RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	LY6G6C	O95867	125 aa		3.24	□□□□□ -1.89
CD44-231	ENST00000531110	PRB3	Q04118	309 aa	Predicted RBP	3.24	□□□□□ -1.89
CD44-231	ENST00000531110	KRTAP11-1	Q8IUC1	163 aa		3.24	□□□□□ -1.89
CD44-231	ENST00000531110	SDK1	Q7Z5N4	2213 aa		3.23	□□□□□ -1.89
CD44-231	ENST00000531110	CIRBP-AS1	Q8TBR5	109 aa		3.23	□□□□□ -1.89
CD44-231	ENST00000531110	DEFB104A	Q8WTQ1	72 aa		3.23	□□□□□ -1.89
CD44-231	ENST00000531110	RHPN1-AS1	Q9BWJ2	59 aa		3.23	□□□□□ -1.89
CD44-231	ENST00000531110	DOPEY2	Q9Y3R5	2298 aa		3.22	□□□□□ -1.89
CD44-231	ENST00000531110	PRB1	P04280	392 aa		3.22	□□□□□ -1.89
CD44-231	ENST00000531110	DEFB108B	Q8NET1	73 aa		3.22	□□□□□ -1.89
CD44-231	ENST00000531110	CCL19	Q99731	98 aa		3.22	□□□□□ -1.89
CD44-231	ENST00000531110	ICE1	Q9Y2F5	2266 aa		3.22	□□□□□ -1.89
CD44-231	ENST00000531110	WNK2	Q9Y3S1	2297 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	INS	P01308	110 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	PRB2	P02812	416 aa	Predicted RBP	3.21	□□□□□ -1.9
CD44-231	ENST00000531110	KRTAP13-3	Q3SY46	172 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	WFDC13	Q8IUB5	93 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	LINC00304	Q8N9R0	145 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	PRO3102	Q9H379	93 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	C6orf48	Q9UBA6	75 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	PCNT	O95613	3336 aa		3.21	□□□□□ -1.9
CD44-231	ENST00000531110	ABCA4	P78363	2273 aa		3.2	□□□□□ -1.9
CD44-231	ENST00000531110	C16orf74	Q96GX8	76 aa		3.2	□□□□□ -1.9
CD44-231	ENST00000531110	MMP24-AS1	A0A0U1RRL7	71 aa		3.19	□□□□□ -1.9
CD44-231	ENST00000531110		A0A1B0GU33	70 aa		3.19	□□□□□ -1.9
CD44-231	ENST00000531110	SPRR1A	P35321	89 aa		3.19	□□□□□ -1.9
CD44-231	ENST00000531110	SPINT4	Q6UDR6	99 aa		3.19	□□□□□ -1.9
CD44-231	ENST00000531110	WFDC10B	Q8IUB3	73 aa		3.19	□□□□□ -1.9
CD44-231	ENST00000531110	GOLGB1	Q14789	3259 aa	Known RBP	3.19	□□□□□ -1.9
CD44-231	ENST00000531110	TECTA	O75443	2155 aa		3.18	□□□□□ -1.9
CD44-231	ENST00000531110	SPINK13	Q1W4C9	94 aa		3.18	□□□□□ -1.9
CD44-231	ENST00000531110	COX6B2	Q6YFQ2	88 aa		3.18	□□□□□ -1.9
CD44-231	ENST00000531110	ALMS1	Q8TCU4	4167 aa		3.18	□□□□□ -1.9
CD44-231	ENST00000531110		H3BUX3	64 aa		3.17	□□□□□ -1.9
CD44-231	ENST00000531110		Q6ZRX8	168 aa		3.17	□□□□□ -1.9
CD44-231	ENST00000531110		Q96NJ1	140 aa		3.17	□□□□□ -1.9
CD44-231	ENST00000531110	ANKRD17	O75179	2603 aa	Known RBP	3.16	□□□□□ -1.9
CD44-231	ENST00000531110	WDR87	Q6ZQQ6	2873 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	AHCTF1	Q8WYP5	2266 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110		A0A0G2JQZ4	141 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	NBDY	A0A0U1RRE5	68 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110		A0A1W2PNN7	141 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	DEFB109B	Q30KR1	87 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	KRTAP5-4	Q6L8H1	288 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	CLPSL2	Q6UWE3	100 aa		3.16	□□□□□ -1.9
CD44-231	ENST00000531110	RPL37A	P61513	92 aa	Known RBP	3.15	□□□□□ -1.91
CD44-231	ENST00000531110	PCOTH	Q58A44	107 aa		3.15	□□□□□ -1.91
CD44-231	ENST00000531110	C5orf56	Q8N8D9	126 aa		3.15	□□□□□ -1.91
CD44-231	ENST00000531110	SPTBN1	Q01082	2364 aa	Known RBP	3.15	□□□□□ -1.91
CD44-231	ENST00000531110	DEFB116	Q30KQ4	102 aa		3.14	□□□□□ -1.91
CD44-231	ENST00000531110	SPRR1B	P22528	89 aa		3.13	□□□□□ -1.91
CD44-231	ENST00000531110	DEFB133	Q30KQ1	61 aa		3.13	□□□□□ -1.91
CD44-231	ENST00000531110	PSORS1C2	Q9UIG4	136 aa		3.13	□□□□□ -1.91
CD44-231	ENST00000531110	DEFB1	P60022	68 aa		3.12	□□□□□ -1.91
CD44-231	ENST00000531110	DEFB119	Q8N690	84 aa		3.12	□□□□□ -1.91
CD44-231	ENST00000531110	KRTAP4-4	Q9BYR3	166 aa		3.12	□□□□□ -1.91
CD44-231	ENST00000531110	WNK1	Q9H4A3	2382 aa		3.11	□□□□□ -1.91
CD44-231	ENST00000531110	IGFL1	Q6UW32	110 aa		3.11	□□□□□ -1.91
CD44-231	ENST00000531110	MRPL34	Q9BQ48	92 aa	Known RBP	3.11	□□□□□ -1.91
CD44-231	ENST00000531110	CACNA1B	Q00975	2339 aa		3.11	□□□□□ -1.91
CD44-231	ENST00000531110	TNRC18	O15417	2968 aa	Predicted RBP	3.11	□□□□□ -1.91
CD44-231	ENST00000531110	CUL9	Q8IWT3	2517 aa		3.1	□□□□□ -1.91
CD44-231	ENST00000531110	UNQ6190/PRO20217	Q6UXQ8	127 aa		3.1	□□□□□ -1.91
CD44-231	ENST00000531110		G3V318	75 aa		3.09	□□□□□ -1.91
CD44-231	ENST00000531110	LY6E	Q16553	131 aa		3.09	□□□□□ -1.91
CD44-231	ENST00000531110	LCE3A	Q5TA76	89 aa		3.08	□□□□□ -1.92
CD44-231	ENST00000531110	PRO2289	Q9P1D8	64 aa		3.08	□□□□□ -1.92
CD44-231	ENST00000531110	CNOT1	A5YKK6	2376 aa	Known RBP	3.08	□□□□□ -1.92
CD44-231	ENST00000531110	SSBP3-AS1	Q7Z2R9	100 aa		3.06	□□□□□ -1.92
CD44-231	ENST00000531110	TPR	P12270	2363 aa	Known RBP	3.05	□□□□□ -1.92
CD44-231	ENST00000531110		H0YAA0	97 aa		3.05	□□□□□ -1.92
CD44-231	ENST00000531110	DEFB105A	Q8NG35	78 aa		3.05	□□□□□ -1.92
CD44-231	ENST00000531110		U3KQA8	63 aa		3.04	□□□□□ -1.92
CD44-231	ENST00000531110		Q6ZSA8	131 aa		3.03	□□□□□ -1.92
CD44-231	ENST00000531110	TRIOBP	Q9H2D6	2365 aa		3.02	□□□□□ -1.93
CD44-231	ENST00000531110	PRO0255	Q9UI72	69 aa		3.02	□□□□□ -1.93
CD44-231	ENST00000531110	MGA	Q8IWI9	3026 aa		3.02	□□□□□ -1.93
CD44-231	ENST00000531110	HTN1	P15515	57 aa		3.01	□□□□□ -1.93
CD44-231	ENST00000531110	DEFB103A	P81534	67 aa		3.01	□□□□□ -1.93
CD44-231	ENST00000531110	CRIPT	Q9P021	101 aa		3.01	□□□□□ -1.93
CD44-231	ENST00000531110	SPTBN2	O15020	2390 aa		3.01	□□□□□ -1.93
CD44-231	ENST00000531110	FAM186A	A6NE01	2351 aa		3	□□□□□ -1.93
CD44-231	ENST00000531110	KRTAP5-9	P26371	169 aa		3	□□□□□ -1.93
CD44-231	ENST00000531110	KRTAP10-8	P60410	259 aa		3	□□□□□ -1.93
CD44-231	ENST00000531110	H1FX-AS1	Q4G0G2	97 aa		3	□□□□□ -1.93
CD44-231	ENST00000531110	LELP1	Q5T871	98 aa		3	□□□□□ -1.93
CD44-231	ENST00000531110	COL6A6	A6NMZ7	2263 aa		2.99	□□□□□ -1.93
CD44-231	ENST00000531110	TPRXL	Q17RH7	258 aa		2.98	□□□□□ -1.93
CD44-231	ENST00000531110	PLAC4	Q8WY50	150 aa		2.98	□□□□□ -1.93
CD44-231	ENST00000531110	NOP10	Q9NPE3	64 aa	Known RBP	2.98	□□□□□ -1.93
CD44-231	ENST00000531110	INE1	O15225	51 aa		2.97	□□□□□ -1.93
CD44-231	ENST00000531110	COL6A3	P12111	3177 aa		2.97	□□□□□ -1.93
CD44-231	ENST00000531110	CACNA1E	Q15878	2313 aa		2.97	□□□□□ -1.93
CD44-231	ENST00000531110	RPL37	P61927	97 aa	Known RBP	2.96	□□□□□ -1.94
CD44-231	ENST00000531110	C10orf99	Q6UWK7	81 aa		2.96	□□□□□ -1.94
CD44-231	ENST00000531110	SZT2	Q5T011	3432 aa		2.96	□□□□□ -1.94
CD44-231	ENST00000531110	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	2.96	□□□□□ -1.94
CD44-231	ENST00000531110	OBSCN	Q5VST9	7968 aa		2.95	□□□□□ -1.94
CD44-231	ENST00000531110	CACNA1A	O00555	2505 aa		2.95	□□□□□ -1.94
CD44-231	ENST00000531110	CEP290	O15078	2479 aa		2.95	□□□□□ -1.94

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