19
SPTLC1-201ENST00000262554 ZCCHC13Q8WW36 166 aaKnown RBP7.62□□□□□ -1.19
SPTLC1-201ENST00000262554 FAM229BQ4G0N7 80 aa7.61□□□□□ -1.19
SPTLC1-201ENST00000262554 LINC00336Q6ZUF6 198 aa7.6□□□□□ -1.19
SPTLC1-201ENST00000262554 C8orf17Q9NRJ1 99 aa7.6□□□□□ -1.19
SPTLC1-201ENST00000262554 IGHV6-1A0A0B4J1U7 121 aa7.6□□□□□ -1.19
SPTLC1-201ENST00000262554 PKD1P98161 4303 aa7.59□□□□□ -1.19
SPTLC1-201ENST00000262554 DNAH11Q96DT5 4516 aa7.59□□□□□ -1.19
SPTLC1-201ENST00000262554 OXTP01178 125 aa7.59□□□□□ -1.19
SPTLC1-201ENST00000262554 PLA2G1BP04054 148 aaKnown RBP7.59□□□□□ -1.19
SPTLC1-201ENST00000262554 DNAH5Q8TE73 4624 aa7.59□□□□□ -1.19
SPTLC1-201ENST00000262554 A0A087X002 238 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms