RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 TRIOO75962 3097 aa7□□□□□ -1.29
MSH6-201ENST00000234420 A0A0C4DFX4 3053 aa6.99□□□□□ -1.29
MSH6-201ENST00000234420 C19orf73Q9NVV2 129 aa6.99□□□□□ -1.29
MSH6-201ENST00000234420 H1FX-AS1Q4G0G2 97 aa6.99□□□□□ -1.29
MSH6-201ENST00000234420 SPRR4Q96PI1 79 aa6.99□□□□□ -1.29
MSH6-201ENST00000234420 CNBPP62633 177 aaKnown RBP6.98□□□□□ -1.29
MSH6-201ENST00000234420 R4GN34 69 aa6.98□□□□□ -1.29
MSH6-201ENST00000234420 CFAP46Q8IYW2 2715 aa6.97□□□□□ -1.29
MSH6-201ENST00000234420 SPTBN5Q9NRC6 3674 aaKnown RBP6.97□□□□□ -1.29
MSH6-201ENST00000234420 COL6A3P12111 3177 aa6.97□□□□□ -1.29
MSH6-201ENST00000234420 USP9YO00507 2555 aaPredicted RBP6.96□□□□□ -1.3
MSH6-201ENST00000234420 CRYBG3Q68DQ2 2970 aa6.96□□□□□ -1.3
MSH6-201ENST00000234420 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.96□□□□□ -1.3
MSH6-201ENST00000234420 PRR34Q9NV39 138 aa6.95□□□□□ -1.3
MSH6-201ENST00000234420 C10orf142B7Z368 130 aa6.94□□□□□ -1.3
MSH6-201ENST00000234420 USP34Q70CQ2 3546 aa6.94□□□□□ -1.3
MSH6-201ENST00000234420 ASPMQ8IZT6 3477 aa6.92□□□□□ -1.3
MSH6-201ENST00000234420 VPS13AQ96RL7 3174 aa6.92□□□□□ -1.3
MSH6-201ENST00000234420 SEC61BP60468 96 aaKnown RBP6.92□□□□□ -1.3
MSH6-201ENST00000234420 MYO15AQ9UKN7 3530 aa6.91□□□□□ -1.3
MSH6-201ENST00000234420 NDUFAF8A1L188 74 aa6.91□□□□□ -1.3
MSH6-201ENST00000234420 RPL37P61927 97 aaKnown RBP6.91□□□□□ -1.3
MSH6-201ENST00000234420 GIG44P09565 113 aaPredicted RBP6.88□□□□□ -1.31
MSH6-201ENST00000234420 HTTP42858 3142 aa6.88□□□□□ -1.31
MSH6-201ENST00000234420 CFAP47Q6ZTR5 3102 aa6.87□□□□□ -1.31
MSH6-201ENST00000234420 MMP24-AS1A0A0U1RRL7 71 aa6.87□□□□□ -1.31
MSH6-201ENST00000234420 EPG5Q9HCE0 2579 aa6.86□□□□□ -1.31
MSH6-201ENST00000234420 WDFY4Q6ZS81 3184 aa6.86□□□□□ -1.31
MSH6-201ENST00000234420 M0QZ58 72 aa6.85□□□□□ -1.31
MSH6-201ENST00000234420 A0A096LNT2 108 aa6.84□□□□□ -1.31
MSH6-201ENST00000234420 DMBT1Q9UGM3 2413 aaPredicted RBP6.83□□□□□ -1.32
MSH6-201ENST00000234420 Q5W150 140 aa6.83□□□□□ -1.32
MSH6-201ENST00000234420 SPATA8Q6RVD6 105 aa6.82□□□□□ -1.32
MSH6-201ENST00000234420 ZCCHC13Q8WW36 166 aaKnown RBP6.81□□□□□ -1.32
MSH6-201ENST00000234420 MGAM2Q2M2H8 2515 aa6.8□□□□□ -1.32
MSH6-201ENST00000234420 ASB16-AS1Q495Z4 193 aa6.8□□□□□ -1.32
MSH6-201ENST00000234420 WDFY3Q8IZQ1 3526 aa6.8□□□□□ -1.32
MSH6-201ENST00000234420 KRTAP25-1Q3LHN0 102 aa6.79□□□□□ -1.32
MSH6-201ENST00000234420 ADM2Q7Z4H4 148 aa6.79□□□□□ -1.32
MSH6-201ENST00000234420 HECTD1Q9ULT8 2610 aa6.78□□□□□ -1.32
MSH6-201ENST00000234420 AKAP13Q12802 2813 aa6.78□□□□□ -1.32
MSH6-201ENST00000234420 C20orf166-AS1Q96NR2 134 aa6.77□□□□□ -1.33
MSH6-201ENST00000234420 KRTAP10-2P60368 255 aa6.75□□□□□ -1.33
MSH6-201ENST00000234420 KLK9Q2XQG4 91 aa6.75□□□□□ -1.33
MSH6-201ENST00000234420 A6NN06 94 aa6.75□□□□□ -1.33
MSH6-201ENST00000234420 KRTAP1-3Q8IUG1 177 aa6.74□□□□□ -1.33
MSH6-201ENST00000234420 KRTAP10-1P60331 282 aa6.72□□□□□ -1.33
MSH6-201ENST00000234420 Q8NDZ9 215 aa6.72□□□□□ -1.33
MSH6-201ENST00000234420 LCE6AA0A183 80 aa6.72□□□□□ -1.33
MSH6-201ENST00000234420 STAB1Q9NY15 2570 aa6.7□□□□□ -1.34
MSH6-201ENST00000234420 NBPF19A0A087WUL8 3843 aa6.68□□□□□ -1.34
MSH6-201ENST00000234420 LINC00472Q9H8W2 130 aa6.68□□□□□ -1.34
MSH6-201ENST00000234420 ITPR3Q14573 2671 aa6.67□□□□□ -1.34
MSH6-201ENST00000234420 FRYQ5TBA9 3013 aa6.66□□□□□ -1.34
MSH6-201ENST00000234420 TEX15Q9BXT5 2789 aa6.65□□□□□ -1.34
MSH6-201ENST00000234420 ASH1LQ9NR48 2969 aaKnown RBP6.65□□□□□ -1.34
MSH6-201ENST00000234420 KRTAP1-1Q07627 177 aa6.65□□□□□ -1.35
MSH6-201ENST00000234420 CEP295Q9C0D2 2601 aa6.65□□□□□ -1.35
MSH6-201ENST00000234420 ATRQ13535 2644 aa6.63□□□□□ -1.35
MSH6-201ENST00000234420 A8MU10 97 aa6.63□□□□□ -1.35
MSH6-201ENST00000234420 DCHS1Q96JQ0 3298 aa6.62□□□□□ -1.35
MSH6-201ENST00000234420 A0A1B0GVY2 172 aa6.6□□□□□ -1.35
MSH6-201ENST00000234420 LAMA5O15230 3695 aa6.6□□□□□ -1.35
MSH6-201ENST00000234420 MAST4O15021 2626 aa6.59□□□□□ -1.35
MSH6-201ENST00000234420 FLNAP21333 2647 aaKnown RBP6.59□□□□□ -1.35
MSH6-201ENST00000234420 LOC400499M0QZD8 3231 aa6.59□□□□□ -1.35
MSH6-201ENST00000234420 KRTAP26-1Q6PEX3 210 aa6.59□□□□□ -1.35
MSH6-201ENST00000234420 EYSQ5T1H1 3165 aa6.58□□□□□ -1.36
MSH6-201ENST00000234420 FLNBO75369 2602 aaKnown RBP6.58□□□□□ -1.36
MSH6-201ENST00000234420 PLAC8Q9NZF1 115 aa6.58□□□□□ -1.36
MSH6-201ENST00000234420 MGAQ8IWI9 3026 aa6.57□□□□□ -1.36
MSH6-201ENST00000234420 Q6ZR54 194 aa6.56□□□□□ -1.36
MSH6-201ENST00000234420 LAMA1P25391 3075 aa6.55□□□□□ -1.36
MSH6-201ENST00000234420 C10orf95Q9H7T3 257 aa6.55□□□□□ -1.36
MSH6-201ENST00000234420 HELZ2Q9BYK8 2649 aaKnown RBP6.55□□□□□ -1.36
MSH6-201ENST00000234420 CHD6Q8TD26 2715 aa6.54□□□□□ -1.36
MSH6-201ENST00000234420 PANO1I0J062 215 aa6.53□□□□□ -1.36
MSH6-201ENST00000234420 SPRR1AP35321 89 aa6.53□□□□□ -1.36
MSH6-201ENST00000234420 ATMQ13315 3056 aa6.52□□□□□ -1.37
MSH6-201ENST00000234420 A8MUU9 505 aa6.51□□□□□ -1.37
MSH6-201ENST00000234420 CENPEQ02224 2701 aa6.5□□□□□ -1.37
MSH6-201ENST00000234420 STAB2Q8WWQ8 2551 aa6.5□□□□□ -1.37
MSH6-201ENST00000234420 COL6A5A8TX70 2615 aa6.49□□□□□ -1.37
MSH6-201ENST00000234420 KRTAP1-5Q9BYS1 174 aa6.48□□□□□ -1.37
MSH6-201ENST00000234420 CHD7Q9P2D1 2997 aa6.47□□□□□ -1.37
MSH6-201ENST00000234420 BOD1L1Q8NFC6 3051 aa6.47□□□□□ -1.37
MSH6-201ENST00000234420 NBEAL1Q6ZS30 2694 aa6.46□□□□□ -1.38
MSH6-201ENST00000234420 SPRR1BP22528 89 aa6.45□□□□□ -1.38
MSH6-201ENST00000234420 KRTAP29-1A8MX34 341 aaPredicted RBP6.45□□□□□ -1.38
MSH6-201ENST00000234420 BAHCC1Q9P281 2608 aa6.45□□□□□ -1.38
MSH6-201ENST00000234420 ZFHX4Q86UP3 3567 aa6.44□□□□□ -1.38
MSH6-201ENST00000234420 RELNP78509 3460 aa6.43□□□□□ -1.38
MSH6-201ENST00000234420 A0A087X002 238 aa6.42□□□□□ -1.38
MSH6-201ENST00000234420 KRTAP10-8P60410 259 aa6.42□□□□□ -1.38
MSH6-201ENST00000234420 TEP1Q99973 2627 aaKnown RBP6.41□□□□□ -1.38
MSH6-201ENST00000234420 ZZEF1O43149 2961 aa6.4□□□□□ -1.39
MSH6-201ENST00000234420 LRBAP50851 2863 aa6.4□□□□□ -1.39
MSH6-201ENST00000234420 KRTAP11-1Q8IUC1 163 aa6.39□□□□□ -1.39
MSH6-201ENST00000234420 KRTAP4-16G5E9R7 235 aaPredicted RBP6.39□□□□□ -1.39
MSH6-201ENST00000234420 NOTCH2NLQ7Z3S9 236 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms