RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 PLAC8Q9NZF1 115 aa5.07□□□□□ -1.6
USP48-203ENST00000374732 KRTAP25-1Q3LHN0 102 aa5.06□□□□□ -1.6
USP48-203ENST00000374732 A0A1B0GVX0 72 aa5.06□□□□□ -1.6
USP48-203ENST00000374732 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.06□□□□□ -1.63e-9■■■■■ 32.2
USP48-203ENST00000374732 A8MTW9 85 aa5.05□□□□□ -1.6
USP48-203ENST00000374732 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.05□□□□□ -1.6
USP48-203ENST00000374732 LINC00315P59091 139 aa5.05□□□□□ -1.6
USP48-203ENST00000374732 CNBPP62633 177 aaKnown RBP5.05□□□□□ -1.6
USP48-203ENST00000374732 CHCHD7Q9BUK0 85 aa5.05□□□□□ -1.6
USP48-203ENST00000374732 IGLV4-60A0A075B6I1 120 aa5.05□□□□□ -1.6
USP48-203ENST00000374732 FBN2P35556 2912 aa5.05□□□□□ -1.6
USP48-203ENST00000374732 ABCA12Q86UK0 2595 aa5.04□□□□□ -1.6
USP48-203ENST00000374732 C10orf99Q6UWK7 81 aa5.04□□□□□ -1.6
USP48-203ENST00000374732 Q8N9L7 120 aa5.04□□□□□ -1.6
USP48-203ENST00000374732 CSMD1Q96PZ7 3565 aa5.04□□□□□ -1.6
USP48-203ENST00000374732 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.04□□□□□ -1.6
USP48-203ENST00000374732 DEFB1P60022 68 aa5.04□□□□□ -1.6
USP48-203ENST00000374732 H0Y9P7 68 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 OTOGQ6ZRI0 2925 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 M0R2N4 97 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 PDE6GP18545 87 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 C4orf3Q8WVX3 66 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 PRR34Q9NV39 138 aa5.03□□□□□ -1.6
USP48-203ENST00000374732 IGKV3-7A0A075B6H7 116 aa5.02□□□□□ -1.61
USP48-203ENST00000374732 POLR2KP53803 58 aaKnown RBP5.02□□□□□ -1.61
USP48-203ENST00000374732 COA5Q86WW8 74 aa5.02□□□□□ -1.61
USP48-203ENST00000374732 AKAP6Q13023 2319 aa5.02□□□□□ -1.61
USP48-203ENST00000374732 ANK2Q01484 3957 aa5.02□□□□□ -1.61
USP48-203ENST00000374732 MAPK1IP1LQ8NDC0 245 aa5.02□□□□□ -1.61
USP48-203ENST00000374732 RPL39P62891 51 aaKnown RBP5.02□□□□□ -1.61
USP48-203ENST00000374732 RPL39LQ96EH5 51 aaKnown RBP5.02□□□□□ -1.61
USP48-203ENST00000374732 IGKV4-1P06312 121 aa5.01□□□□□ -1.61
USP48-203ENST00000374732 SUMO4Q6EEV6 95 aa5.01□□□□□ -1.61
USP48-203ENST00000374732 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.01□□□□□ -1.61
USP48-203ENST00000374732 USP9XQ93008 2570 aaPredicted RBP5.01□□□□□ -1.61
USP48-203ENST00000374732 LINC00959A0A1B0GUT2 108 aa5.01□□□□□ -1.61
USP48-203ENST00000374732 Q6ZSN1 163 aa5.01□□□□□ -1.61
USP48-203ENST00000374732 H3BPC8 53 aa5□□□□□ -1.61
USP48-203ENST00000374732 KPRPQ5T749 579 aaPredicted RBP5□□□□□ -1.61
USP48-203ENST00000374732 VPS13CQ709C8 3753 aa5□□□□□ -1.61
USP48-203ENST00000374732 IGLV10-54A0A075B6I4 117 aa5□□□□□ -1.61
USP48-203ENST00000374732 INSP01308 110 aa5□□□□□ -1.61
USP48-203ENST00000374732 SMIM11BQ8TCY0 68 aa5□□□□□ -1.61
USP48-203ENST00000374732 MYO9AB2RTY4 2548 aa5□□□□□ -1.61
USP48-203ENST00000374732 M0QY20 66 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 SPANXA2-OT1Q8N9U9 137 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 Q8NBF4 154 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 TRGV4A0A0C4DH28 118 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 IGKV3OR2-268A0A0C4DH90 116 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 TRBV6-4A0A1B0GX49 114 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 SLURP1P55000 103 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 SPINK13Q1W4C9 94 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 SVEP1Q4LDE5 3571 aa4.99□□□□□ -1.61
USP48-203ENST00000374732 SPTAN1Q13813 2472 aaKnown RBP4.98□□□□□ -1.61
USP48-203ENST00000374732 LINC00612Q8N6U2 182 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 DEFB104AQ8WTQ1 72 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 COL12A1Q99715 3063 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 FBN3Q75N90 2809 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 TRGV2A0A075B6R0 118 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 LOC110117498A0A087WWA1 95 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 DEFB114Q30KQ6 69 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 ST20-AS1Q8NBB2 130 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 FLNCQ14315 2725 aa4.98□□□□□ -1.61
USP48-203ENST00000374732 HECTD1Q9ULT8 2610 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 DEFB131AP59861 70 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 CELSR1Q9NYQ6 3014 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 ETDCA0A1B0GVM5 59 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 KRTAP26-1Q6PEX3 210 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 C9orf163Q8N9P6 203 aa4.97□□□□□ -1.61
USP48-203ENST00000374732 APCP25054 2843 aa4.96□□□□□ -1.61
USP48-203ENST00000374732 A0A087WSZ3 146 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 SMIM1B2RUZ4 78 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 CCL18P55774 89 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 CELSR2Q9HCU4 2923 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 IGLV1-50A0A075B6I6 118 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 DEFB136Q30KP8 78 aa4.96□□□□□ -1.62
USP48-203ENST00000374732 FLNBO75369 2602 aaKnown RBP4.95□□□□□ -1.62
USP48-203ENST00000374732 NBPF19A0A087WUL8 3843 aa4.95□□□□□ -1.62
USP48-203ENST00000374732 IGLV5-39A0A0G2JS06 123 aa4.95□□□□□ -1.62
USP48-203ENST00000374732 SPINT4Q6UDR6 99 aa4.95□□□□□ -1.62
USP48-203ENST00000374732 CAMK2N1Q7Z7J9 78 aa4.95□□□□□ -1.62
USP48-203ENST00000374732 UTP20O75691 2785 aaKnown RBP4.95□□□□□ -1.62
USP48-203ENST00000374732 ZNF861PO60384 105 aa4.94□□□□□ -1.62
USP48-203ENST00000374732 TEX15Q9BXT5 2789 aa4.94□□□□□ -1.62
USP48-203ENST00000374732 KRTAP24-1Q3LI83 254 aa4.94□□□□□ -1.62
USP48-203ENST00000374732 SPG11Q96JI7 2443 aa4.94□□□□□ -1.62
USP48-203ENST00000374732 C15orf56Q8N910 161 aa4.94□□□□□ -1.62
USP48-203ENST00000374732 CSPG4Q6UVK1 2322 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 H3BQ85 93 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 NDUFA1O15239 70 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 C10orf25Q5T742 122 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 C1orf137Q5JT78 98 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 LRRK2Q5S007 2527 aa4.93□□□□□ -1.62
USP48-203ENST00000374732 NUPR2A6NF83 97 aa4.92□□□□□ -1.62
USP48-203ENST00000374732 CRYBG3Q68DQ2 2970 aa4.92□□□□□ -1.62
USP48-203ENST00000374732 ANK3Q12955 4377 aaKnown RBP4.92□□□□□ -1.62
USP48-203ENST00000374732 SPATA8Q6RVD6 105 aa4.92□□□□□ -1.62
USP48-203ENST00000374732 SPRR4Q96PI1 79 aa4.92□□□□□ -1.62
USP48-203ENST00000374732 KRTAP23-1A1A580 65 aa4.91□□□□□ -1.62
USP48-203ENST00000374732 LINC00158P58513 81 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms