RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 DOT1LQ8TEK3 1739 aa0.65□□□□□ -2.31
SCFD1-208ENST00000553278 PKD1L1Q8TDX9 2849 aa0.65□□□□□ -2.31
SCFD1-208ENST00000553278 COX6B2Q6YFQ2 88 aa0.64□□□□□ -2.31
SCFD1-208ENST00000553278 FAT4Q6V0I7 4981 aa0.64□□□□□ -2.31
SCFD1-208ENST00000553278 ABCA8O94911 1581 aa0.63□□□□□ -2.31
SCFD1-208ENST00000553278 CCDC88BA6NC98 1476 aa0.63□□□□□ -2.31
SCFD1-208ENST00000553278 SCN11AQ9UI33 1791 aa0.62□□□□□ -2.31
SCFD1-208ENST00000553278 CELSR1Q9NYQ6 3014 aa0.62□□□□□ -2.31
SCFD1-208ENST00000553278 SYNE1Q8NF91 8797 aaKnown RBP0.62□□□□□ -2.31
SCFD1-208ENST00000553278 NREPQ16612 68 aa0.61□□□□□ -2.31
SCFD1-208ENST00000553278 NWD1Q149M9 1564 aa0.61□□□□□ -2.31
SCFD1-208ENST00000553278 HRNRQ86YZ3 2850 aaPredicted RBP0.6□□□□□ -2.31
SCFD1-208ENST00000553278 LOC730098B7Z3J9 87 aa0.6□□□□□ -2.31
SCFD1-208ENST00000553278 PHGR1C9JFL3 82 aa0.6□□□□□ -2.31
SCFD1-208ENST00000553278 CFAP43Q8NDM7 1665 aa0.59□□□□□ -2.32
SCFD1-208ENST00000553278 LELP1Q5T871 98 aa0.58□□□□□ -2.32
SCFD1-208ENST00000553278 TNRC6CQ9HCJ0 1690 aaKnown RBP0.58□□□□□ -2.32
SCFD1-208ENST00000553278 LRRIQ1Q96JM4 1722 aa0.58□□□□□ -2.32
SCFD1-208ENST00000553278 LCE6AA0A183 80 aa0.57□□□□□ -2.32
SCFD1-208ENST00000553278 HMGA1P17096 107 aaKnown RBP0.57□□□□□ -2.32
SCFD1-208ENST00000553278 CHD8Q9HCK8 2581 aa0.57□□□□□ -2.32
SCFD1-208ENST00000553278 WFDC13Q8IUB5 93 aa0.56□□□□□ -2.32
SCFD1-208ENST00000553278 SMCO4Q9NRQ5 59 aa0.56□□□□□ -2.32
SCFD1-208ENST00000553278 NESP48681 1621 aa0.56□□□□□ -2.32
SCFD1-208ENST00000553278 DMBT1Q9UGM3 2413 aaPredicted RBP0.54□□□□□ -2.32
SCFD1-208ENST00000553278 NDUFA4O00483 81 aa0.54□□□□□ -2.32
SCFD1-208ENST00000553278 NDUFA3O95167 84 aa0.54□□□□□ -2.32
SCFD1-208ENST00000553278 HUWE1Q7Z6Z7 4374 aaKnown RBP0.54□□□□□ -2.32
SCFD1-208ENST00000553278 REV3LO60673 3130 aa0.54□□□□□ -2.32
SCFD1-208ENST00000553278 ANKRD50Q9ULJ7 1429 aa0.53□□□□□ -2.32
SCFD1-208ENST00000553278 CD163L1Q9NR16 1453 aa0.52□□□□□ -2.33
SCFD1-208ENST00000553278 MYO5CQ9NQX4 1742 aa0.52□□□□□ -2.33
SCFD1-208ENST00000553278 CACNA1AO00555 2505 aa0.52□□□□□ -2.33
SCFD1-208ENST00000553278 MUC5BQ9HC84 5762 aaPredicted RBP0.51□□□□□ -2.33
SCFD1-208ENST00000553278 PDCD5O14737 125 aa0.51□□□□□ -2.33
SCFD1-208ENST00000553278 UGGT2Q9NYU1 1516 aa0.5□□□□□ -2.33
SCFD1-208ENST00000553278 TNXBP22105 4242 aa0.5□□□□□ -2.33
SCFD1-208ENST00000553278 PRM1P04553 51 aa0.5□□□□□ -2.33
SCFD1-208ENST00000553278 AHNAKQ09666 5890 aaKnown RBP0.5□□□□□ -2.33
SCFD1-208ENST00000553278 KNL1Q8NG31 2342 aa0.5□□□□□ -2.33
SCFD1-208ENST00000553278 PLCH1Q4KWH8 1693 aa0.49□□□□□ -2.33
SCFD1-208ENST00000553278 EP300Q09472 2414 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-208ENST00000553278 FAT2Q9NYQ8 4349 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 C4AP0C0L4 1744 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 C4BP0C0L5 1744 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 RICTORQ6R327 1708 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 H3BVH4 76 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 IQGAP3Q86VI3 1631 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 KMT2AQ03164 3969 aa0.48□□□□□ -2.33
SCFD1-208ENST00000553278 DEFA5Q01523 94 aa0.47□□□□□ -2.33
SCFD1-208ENST00000553278 MAP1BP46821 2468 aaKnown RBP0.47□□□□□ -2.33
SCFD1-208ENST00000553278 BSNQ9UPA5 3926 aa0.46□□□□□ -2.34
SCFD1-208ENST00000553278 M0R2T5 61 aa0.46□□□□□ -2.34
SCFD1-208ENST00000553278 C3orf79P0CE67 100 aa0.46□□□□□ -2.34
SCFD1-208ENST00000553278 PRO3102Q9H379 93 aa0.46□□□□□ -2.34
SCFD1-208ENST00000553278 DDX60LQ5H9U9 1706 aaKnown RBP0.46□□□□□ -2.34
SCFD1-208ENST00000553278 WNK1Q9H4A3 2382 aa0.45□□□□□ -2.34
SCFD1-208ENST00000553278 TRANK1O15050 2925 aa0.45□□□□□ -2.34
SCFD1-208ENST00000553278 SETXQ7Z333 2677 aaKnown RBP0.45□□□□□ -2.34
SCFD1-208ENST00000553278 EIF2AK4Q9P2K8 1649 aaKnown RBP0.45□□□□□ -2.34
SCFD1-208ENST00000553278 MDN1Q9NU22 5596 aa0.45□□□□□ -2.34
SCFD1-208ENST00000553278 LMTK2Q8IWU2 1503 aa0.44□□□□□ -2.34
SCFD1-208ENST00000553278 DUOX2Q9NRD8 1548 aa0.44□□□□□ -2.34
SCFD1-208ENST00000553278 PRKDCP78527 4128 aaKnown RBP0.44□□□□□ -2.34
SCFD1-208ENST00000553278 MYCBP2O75592 4640 aa0.43□□□□□ -2.34
SCFD1-208ENST00000553278 COL7A1Q02388 2944 aa0.43□□□□□ -2.34
SCFD1-208ENST00000553278 SPRR2DP22532 72 aa0.42□□□□□ -2.34
SCFD1-208ENST00000553278 FLNCQ14315 2725 aa0.41□□□□□ -2.34
SCFD1-208ENST00000553278 LINC00158P58513 81 aa0.41□□□□□ -2.34
SCFD1-208ENST00000553278 RALGAPBQ86X10 1494 aa0.41□□□□□ -2.34
SCFD1-208ENST00000553278 DEFB135Q30KP9 77 aa0.4□□□□□ -2.35
SCFD1-208ENST00000553278 DCHS2Q6V1P9 2916 aa0.4□□□□□ -2.35
SCFD1-208ENST00000553278 PDE4DIPQ5VU43 2346 aa0.39□□□□□ -2.35
SCFD1-208ENST00000553278 HFM1A2PYH4 1435 aa0.38□□□□□ -2.35
SCFD1-208ENST00000553278 APC2O95996 2303 aa0.38□□□□□ -2.35
SCFD1-208ENST00000553278 CICQ96RK0 1608 aaPredicted RBP0.38□□□□□ -2.35
SCFD1-208ENST00000553278 ADAMTS12P58397 1594 aa0.37□□□□□ -2.35
SCFD1-208ENST00000553278 PARP4Q9UKK3 1724 aaKnown RBP0.37□□□□□ -2.35
SCFD1-208ENST00000553278 WIZO95785 1651 aa0.37□□□□□ -2.35
SCFD1-208ENST00000553278 MRPL33O75394 65 aaKnown RBP0.36□□□□□ -2.35
SCFD1-208ENST00000553278 ATXN8Q156A1 80 aa0.36□□□□□ -2.35
SCFD1-208ENST00000553278 UBL5Q9BZL1 73 aa0.36□□□□□ -2.35
SCFD1-208ENST00000553278 HILPDAQ9Y5L2 63 aa0.36□□□□□ -2.35
SCFD1-208ENST00000553278 GPR98Q8WXG9 6306 aa0.36□□□□□ -2.35
SCFD1-208ENST00000553278 CDC42BPGQ6DT37 1551 aa0.36□□□□□ -2.35
SCFD1-208ENST00000553278 FLNAP21333 2647 aaKnown RBP0.35□□□□□ -2.35
SCFD1-208ENST00000553278 LPAP08519 4548 aa0.35□□□□□ -2.35
SCFD1-208ENST00000553278 DEFB131BA0A096LNP1 70 aa0.35□□□□□ -2.35
SCFD1-208ENST00000553278 ENHOQ6UWT2 76 aa0.35□□□□□ -2.35
SCFD1-208ENST00000553278 PLXNC1O60486 1568 aa0.35□□□□□ -2.35
SCFD1-208ENST00000553278 MUC5ACP98088 5654 aa0.34□□□□□ -2.35
SCFD1-208ENST00000553278 DEPDC5O75140 1603 aa0.34□□□□□ -2.36
SCFD1-208ENST00000553278 THOC2Q8NI27 1593 aaKnown RBP0.33□□□□□ -2.36
SCFD1-208ENST00000553278 KCNQ1DNQ9H478 68 aa0.33□□□□□ -2.36
SCFD1-208ENST00000553278 TJP1Q07157 1748 aa0.33□□□□□ -2.36
SCFD1-208ENST00000553278 ITSN1Q15811 1721 aa0.33□□□□□ -2.36
SCFD1-208ENST00000553278 DIP2AQ14689 1571 aa0.32□□□□□ -2.36
SCFD1-208ENST00000553278 GNG13Q9P2W3 67 aa0.32□□□□□ -2.36
SCFD1-208ENST00000553278 NRAPQ86VF7 1730 aa0.31□□□□□ -2.36
SCFD1-208ENST00000553278 ASXL1Q8IXJ9 1541 aa0.31□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 128.4 ms