RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 KRTAP7-1Q8IUC3 87 aa13.3□□□□□ -0.28
USP39-203ENST00000409470 IGLV1-50A0A075B6I6 118 aa13.29□□□□□ -0.28
USP39-203ENST00000409470 GHRHP01286 108 aa13.29□□□□□ -0.28
USP39-203ENST00000409470 MRPL55Q7Z7F7 128 aaKnown RBP13.29□□□□□ -0.28
USP39-203ENST00000409470 SMCR5Q8TEV8 140 aa13.28□□□□□ -0.28
USP39-203ENST00000409470 A0A096LNI7 61 aa13.27□□□□□ -0.28
USP39-203ENST00000409470 IGKV2-24A0A0C4DH68 120 aa13.27□□□□□ -0.29
USP39-203ENST00000409470 C16orf90A8MZG2 172 aa13.27□□□□□ -0.29
USP39-203ENST00000409470 PRYO14603 147 aa13.27□□□□□ -0.29
USP39-203ENST00000409470 CCKP06307 115 aa13.27□□□□□ -0.29
USP39-203ENST00000409470 M0R2N4 97 aa13.26□□□□□ -0.29
USP39-203ENST00000409470 STARD9Q9P2P6 4700 aa13.26□□□□□ -0.29
USP39-203ENST00000409470 RBM3P98179 157 aaKnown RBP13.25□□□□□ -0.29
USP39-203ENST00000409470 LRCOL1A6NCL2 159 aa13.24□□□□□ -0.29
USP39-203ENST00000409470 LINC00643Q86TS7 51 aa13.24□□□□□ -0.29
USP39-203ENST00000409470 SDIM1Q6ZPB5 146 aa13.23□□□□□ -0.29
USP39-203ENST00000409470 Q6ZRN7 208 aaPredicted RBP13.23□□□□□ -0.29
USP39-203ENST00000409470 ETDCA0A1B0GVM5 59 aa13.22□□□□□ -0.29
USP39-203ENST00000409470 LINC00846Q9NV44 126 aa13.2□□□□□ -0.3
USP39-203ENST00000409470 B5MCH6 92 aa13.2□□□□□ -0.3
USP39-203ENST00000409470 SPRR1AP35321 89 aa13.2□□□□□ -0.3
USP39-203ENST00000409470 Q6ZRX8 168 aa13.2□□□□□ -0.3
USP39-203ENST00000409470 KRTAP4-16G5E9R7 235 aaPredicted RBP13.19□□□□□ -0.3
USP39-203ENST00000409470 Q6Q795 121 aa13.19□□□□□ -0.3
USP39-203ENST00000409470 DSCR8Q96T75 97 aa13.19□□□□□ -0.3
USP39-203ENST00000409470 DHRS4-AS1Q9P1J3 65 aa13.18□□□□□ -0.3
USP39-203ENST00000409470 VPS13DQ5THJ4 4388 aa13.18□□□□□ -0.3
USP39-203ENST00000409470 A0A1W2PNN7 141 aa13.18□□□□□ -0.3
USP39-203ENST00000409470 KRTAP21-3Q3LHN1 58 aa13.18□□□□□ -0.3
USP39-203ENST00000409470 C9orf163Q8N9P6 203 aa13.17□□□□□ -0.3
USP39-203ENST00000409470 LOC110117498A0A087WWA1 95 aa13.17□□□□□ -0.3
USP39-203ENST00000409470 NDUFV3P56181 108 aaKnown RBP13.17□□□□□ -0.3
USP39-203ENST00000409470 Q6ZQT0 140 aa13.17□□□□□ -0.3
USP39-203ENST00000409470 TRBV7-7A0A0K0K1E9 115 aa13.16□□□□□ -0.3
USP39-203ENST00000409470 REG3GQ6UW15 175 aa13.16□□□□□ -0.3
USP39-203ENST00000409470 CHTF8P0CG12 524 aa13.15□□□□□ -0.3
USP39-203ENST00000409470 PKIGQ9Y2B9 76 aa13.15□□□□□ -0.3
USP39-203ENST00000409470 DEFB105AQ8NG35 78 aa13.15□□□□□ -0.3
USP39-203ENST00000409470 Q9BRP9 147 aa13.15□□□□□ -0.3
USP39-203ENST00000409470 PDE6GP18545 87 aa13.13□□□□□ -0.31
USP39-203ENST00000409470 UBE2BP63146 152 aa13.11□□□□□ -0.31
USP39-203ENST00000409470 IMUPQ9GZP8 106 aa13.11□□□□□ -0.31
USP39-203ENST00000409470 TRBV7-4A0A0J9YYF1 115 aa13.08□□□□□ -0.31
USP39-203ENST00000409470 Q6ZR54 194 aa13.08□□□□□ -0.31
USP39-203ENST00000409470 Q8N377 158 aa13.08□□□□□ -0.31
USP39-203ENST00000409470 A0A087WTM6 91 aa13.08□□□□□ -0.32
USP39-203ENST00000409470 LINC00474Q9P2X8 69 aa13.08□□□□□ -0.32
USP39-203ENST00000409470 Q6JHZ5 121 aa13.07□□□□□ -0.32
USP39-203ENST00000409470 PHF5AQ7RTV0 110 aaKnown RBP13.06□□□□□ -0.32
USP39-203ENST00000409470 FBN3Q75N90 2809 aa13.06□□□□□ -0.32
USP39-203ENST00000409470 IGKV3D-7A0A0C4DH55 119 aa13.06□□□□□ -0.32
USP39-203ENST00000409470 LINC01547P58512 204 aaPredicted RBP13.06□□□□□ -0.32
USP39-203ENST00000409470 UBL5Q9BZL1 73 aa13.06□□□□□ -0.32
USP39-203ENST00000409470 ST20-AS1Q8NBB2 130 aa13.05□□□□□ -0.32
USP39-203ENST00000409470 FAM19A1Q7Z5A9 133 aa13.05□□□□□ -0.32
USP39-203ENST00000409470 ERC2-IT1O76042 136 aa13.04□□□□□ -0.32
USP39-203ENST00000409470 LY6G6CO95867 125 aa13.04□□□□□ -0.32
USP39-203ENST00000409470 DPH3Q96FX2 82 aa13.04□□□□□ -0.32
USP39-203ENST00000409470 ANAPC13Q9BS18 74 aa13.04□□□□□ -0.32
USP39-203ENST00000409470 IGLV5-48A0A075B6I7 105 aa13.01□□□□□ -0.33
USP39-203ENST00000409470 PRLHP81277 87 aa13.01□□□□□ -0.33
USP39-203ENST00000409470 PANO1I0J062 215 aa13□□□□□ -0.33
USP39-203ENST00000409470 C1orf134Q5TEV5 83 aa13□□□□□ -0.33
USP39-203ENST00000409470 C3orf22Q8N5N4 141 aa13□□□□□ -0.33
USP39-203ENST00000409470 FAM236AA0A1B0GUQ0 79 aa12.98□□□□□ -0.33
USP39-203ENST00000409470 FAM236BA0A1B0GV22 79 aa12.98□□□□□ -0.33
USP39-203ENST00000409470 KRTAP11-1Q8IUC1 163 aa12.98□□□□□ -0.33
USP39-203ENST00000409470 WWC2-AS2Q96NR7 200 aa12.98□□□□□ -0.33
USP39-203ENST00000409470 KMT2AQ03164 3969 aa12.98□□□□□ -0.33
USP39-203ENST00000409470 FUSP35637 526 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP39-203ENST00000409470 RTL8CO15255 209 aa12.97□□□□□ -0.33
USP39-203ENST00000409470 ATP5EP2Q5VTU8 51 aa12.97□□□□□ -0.33
USP39-203ENST00000409470 SPACA4Q8TDM5 124 aa12.96□□□□□ -0.34
USP39-203ENST00000409470 HIGD2AQ9BW72 106 aa12.96□□□□□ -0.34
USP39-203ENST00000409470 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.96□□□□□ -0.34
USP39-203ENST00000409470 Q6ZVQ6 151 aa12.94□□□□□ -0.34
USP39-203ENST00000409470 LINC00476Q8WZB0 136 aa12.93□□□□□ -0.34
USP39-203ENST00000409470 DNAH2Q9P225 4427 aa12.93□□□□□ -0.34
USP39-203ENST00000409470 TGP01266 2768 aa12.92□□□□□ -0.34
USP39-203ENST00000409470 HIST1H4AP62805 103 aaKnown RBP12.91□□□□□ -0.34
USP39-203ENST00000409470 HAMPP81172 84 aa12.91□□□□□ -0.34
USP39-203ENST00000409470 EPM2AB3EWF7 344 aa12.9□□□□□ -0.34
USP39-203ENST00000409470 TNP2Q05952 138 aa12.9□□□□□ -0.34
USP39-203ENST00000409470 UBE2AP49459 152 aa12.89□□□□□ -0.35
USP39-203ENST00000409470 IGLV5-52A0A0A0MRZ9 124 aa12.89□□□□□ -0.35
USP39-203ENST00000409470 H0Y9J4 135 aa12.89□□□□□ -0.35
USP39-203ENST00000409470 C1orf137Q5JT78 98 aa12.89□□□□□ -0.35
USP39-203ENST00000409470 A0A087WVE0 104 aa12.88□□□□□ -0.35
USP39-203ENST00000409470 F8WEM9 126 aa12.87□□□□□ -0.35
USP39-203ENST00000409470 SMIM29Q86T20 159 aa12.87□□□□□ -0.35
USP39-203ENST00000409470 BCE1O60756 84 aa12.86□□□□□ -0.35
USP39-203ENST00000409470 C3orf84H3BNL1 204 aa12.84□□□□□ -0.35
USP39-203ENST00000409470 DNAH17Q9UFH2 4485 aa12.84□□□□□ -0.35
USP39-203ENST00000409470 HECTD4Q9Y4D8 3996 aa12.84□□□□□ -0.35
USP39-203ENST00000409470 A0A1W2PNM2 257 aa12.82□□□□□ -0.36
USP39-203ENST00000409470 CXCL6P80162 114 aa12.81□□□□□ -0.36
USP39-203ENST00000409470 NREPQ16612 68 aa12.81□□□□□ -0.36
USP39-203ENST00000409470 Q8NBF4 154 aa12.8□□□□□ -0.36
USP39-203ENST00000409470 DNAH6Q9C0G6 4158 aa12.8□□□□□ -0.36
USP39-203ENST00000409470 ATOX1O00244 68 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms