RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 DEFB105AQ8NG35 78 aa7□□□□□ -1.29
USP28-201ENST00000003302 RPL37AP8A6NKH3 93 aa7□□□□□ -1.29
USP28-201ENST00000003302 KRTAP7-1Q8IUC3 87 aa7□□□□□ -1.29
USP28-201ENST00000003302 KMT2AQ03164 3969 aa6.99□□□□□ -1.29
USP28-201ENST00000003302 C3orf84H3BNL1 204 aa6.99□□□□□ -1.29
USP28-201ENST00000003302 ZNF561-AS1K7EIQ3 104 aa6.99□□□□□ -1.29
USP28-201ENST00000003302 RMI2Q96E14 147 aa6.99□□□□□ -1.29
USP28-201ENST00000003302 C4orf26Q17RF5 130 aa6.98□□□□□ -1.29
USP28-201ENST00000003302 BPY2O14599 106 aa6.98□□□□□ -1.29
USP28-201ENST00000003302 UBL5Q9BZL1 73 aa6.98□□□□□ -1.29
USP28-201ENST00000003302 DIRC1Q969H9 104 aa6.97□□□□□ -1.29
USP28-201ENST00000003302 TGP01266 2768 aa6.97□□□□□ -1.29
USP28-201ENST00000003302 ELOF1P60002 83 aaKnown RBP6.97□□□□□ -1.29
USP28-201ENST00000003302 IGKV2D-24A0A075B6R9 120 aa6.97□□□□□ -1.29
USP28-201ENST00000003302 TRBV7-4A0A0J9YYF1 115 aa6.96□□□□□ -1.29
USP28-201ENST00000003302 ST20-AS1Q8NBB2 130 aa6.96□□□□□ -1.3
USP28-201ENST00000003302 STARD9Q9P2P6 4700 aa6.96□□□□□ -1.3
USP28-201ENST00000003302 LINC00528Q8N1L1 170 aa6.95□□□□□ -1.3
USP28-201ENST00000003302 LOC110117498A0A087WWA1 95 aa6.95□□□□□ -1.3
USP28-201ENST00000003302 COX7BP24311 80 aa6.95□□□□□ -1.3
USP28-201ENST00000003302 H7BZZ5 65 aa6.94□□□□□ -1.3
USP28-201ENST00000003302 GVQW2A0A096LPI5 108 aaPredicted RBP6.94□□□□□ -1.3
USP28-201ENST00000003302 ERC2-IT1O76042 136 aa6.94□□□□□ -1.3
USP28-201ENST00000003302 Q5XG85 94 aa6.93□□□□□ -1.3
USP28-201ENST00000003302 NDUFC2-KCTD14E9PQ53 114 aa6.93□□□□□ -1.3
USP28-201ENST00000003302 Q9BRP9 147 aa6.93□□□□□ -1.3
USP28-201ENST00000003302 Q8N377 158 aa6.92□□□□□ -1.3
USP28-201ENST00000003302 PRKDCP78527 4128 aaKnown RBP6.92□□□□□ -1.3
USP28-201ENST00000003302 C7orf33Q8WU49 177 aa6.92□□□□□ -1.3
USP28-201ENST00000003302 J3KT08 172 aa6.91□□□□□ -1.3
USP28-201ENST00000003302 HRCT1Q6UXD1 115 aa6.91□□□□□ -1.3
USP28-201ENST00000003302 DEFB131BA0A096LNP1 70 aa6.9□□□□□ -1.31
USP28-201ENST00000003302 MRAPQ8TCY5 172 aa6.9□□□□□ -1.31
USP28-201ENST00000003302 KRTAP24-1Q3LI83 254 aa6.89□□□□□ -1.31
USP28-201ENST00000003302 C1orf43Q9BWL3 253 aa6.89□□□□□ -1.31
USP28-201ENST00000003302 TMEM258P61165 79 aa6.88□□□□□ -1.31
USP28-201ENST00000003302 EGFEM1PQ0D2K5 195 aa6.88□□□□□ -1.31
USP28-201ENST00000003302 M0R378 163 aa6.88□□□□□ -1.31
USP28-201ENST00000003302 DEFB116Q30KQ4 102 aa6.88□□□□□ -1.31
USP28-201ENST00000003302 F8WEM9 126 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 LINC00474Q9P2X8 69 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 FBN3Q75N90 2809 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 IGKV4-1P06312 121 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 SYCNQ0VAF6 134 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 LINC00588Q9Y4M8 146 aa6.87□□□□□ -1.31
USP28-201ENST00000003302 A0A1W2PNM2 257 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 KRTAP1-5Q9BYS1 174 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 HECTD4Q9Y4D8 3996 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 DNAH2Q9P225 4427 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 FAM229BQ4G0N7 80 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 ATP5EP2Q5VTU8 51 aa6.86□□□□□ -1.31
USP28-201ENST00000003302 WIPF1O43516 503 aa6.85□□□□□ -1.31
USP28-201ENST00000003302 KRTAP11-1Q8IUC1 163 aa6.85□□□□□ -1.31
USP28-201ENST00000003302 TRBV7-6A0A0J9YX20 115 aa6.85□□□□□ -1.31
USP28-201ENST00000003302 KRTAP4-16G5E9R7 235 aaPredicted RBP6.85□□□□□ -1.31
USP28-201ENST00000003302 DNAH6Q9C0G6 4158 aa6.84□□□□□ -1.31
USP28-201ENST00000003302 C11orf45Q8TAV5 145 aa6.84□□□□□ -1.31
USP28-201ENST00000003302 DNHD1Q96M86 4753 aa6.84□□□□□ -1.31
USP28-201ENST00000003302 LINC01556Q5JQF7 62 aa6.83□□□□□ -1.32
USP28-201ENST00000003302 TRAV7A0A075B6U4 112 aa6.83□□□□□ -1.32
USP28-201ENST00000003302 FUSP35637 526 aaKnown RBP eCLIP6.83□□□□□ -1.32
USP28-201ENST00000003302 FP248Q71RG6 208 aaPredicted RBP6.83□□□□□ -1.32
USP28-201ENST00000003302 KCNQ1DNQ9H478 68 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 CXCL6P80162 114 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 DNAH17Q9UFH2 4485 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 DNAH8Q96JB1 4490 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 FAM236DA0A1B0GTK5 79 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 FAM236CP0DP71 79 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 NREPQ16612 68 aa6.82□□□□□ -1.32
USP28-201ENST00000003302 RPS28P62857 69 aaKnown RBP6.81□□□□□ -1.32
USP28-201ENST00000003302 HIGD2AQ9BW72 106 aa6.81□□□□□ -1.32
USP28-201ENST00000003302 KLKP1Q107X0 134 aa6.81□□□□□ -1.32
USP28-201ENST00000003302 NKAPP1Q8N9T2 125 aa6.81□□□□□ -1.32
USP28-201ENST00000003302 VPS13DQ5THJ4 4388 aa6.81□□□□□ -1.32
USP28-201ENST00000003302 FAM30AQ9NZY2 134 aa6.81□□□□□ -1.32
USP28-201ENST00000003302 IGKV2-24A0A0C4DH68 120 aa6.8□□□□□ -1.32
USP28-201ENST00000003302 PRLHP81277 87 aa6.8□□□□□ -1.32
USP28-201ENST00000003302 SMIM29Q86T20 159 aa6.8□□□□□ -1.32
USP28-201ENST00000003302 MEGF8Q7Z7M0 2845 aa6.79□□□□□ -1.32
USP28-201ENST00000003302 IGLV1-50A0A075B6I6 118 aa6.79□□□□□ -1.32
USP28-201ENST00000003302 CHTF8P0CG12 524 aa6.79□□□□□ -1.32
USP28-201ENST00000003302 Q6ZRX8 168 aa6.79□□□□□ -1.32
USP28-201ENST00000003302 OCR1Q9BZK8 76 aa6.79□□□□□ -1.32
USP28-201ENST00000003302 LRCOL1A6NCL2 159 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 EPM2AB3EWF7 344 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 TNP2Q05952 138 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 TMEM254Q8TBM7 123 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 K7EQZ3 153 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 DNAH10OSP0CZ25 163 aa6.78□□□□□ -1.32
USP28-201ENST00000003302 IGLV5-48A0A075B6I7 105 aa6.77□□□□□ -1.33
USP28-201ENST00000003302 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.77□□□□□ -1.33
USP28-201ENST00000003302 DSCR10P59022 87 aa6.77□□□□□ -1.33
USP28-201ENST00000003302 H3BNG1 76 aa6.76□□□□□ -1.33
USP28-201ENST00000003302 C1orf137Q5JT78 98 aa6.76□□□□□ -1.33
USP28-201ENST00000003302 LINC00336Q6ZUF6 198 aa6.76□□□□□ -1.33
USP28-201ENST00000003302 A0A096LNI7 61 aa6.75□□□□□ -1.33
USP28-201ENST00000003302 RPL37AP61513 92 aaKnown RBP6.75□□□□□ -1.33
USP28-201ENST00000003302 PRR4Q16378 134 aa6.75□□□□□ -1.33
USP28-201ENST00000003302 PANO1I0J062 215 aa6.74□□□□□ -1.33
USP28-201ENST00000003302 SPRR1AP35321 89 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 238.3 ms