RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MYO3AQ8NEV4 1616 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 HIVEP1P15822 2718 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 CREBBPQ92793 2442 aa-0.9□□□□□ -2.55
SMCHD1-204ENST00000581226 PREX1Q8TCU6 1659 aa-0.91□□□□□ -2.55
SMCHD1-204ENST00000581226 SPG11Q96JI7 2443 aa-0.91□□□□□ -2.56
SMCHD1-204ENST00000581226 UBE2D4Q9Y2X8 147 aa-0.91□□□□□ -2.56
SMCHD1-204ENST00000581226 RGPD3A6NKT7 1758 aaPredicted RBP-0.91□□□□□ -2.56
SMCHD1-204ENST00000581226 SPRR2EP22531 72 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 ALKAL2Q6UX46 152 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 WFDC13Q8IUB5 93 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 CLIP1P30622 1438 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 STARD9Q9P2P6 4700 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 ATP10BO94823 1461 aa-0.92□□□□□ -2.56
SMCHD1-204ENST00000581226 CCL22O00626 93 aa-0.93□□□□□ -2.56
SMCHD1-204ENST00000581226 ZNF720Q7Z2F6 126 aa-0.93□□□□□ -2.56
SMCHD1-204ENST00000581226 SUPT6HQ7KZ85 1726 aaKnown RBP-0.93□□□□□ -2.56
SMCHD1-204ENST00000581226 FAT1Q14517 4588 aa-0.93□□□□□ -2.56
SMCHD1-204ENST00000581226 DMXL1Q9Y485 3027 aa-0.94□□□□□ -2.56
SMCHD1-204ENST00000581226 HEPN1Q6WQI6 88 aa-0.94□□□□□ -2.56
SMCHD1-204ENST00000581226 C20orf78Q9BR46 151 aa-0.94□□□□□ -2.56
SMCHD1-204ENST00000581226 DSPP15924 2871 aaKnown RBP-0.94□□□□□ -2.56
SMCHD1-204ENST00000581226 C4AP0C0L4 1744 aa-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 C4BP0C0L5 1744 aa-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 CICQ96RK0 1608 aaPredicted RBP-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 KRTAP19-8Q3LI54 63 aa-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 CDKN2A-AS1Q9UH64 79 aa-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 AKAP9Q99996 3911 aa-0.95□□□□□ -2.56
SMCHD1-204ENST00000581226 POLR1AO95602 1720 aaPredicted RBP-0.96□□□□□ -2.56
SMCHD1-204ENST00000581226 NEXMIFQ5QGS0 1516 aa-0.96□□□□□ -2.56
SMCHD1-204ENST00000581226 CUBNO60494 3623 aa-0.96□□□□□ -2.56
SMCHD1-204ENST00000581226 LRRC7Q96NW7 1537 aa-0.97□□□□□ -2.56
SMCHD1-204ENST00000581226 TMEM131LA2VDJ0 1609 aa-0.97□□□□□ -2.57
SMCHD1-204ENST00000581226 TIAM2Q8IVF5 1701 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 VPS13DQ5THJ4 4388 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 COX7BP24311 80 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 ZNF831Q5JPB2 1677 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 RGPD8O14715 1765 aaPredicted RBP-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 RGPD5Q99666 1765 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 CEP162Q5TB80 1403 aa-0.98□□□□□ -2.57
SMCHD1-204ENST00000581226 ATP7BP35670 1465 aa-0.99□□□□□ -2.57
SMCHD1-204ENST00000581226 FASNP49327 2511 aaKnown RBP-0.99□□□□□ -2.57
SMCHD1-204ENST00000581226 KALRNO60229 2985 aa-1□□□□□ -2.57
SMCHD1-204ENST00000581226 HMGN2P05204 90 aaKnown RBP-1□□□□□ -2.57
SMCHD1-204ENST00000581226 PKIAP61925 76 aa-1□□□□□ -2.57
SMCHD1-204ENST00000581226 NMSQ5H8A3 153 aa-1□□□□□ -2.57
SMCHD1-204ENST00000581226 TEP1Q99973 2627 aaKnown RBP-1□□□□□ -2.57
SMCHD1-204ENST00000581226 TROQ12816 1431 aaPredicted RBP-1□□□□□ -2.57
SMCHD1-204ENST00000581226 ITPR3Q14573 2671 aa-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 DNAH3Q8TD57 4116 aa-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 BAZ1AQ9NRL2 1556 aaPredicted RBP-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 TNRC6CQ9HCJ0 1690 aaKnown RBP-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 DOT1LQ8TEK3 1739 aa-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 LTN1O94822 1766 aa-1.01□□□□□ -2.57
SMCHD1-204ENST00000581226 UBR4Q5T4S7 5183 aa-1.02□□□□□ -2.57
SMCHD1-204ENST00000581226 S100A8P05109 93 aa-1.02□□□□□ -2.57
SMCHD1-204ENST00000581226 ANKRD11Q6UB99 2663 aaPredicted RBP-1.02□□□□□ -2.57
SMCHD1-204ENST00000581226 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.03□□□□□ -2.57
SMCHD1-204ENST00000581226 USP32Q8NFA0 1604 aa-1.03□□□□□ -2.57
SMCHD1-204ENST00000581226 GYPAP02724 150 aa-1.03□□□□□ -2.57
SMCHD1-204ENST00000581226 SCN11AQ9UI33 1791 aa-1.03□□□□□ -2.58
SMCHD1-204ENST00000581226 USH2AO75445 5202 aa-1.03□□□□□ -2.58
SMCHD1-204ENST00000581226 LRRC9Q6ZRR7 1453 aa-1.04□□□□□ -2.58
SMCHD1-204ENST00000581226 NDUFA3O95167 84 aa-1.04□□□□□ -2.58
SMCHD1-204ENST00000581226 APOBP04114 4563 aaKnown RBP-1.05□□□□□ -2.58
SMCHD1-204ENST00000581226 VPS13BQ7Z7G8 4022 aa-1.05□□□□□ -2.58
SMCHD1-204ENST00000581226 GCN1Q92616 2671 aaKnown RBP-1.05□□□□□ -2.58
SMCHD1-204ENST00000581226 PKHD1L1Q86WI1 4243 aa-1.05□□□□□ -2.58
SMCHD1-204ENST00000581226 A0A1B0GUT8 65 aa-1.06□□□□□ -2.58
SMCHD1-204ENST00000581226 IQCF6A8MYZ5 107 aa-1.06□□□□□ -2.58
SMCHD1-204ENST00000581226 CEP170BQ9Y4F5 1589 aaPredicted RBP-1.06□□□□□ -2.58
SMCHD1-204ENST00000581226 PLGLAQ15195 96 aa-1.07□□□□□ -2.58
SMCHD1-204ENST00000581226 PPLO60437 1756 aa-1.07□□□□□ -2.58
SMCHD1-204ENST00000581226 NESP48681 1621 aa-1.07□□□□□ -2.58
SMCHD1-204ENST00000581226 ANK3Q12955 4377 aaKnown RBP-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 CCNB3Q8WWL7 1395 aa-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 LAMA1P25391 3075 aa-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 MUC17Q685J3 4493 aa-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 COX6B2Q6YFQ2 88 aa-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 GAFA1Q96PS6 74 aa-1.08□□□□□ -2.58
SMCHD1-204ENST00000581226 USP9YO00507 2555 aaPredicted RBP-1.09□□□□□ -2.58
SMCHD1-204ENST00000581226 TRAV21A0A0B4J279 112 aa-1.09□□□□□ -2.58
SMCHD1-204ENST00000581226 PEA15Q15121 130 aa-1.09□□□□□ -2.58
SMCHD1-204ENST00000581226 KRTAP20-2Q3LI61 65 aa-1.11□□□□□ -2.59
SMCHD1-204ENST00000581226 SPRR2FQ96RM1 72 aa-1.11□□□□□ -2.59
SMCHD1-204ENST00000581226 NWD1Q149M9 1564 aa-1.12□□□□□ -2.59
SMCHD1-204ENST00000581226 TTC37Q6PGP7 1564 aa-1.12□□□□□ -2.59
SMCHD1-204ENST00000581226 DNAH11Q96DT5 4516 aa-1.12□□□□□ -2.59
SMCHD1-204ENST00000581226 SMIM11AP58511 58 aa-1.12□□□□□ -2.59
SMCHD1-204ENST00000581226 MYMXA0A1B0GTQ4 84 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 MT1AP04731 61 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 PYY3Q5JQD4 70 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 HERC2O95714 4834 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 MYO18BQ8IUG5 2567 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 WIZO95785 1651 aa-1.13□□□□□ -2.59
SMCHD1-204ENST00000581226 LRRK2Q5S007 2527 aa-1.14□□□□□ -2.59
SMCHD1-204ENST00000581226 ABCC3O15438 1527 aa-1.14□□□□□ -2.59
SMCHD1-204ENST00000581226 NBEAQ8NFP9 2946 aa-1.14□□□□□ -2.59
SMCHD1-204ENST00000581226 NEBP20929 6669 aa-1.14□□□□□ -2.59
SMCHD1-204ENST00000581226 H0YGG7 62 aa-1.14□□□□□ -2.59
SMCHD1-204ENST00000581226 PLXNC1O60486 1568 aa-1.14□□□□□ -2.59
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms