RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 PRO3102Q9H379 93 aa1.5□□□□□ -2.17
VIM-210ENST00000637053 ALMS1Q8TCU4 4167 aa1.5□□□□□ -2.17
VIM-210ENST00000637053 ASXL3Q9C0F0 2248 aa1.5□□□□□ -2.17
VIM-210ENST00000637053 PRB3Q04118 309 aaPredicted RBP1.49□□□□□ -2.17
VIM-210ENST00000637053 IGFL1Q6UW32 110 aa1.49□□□□□ -2.17
VIM-210ENST00000637053 TTTY10Q9BZA0 68 aa1.49□□□□□ -2.17
VIM-210ENST00000637053 CRIPTQ9P021 101 aa1.49□□□□□ -2.17
VIM-210ENST00000637053 HMCN1Q96RW7 5635 aa1.48□□□□□ -2.17
VIM-210ENST00000637053 KNTC1P50748 2209 aa1.48□□□□□ -2.17
VIM-210ENST00000637053 TRIOBPQ9H2D6 2365 aa1.48□□□□□ -2.17
VIM-210ENST00000637053 KRTAP1-4P0C5Y4 121 aa1.48□□□□□ -2.17
VIM-210ENST00000637053 URB1O60287 2271 aaKnown RBP1.48□□□□□ -2.17
VIM-210ENST00000637053 TNRC6CQ9HCJ0 1690 aaKnown RBP1.48□□□□□ -2.17
VIM-210ENST00000637053 BAHCC1Q9P281 2608 aa1.47□□□□□ -2.17
VIM-210ENST00000637053 SPINK13Q1W4C9 94 aa1.47□□□□□ -2.17
VIM-210ENST00000637053 LINC01590Q5TEZ4 76 aa1.47□□□□□ -2.17
VIM-210ENST00000637053 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.47□□□□□ -2.175e-7■■■■■ 28.6
VIM-210ENST00000637053 BPTFQ12830 3046 aa1.47□□□□□ -2.17
VIM-210ENST00000637053 SORL1Q92673 2214 aa1.46□□□□□ -2.18
VIM-210ENST00000637053 LYNX1G3V0Z9 82 aa1.46□□□□□ -2.18
VIM-210ENST00000637053 CNOT1A5YKK6 2376 aaKnown RBP1.45□□□□□ -2.18
VIM-210ENST00000637053 CACNA1EQ15878 2313 aa1.45□□□□□ -2.18
VIM-210ENST00000637053 ICE1Q9Y2F5 2266 aa1.45□□□□□ -2.18
VIM-210ENST00000637053 RPL37P61927 97 aaKnown RBP1.45□□□□□ -2.18
VIM-210ENST00000637053 LINC00575Q6W349 94 aa1.45□□□□□ -2.18
VIM-210ENST00000637053 UBE2DNLQ8IWF7 75 aa1.45□□□□□ -2.18
VIM-210ENST00000637053 COL4A4P53420 1690 aaPredicted RBP1.45□□□□□ -2.18
VIM-210ENST00000637053 PDE4DIPQ5VU43 2346 aa1.44□□□□□ -2.18
VIM-210ENST00000637053 AHCTF1Q8WYP5 2266 aa1.44□□□□□ -2.18
VIM-210ENST00000637053 K7EQZ3 153 aa1.44□□□□□ -2.18
VIM-210ENST00000637053 UNQ6190/PRO20217Q6UXQ8 127 aa1.44□□□□□ -2.18
VIM-210ENST00000637053 ASCC3Q8N3C0 2202 aaKnown RBP1.44□□□□□ -2.18
VIM-210ENST00000637053 POLR2KP53803 58 aaKnown RBP1.43□□□□□ -2.18
VIM-210ENST00000637053 MINOS1Q5TGZ0 78 aa1.43□□□□□ -2.18
VIM-210ENST00000637053 COX6B2Q6YFQ2 88 aa1.43□□□□□ -2.18
VIM-210ENST00000637053 MRPL34Q9BQ48 92 aaKnown RBP1.43□□□□□ -2.18
VIM-210ENST00000637053 TP53AIP1Q9HCN2 124 aa1.43□□□□□ -2.18
VIM-210ENST00000637053 H3BSH0 61 aa1.42□□□□□ -2.18
VIM-210ENST00000637053 KRTAP5-7Q6L8G8 165 aa1.42□□□□□ -2.18
VIM-210ENST00000637053 H0YAA0 97 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 I3L2K1 104 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 RPL39P62891 51 aaKnown RBP1.41□□□□□ -2.18
VIM-210ENST00000637053 KRTAP13-4Q3LI77 160 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 PCOTHQ58A44 107 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 USMG5Q96IX5 58 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 C6orf48Q9UBA6 75 aa1.41□□□□□ -2.18
VIM-210ENST00000637053 LYNX1P0DP58 116 aa1.4□□□□□ -2.19
VIM-210ENST00000637053 DEFB123Q8N688 67 aa1.4□□□□□ -2.19
VIM-210ENST00000637053 PIEZO2Q9H5I5 2752 aa1.4□□□□□ -2.19
VIM-210ENST00000637053 ZDBF2Q9HCK1 2354 aa1.39□□□□□ -2.19
VIM-210ENST00000637053 WFDC13Q8IUB5 93 aa1.39□□□□□ -2.19
VIM-210ENST00000637053 RPL39LQ96EH5 51 aaKnown RBP1.39□□□□□ -2.19
VIM-210ENST00000637053 C10orf95Q9H7T3 257 aa1.39□□□□□ -2.19
VIM-210ENST00000637053 JMJD1CQ15652 2540 aa1.39□□□□□ -2.19
VIM-210ENST00000637053 PTPRQQ9UMZ3 2332 aa1.39□□□□□ -2.19
VIM-210ENST00000637053 CCL22O00626 93 aa1.38□□□□□ -2.19
VIM-210ENST00000637053 PIGYQ3MUY2 71 aa1.38□□□□□ -2.19
VIM-210ENST00000637053 Q6ZSA8 131 aa1.38□□□□□ -2.19
VIM-210ENST00000637053 FLG2Q5D862 2391 aaPredicted RBP1.37□□□□□ -2.19
VIM-210ENST00000637053 FAM208BQ5VWN6 2430 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 KNL1Q8NG31 2342 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 IGLV5-48A0A075B6I7 105 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 COX6A2Q02221 97 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 SPINK9Q5DT21 86 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 LELP1Q5T871 98 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 WFDC10BQ8IUB3 73 aa1.37□□□□□ -2.19
VIM-210ENST00000637053 TRANK1O15050 2925 aa1.36□□□□□ -2.19
VIM-210ENST00000637053 RPS27P42677 84 aaKnown RBP1.36□□□□□ -2.19
VIM-210ENST00000637053 DEFB103AP81534 67 aa1.36□□□□□ -2.19
VIM-210ENST00000637053 COL6A6A6NMZ7 2263 aa1.36□□□□□ -2.19
VIM-210ENST00000637053 DOPEY2Q9Y3R5 2298 aa1.36□□□□□ -2.19
VIM-210ENST00000637053 CACNA1BQ00975 2339 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 OTOGLQ3ZCN5 2332 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 H1FX-AS1Q4G0G2 97 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 LEAP2Q969E1 77 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 ZNF462Q96JM2 2506 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 NAV3Q8IVL0 2385 aa1.35□□□□□ -2.19
VIM-210ENST00000637053 PRCDQ00LT1 54 aa1.34□□□□□ -2.19
VIM-210ENST00000637053 BRD3OSQ6XYD6 125 aa1.34□□□□□ -2.19
VIM-210ENST00000637053 KAAG1Q9UBP8 84 aa1.34□□□□□ -2.19
VIM-210ENST00000637053 CHD8Q9HCK8 2581 aa1.34□□□□□ -2.2
VIM-210ENST00000637053 SETXQ7Z333 2677 aaKnown RBP1.33□□□□□ -2.2
VIM-210ENST00000637053 TNRC18O15417 2968 aaPredicted RBP1.33□□□□□ -2.2
VIM-210ENST00000637053 PLCE1Q9P212 2302 aa1.33□□□□□ -2.2
VIM-210ENST00000637053 K7EIL1 84 aa1.33□□□□□ -2.2
VIM-210ENST00000637053 DEFB130BP0DP73 79 aa1.33□□□□□ -2.2
VIM-210ENST00000637053 DEFB130AP0DP74 79 aa1.33□□□□□ -2.2
VIM-210ENST00000637053 USP24Q9UPU5 2620 aa1.32□□□□□ -2.2
VIM-210ENST00000637053 TPRP12270 2363 aaKnown RBP1.32□□□□□ -2.2
VIM-210ENST00000637053 SPRR5A0A1B0GTR4 108 aa1.32□□□□□ -2.2
VIM-210ENST00000637053 WNK2Q9Y3S1 2297 aa1.32□□□□□ -2.2
VIM-210ENST00000637053 IGF2RP11717 2491 aa1.31□□□□□ -2.2
VIM-210ENST00000637053 LCE3DQ9BYE3 92 aa1.31□□□□□ -2.2
VIM-210ENST00000637053 NAV2Q8IVL1 2488 aa1.31□□□□□ -2.2
VIM-210ENST00000637053 USP9XQ93008 2570 aaPredicted RBP1.31□□□□□ -2.2
VIM-210ENST00000637053 A0A0C4DFX4 3053 aa1.31□□□□□ -2.2
VIM-210ENST00000637053 PCNTO95613 3336 aa1.3□□□□□ -2.2
VIM-210ENST00000637053 MAST4O15021 2626 aa1.3□□□□□ -2.2
VIM-210ENST00000637053 MMP24-AS1A0A0U1RRL7 71 aa1.3□□□□□ -2.2
VIM-210ENST00000637053 M0QY20 66 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms