RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ETDCA0A1B0GVM5 59 aa9.32□□□□□ -0.92
SHMT2-226ENST00000556825 A8MTW9 85 aa9.32□□□□□ -0.92
SHMT2-226ENST00000556825 CSMD1Q96PZ7 3565 aa9.31□□□□□ -0.92
SHMT2-226ENST00000556825 IGKV3OR2-268A0A0C4DH90 116 aa9.3□□□□□ -0.92
SHMT2-226ENST00000556825 LOC100131303A0A0U1RQF7 123 aa9.3□□□□□ -0.92
SHMT2-226ENST00000556825 C9orf116Q5BN46 136 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-226ENST00000556825 C11orf71Q6IPW1 123 aa9.3□□□□□ -0.92
SHMT2-226ENST00000556825 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-226ENST00000556825 HRNRQ86YZ3 2850 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-226ENST00000556825 LINC01554Q52M75 96 aa9.29□□□□□ -0.92
SHMT2-226ENST00000556825 Q9BRP9 147 aa9.29□□□□□ -0.92
SHMT2-226ENST00000556825 H3BUA1 57 aa9.28□□□□□ -0.92
SHMT2-226ENST00000556825 LINC00208Q96KT6 92 aa9.28□□□□□ -0.92
SHMT2-226ENST00000556825 MDFIQ99750 246 aa9.28□□□□□ -0.92
SHMT2-226ENST00000556825 ITPR1Q14643 2758 aa9.28□□□□□ -0.92
SHMT2-226ENST00000556825 IGHV4-30-2A0A087WSY4 118 aa9.28□□□□□ -0.92
SHMT2-226ENST00000556825 COX17Q14061 63 aa9.27□□□□□ -0.93
SHMT2-226ENST00000556825 Q8IZM0 81 aa9.27□□□□□ -0.93
SHMT2-226ENST00000556825 ZFYVE26Q68DK2 2539 aa9.27□□□□□ -0.93
SHMT2-226ENST00000556825 DOPEY2Q9Y3R5 2298 aa9.26□□□□□ -0.93
SHMT2-226ENST00000556825 ST20-AS1Q8NBB2 130 aa9.25□□□□□ -0.93
SHMT2-226ENST00000556825 A0A1W2PPR1 153 aa9.25□□□□□ -0.93
SHMT2-226ENST00000556825 HIGD2BQ4VC39 106 aa9.25□□□□□ -0.93
SHMT2-226ENST00000556825 Q8NDZ9 215 aa9.25□□□□□ -0.93
SHMT2-226ENST00000556825 KLK12Q9UKR0 248 aa9.25□□□□□ -0.93
SHMT2-226ENST00000556825 SETXQ7Z333 2677 aaKnown RBP9.25□□□□□ -0.93
SHMT2-226ENST00000556825 IGHV4-30-4P0DP06 118 aa9.24□□□□□ -0.93
SHMT2-226ENST00000556825 SVEP1Q4LDE5 3571 aa9.24□□□□□ -0.93
SHMT2-226ENST00000556825 LINC00313P59037 77 aa9.24□□□□□ -0.93
SHMT2-226ENST00000556825 SPANXA2-OT1Q8N9U9 137 aa9.23□□□□□ -0.93
SHMT2-226ENST00000556825 ASH1LQ9NR48 2969 aaKnown RBP9.23□□□□□ -0.93
SHMT2-226ENST00000556825 IGLV6-57P01721 117 aa9.23□□□□□ -0.93
SHMT2-226ENST00000556825 FLNBO75369 2602 aaKnown RBP9.22□□□□□ -0.93
SHMT2-226ENST00000556825 ZFP36P26651 326 aaKnown RBP9.21□□□□□ -0.93
SHMT2-226ENST00000556825 CCL24O00175 119 aa9.2□□□□□ -0.94
SHMT2-226ENST00000556825 TRGV4A0A0C4DH28 118 aa9.2□□□□□ -0.94
SHMT2-226ENST00000556825 LINC00959A0A1B0GUT2 108 aa9.2□□□□□ -0.94
SHMT2-226ENST00000556825 IGHV4-59P01825 116 aa9.2□□□□□ -0.94
SHMT2-226ENST00000556825 GCN1Q92616 2671 aaKnown RBP9.2□□□□□ -0.94
SHMT2-226ENST00000556825 AKAP6Q13023 2319 aa9.19□□□□□ -0.94
SHMT2-226ENST00000556825 PRAC1Q96KF2 57 aa9.19□□□□□ -0.94
SHMT2-226ENST00000556825 C3orf84H3BNL1 204 aa9.18□□□□□ -0.94
SHMT2-226ENST00000556825 SERTAD4-AS1Q5TG53 156 aa9.17□□□□□ -0.94
SHMT2-226ENST00000556825 MAST4O15021 2626 aa9.17□□□□□ -0.94
SHMT2-226ENST00000556825 IGHV4-28A0A0C4DH34 117 aa9.16□□□□□ -0.94
SHMT2-226ENST00000556825 KCNQ1DNQ9H478 68 aa9.16□□□□□ -0.94
SHMT2-226ENST00000556825 TRGV1A0A0A0MS02 117 aa9.16□□□□□ -0.94
SHMT2-226ENST00000556825 SPTAN1Q13813 2472 aaKnown RBP9.16□□□□□ -0.94
SHMT2-226ENST00000556825 IGSF10Q6WRI0 2623 aa9.15□□□□□ -0.94
SHMT2-226ENST00000556825 IGLV1-40P01703 118 aa9.15□□□□□ -0.94
SHMT2-226ENST00000556825 MP68P56378 58 aa9.15□□□□□ -0.94
SHMT2-226ENST00000556825 KIAA0087Q14695 138 aa9.15□□□□□ -0.94
SHMT2-226ENST00000556825 WFDC10AQ9H1F0 79 aa9.15□□□□□ -0.94
SHMT2-226ENST00000556825 HELZ2Q9BYK8 2649 aaKnown RBP9.14□□□□□ -0.95
SHMT2-226ENST00000556825 A0A1B0GW54 56 aa9.13□□□□□ -0.95
SHMT2-226ENST00000556825 DEFB131AP59861 70 aa9.13□□□□□ -0.95
SHMT2-226ENST00000556825 CASC2Q6XLA1 102 aa9.13□□□□□ -0.95
SHMT2-226ENST00000556825 LINC01558Q9Y6Z2 57 aa9.13□□□□□ -0.95
SHMT2-226ENST00000556825 CFAP46Q8IYW2 2715 aa9.12□□□□□ -0.95
SHMT2-226ENST00000556825 IGHV4-61A0A0C4DH41 118 aa9.12□□□□□ -0.95
SHMT2-226ENST00000556825 PLA2G1BP04054 148 aaKnown RBP9.12□□□□□ -0.95
SHMT2-226ENST00000556825 PLAC8Q9NZF1 115 aa9.12□□□□□ -0.95
SHMT2-226ENST00000556825 INSP01308 110 aa9.12□□□□□ -0.95
SHMT2-226ENST00000556825 CCL19Q99731 98 aa9.11□□□□□ -0.95
SHMT2-226ENST00000556825 NAV2Q8IVL1 2488 aa9.11□□□□□ -0.95
SHMT2-226ENST00000556825 J3QKU1 62 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 FSHBP01225 129 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 DSCR10P59022 87 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 C18orf65Q6ZTR6 163 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 COA5Q86WW8 74 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 DSCR9P59020 149 aa9.09□□□□□ -0.95
SHMT2-226ENST00000556825 DOPEY1Q5JWR5 2465 aa9.08□□□□□ -0.96
SHMT2-226ENST00000556825 CYSRT1A8MQ03 144 aa9.08□□□□□ -0.96
SHMT2-226ENST00000556825 SPINK7P58062 85 aa9.08□□□□□ -0.96
SHMT2-226ENST00000556825 ODF3L2Q3SX64 289 aa9.08□□□□□ -0.96
SHMT2-226ENST00000556825 VPS13CQ709C8 3753 aa9.07□□□□□ -0.96
SHMT2-226ENST00000556825 ASB16-AS1Q495Z4 193 aa9.07□□□□□ -0.96
SHMT2-226ENST00000556825 H3BPC8 53 aa9.07□□□□□ -0.96
SHMT2-226ENST00000556825 K7EQZ3 153 aa9.07□□□□□ -0.96
SHMT2-226ENST00000556825 ADM2Q7Z4H4 148 aa9.07□□□□□ -0.96
SHMT2-226ENST00000556825 FLNCQ14315 2725 aa9.06□□□□□ -0.96
SHMT2-226ENST00000556825 SPAG11BQ08648 103 aa9.06□□□□□ -0.96
SHMT2-226ENST00000556825 USP9XQ93008 2570 aaPredicted RBP9.06□□□□□ -0.96
SHMT2-226ENST00000556825 ABCA2Q9BZC7 2435 aa9.05□□□□□ -0.96
SHMT2-226ENST00000556825 CR1P17927 2039 aa9.05□□□□□ -0.96
SHMT2-226ENST00000556825 SPG11Q96JI7 2443 aa9.04□□□□□ -0.96
SHMT2-226ENST00000556825 MYO18BQ8IUG5 2567 aa9.04□□□□□ -0.96
SHMT2-226ENST00000556825 CNBPP62633 177 aaKnown RBP9.04□□□□□ -0.96
SHMT2-226ENST00000556825 IGLV5-48A0A075B6I7 105 aa9.03□□□□□ -0.96
SHMT2-226ENST00000556825 KPRPQ5T749 579 aaPredicted RBP9.03□□□□□ -0.96
SHMT2-226ENST00000556825 CELSR1Q9NYQ6 3014 aa9.03□□□□□ -0.96
SHMT2-226ENST00000556825 BRD3OSQ6XYD6 125 aa9.03□□□□□ -0.96
SHMT2-226ENST00000556825 Q8NAQ8 132 aa9.03□□□□□ -0.96
SHMT2-226ENST00000556825 LY6EQ16553 131 aa9.02□□□□□ -0.97
SHMT2-226ENST00000556825 LINC00528Q8N1L1 170 aa9.02□□□□□ -0.97
SHMT2-226ENST00000556825 C9orf163Q8N9P6 203 aa9.02□□□□□ -0.97
SHMT2-226ENST00000556825 COL12A1Q99715 3063 aa9.01□□□□□ -0.97
SHMT2-226ENST00000556825 A0A087X002 238 aa9.01□□□□□ -0.97
SHMT2-226ENST00000556825 A0A1W2PNM2 257 aa9□□□□□ -0.97
SHMT2-226ENST00000556825 ZNF462Q96JM2 2506 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms