RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 REG3AQ06141 175 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 SNURFQ9Y675 71 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 BPY2O14599 106 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 SLPIP03973 132 aa3.58□□□□□ -1.84
USP28-213ENST00000544967 IGHV3-73A0A0B4J1V6 119 aa3.57□□□□□ -1.84
USP28-213ENST00000544967 IGHV3-11P01762 117 aa3.57□□□□□ -1.84
USP28-213ENST00000544967 DEFB136Q30KP8 78 aa3.57□□□□□ -1.84
USP28-213ENST00000544967 ZNF73O43830 326 aaPredicted RBP3.57□□□□□ -1.84
USP28-213ENST00000544967 CELA1Q9UNI1 258 aa3.57□□□□□ -1.84
USP28-213ENST00000544967 CMC4P56277 68 aaPredicted RBP3.57□□□□□ -1.84
USP28-213ENST00000544967 SEC61BP60468 96 aaKnown RBP3.57□□□□□ -1.84
USP28-213ENST00000544967 PRR3P79522 188 aaKnown RBP3.57□□□□□ -1.84
USP28-213ENST00000544967 A0A1B0GUV1 79 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 IGKV3-7A0A075B6H7 116 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 COX7BP24311 80 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 C6orf99Q4VX62 202 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 K7EIL1 84 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 IGLV6-57P01721 117 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 HAMPP81172 84 aa3.56□□□□□ -1.84
USP28-213ENST00000544967 CHCHD10Q8WYQ3 142 aaPredicted RBP3.56□□□□□ -1.84
USP28-213ENST00000544967 MP68P56378 58 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 FAM229BQ4G0N7 80 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 ZCCHC13Q8WW36 166 aaKnown RBP3.55□□□□□ -1.84
USP28-213ENST00000544967 COL7A1Q02388 2944 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 IGKV3-20P01619 116 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 Q6ZTI0 123 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 B9D2Q9BPU9 175 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 NOTCH3Q9UM47 2321 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 NBEAL1Q6ZS30 2694 aa3.55□□□□□ -1.84
USP28-213ENST00000544967 TRBV6-8A0A0A6YYG3 113 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 LINC00959A0A1B0GUT2 108 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 IGKV4-1P06312 121 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 ELOF1P60002 83 aaKnown RBP3.54□□□□□ -1.84
USP28-213ENST00000544967 MPLKIPQ8TAP9 179 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 DEFB131AP59861 70 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 ZNF706Q9Y5V0 76 aaPredicted RBP3.54□□□□□ -1.84
USP28-213ENST00000544967 NDUFB1O75438 58 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 ODF3L2Q3SX64 289 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 TOMM7Q9P0U1 55 aa3.54□□□□□ -1.84
USP28-213ENST00000544967 CSMD3Q7Z407 3707 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 WNK1Q9H4A3 2382 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 GVQW2A0A096LPI5 108 aaPredicted RBP3.53□□□□□ -1.84
USP28-213ENST00000544967 IGHV4-30-4P0DP06 118 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 UBE2BP63146 152 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 KIAA0087Q14695 138 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 C16orf74Q96GX8 76 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 CSNK1G2-AS1Q8NCQ2 148 aa3.53□□□□□ -1.84
USP28-213ENST00000544967 JMJD1CQ15652 2540 aa3.52□□□□□ -1.85
USP28-213ENST00000544967 A0A0J9YWU9 116 aa3.52□□□□□ -1.85
USP28-213ENST00000544967 GIG44P09565 113 aaPredicted RBP3.52□□□□□ -1.85
USP28-213ENST00000544967 Q6ZRP5 223 aa3.52□□□□□ -1.85
USP28-213ENST00000544967 SORL1Q92673 2214 aa3.52□□□□□ -1.85
USP28-213ENST00000544967 LCA10Q71F78 164 aa3.52□□□□□ -1.85
USP28-213ENST00000544967 TRGV1A0A0A0MS02 117 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 VPS13DQ5THJ4 4388 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 STARD9Q9P2P6 4700 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 CDK2AP2O75956 126 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 SPANXA2-OT1Q8N9U9 137 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 DIRC1Q969H9 104 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 LINC00588Q9Y4M8 146 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 H3BPC8 53 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 M0R2N4 97 aa3.51□□□□□ -1.85
USP28-213ENST00000544967 IGLV4-60A0A075B6I1 120 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 IGHV6-1A0A0B4J1U7 121 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 UBE2AP49459 152 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 PHF5AQ7RTV0 110 aaKnown RBP3.5□□□□□ -1.85
USP28-213ENST00000544967 LIMD2Q9BT23 127 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 Q6ZQY7 126 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 LINC00612Q8N6U2 182 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 Q9BRP9 147 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 FRAS1Q86XX4 4008 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 C1orf64Q8NEQ6 169 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 NOTCH1P46531 2555 aa3.5□□□□□ -1.85
USP28-213ENST00000544967 TRAV22A0A0B4J277 110 aa3.49□□□□□ -1.85
USP28-213ENST00000544967 IGLV9-49A0A0B4J1Y8 123 aa3.49□□□□□ -1.85
USP28-213ENST00000544967 PSCAO43653 123 aa3.49□□□□□ -1.85
USP28-213ENST00000544967 HTN1P15515 57 aa3.49□□□□□ -1.85
USP28-213ENST00000544967 ATP11AUNQ6ZP68 121 aa3.49□□□□□ -1.85
USP28-213ENST00000544967 IGLV5-48A0A075B6I7 105 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 TRGV2A0A075B6R0 118 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 ETDCA0A1B0GVM5 59 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 PSPHP1O15172 72 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 TRGV4A0A0C4DH28 118 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 HIGD2AQ9BW72 106 aa3.48□□□□□ -1.85
USP28-213ENST00000544967 PLECQ15149 4684 aaKnown RBP3.48□□□□□ -1.85
USP28-213ENST00000544967 SYCNQ0VAF6 134 aa3.47□□□□□ -1.85
USP28-213ENST00000544967 HIGD2BQ4VC39 106 aa3.47□□□□□ -1.85
USP28-213ENST00000544967 SPTSSBQ8NFR3 76 aa3.47□□□□□ -1.85
USP28-213ENST00000544967 LOC101927531A0A1B0GV80 90 aa3.47□□□□□ -1.85
USP28-213ENST00000544967 REG3GQ6UW15 175 aa3.47□□□□□ -1.85
USP28-213ENST00000544967 SACSQ9NZJ4 4579 aa3.46□□□□□ -1.85
USP28-213ENST00000544967 A0A087X002 238 aa3.46□□□□□ -1.85
USP28-213ENST00000544967 Q5VV11 94 aa3.46□□□□□ -1.85
USP28-213ENST00000544967 Q8NAQ8 132 aa3.46□□□□□ -1.85
USP28-213ENST00000544967 KCNQ1DNQ9H478 68 aa3.46□□□□□ -1.85
USP28-213ENST00000544967 DNAH17Q9UFH2 4485 aa3.46□□□□□ -1.86
USP28-213ENST00000544967 NKAPP1Q8N9T2 125 aa3.46□□□□□ -1.86
USP28-213ENST00000544967 LINC01554Q52M75 96 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 Q8NDZ9 215 aa3.45□□□□□ -1.86
USP28-213ENST00000544967 SPRR4Q96PI1 79 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms