RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 SHANK2Q9UPX8 1470 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 DCHS2Q6V1P9 2916 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 CDH23Q9H251 3354 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 WDFY3Q8IZQ1 3526 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 PDE4DIPQ5VU43 2346 aa-0.05□□□□□ -2.42
SCFD1-213ENST00000554776 ASPMQ8IZT6 3477 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 CHD7Q9P2D1 2997 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 USP34Q70CQ2 3546 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH12Q6ZR08 3092 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 ADGRG4Q8IZF6 3080 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 PRKDCP78527 4128 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 FAT2Q9NYQ8 4349 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 CNOT1A5YKK6 2376 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 SPHKAPQ2M3C7 1700 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 LOC400499M0QZD8 3231 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 NAP1L6A6NFF2 107 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 FAM223BA6NKX1 122 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 ZZEF1O43149 2961 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 KRTAP6-1Q3LI64 71 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 TMEM263Q8WUH6 116 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 LCN9Q8WX39 176 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 SPRR4Q96PI1 79 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 APC2O95996 2303 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 ATMQ13315 3056 aa-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 SPENQ96T58 3664 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 GOLGA4Q13439 2230 aaKnown RBP-0.06□□□□□ -2.42
SCFD1-213ENST00000554776 CENPFP49454 3210 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 DMXL1Q9Y485 3027 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 LPAP08519 4548 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 POLA1P09884 1462 aaPredicted RBP-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 HTTP42858 3142 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 APOBP04114 4563 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 PRO1854Q9UHT4 67 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 CSPG4Q6UVK1 2322 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 SMG1Q96Q15 3661 aaKnown RBP-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 CFAP47Q6ZTR5 3102 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 VPS13CQ709C8 3753 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 TRIOO75962 3097 aa-0.07□□□□□ -2.42
SCFD1-213ENST00000554776 NBASA2RRP1 2371 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 XIRP2A4UGR9 3374 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH14Q0VDD8 3507 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 SPTBN5Q9NRC6 3674 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 ALMS1Q8TCU4 4167 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 TSC2P49815 1807 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH3Q8TD57 4116 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 REV3LO60673 3130 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 WDR7Q9Y4E6 1490 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 PRUNE2Q8WUY3 3088 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 TRRAPQ9Y4A5 3859 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 RANBP2P49792 3224 aaKnown RBP-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 hADV29S1A0JD25 119 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 C20orf202A1L168 122 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 COX6CP09669 75 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 ASIPP42127 132 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 HSD52Q0P140 79 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 WHAMMP3Q1A5X7 153 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 LELP1Q5T871 98 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 LINC01600Q96MT4 127 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 C12orf57Q99622 126 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 VPS13AQ96RL7 3174 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 MUC3AQ02505 3323 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 PKHD1P08F94 4074 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 SACSQ9NZJ4 4579 aa-0.08□□□□□ -2.42
SCFD1-213ENST00000554776 MUC17Q685J3 4493 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 DMDP11532 3685 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 NCOA3Q9Y6Q9 1424 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 LINC00959A0A1B0GUT2 108 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 A0A1B0GWA3 101 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 KRTAP19-8Q3LI54 63 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 KRTAP19-7Q3SYF9 63 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH10Q8IVF4 4471 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 MAPKBP1O60336 1514 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH9Q9NYC9 4486 aa-0.09□□□□□ -2.42
SCFD1-213ENST00000554776 ADGRL2O95490 1459 aa-0.1□□□□□ -2.42
SCFD1-213ENST00000554776 MAGI1Q96QZ7 1491 aaPredicted RBP-0.1□□□□□ -2.42
SCFD1-213ENST00000554776 PLECQ15149 4684 aaKnown RBP-0.1□□□□□ -2.42
SCFD1-213ENST00000554776 DNAH11Q96DT5 4516 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 PKHD1L1Q86WI1 4243 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 PRM1P04553 51 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 SPRR1BP22528 89 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 SPRR2FQ96RM1 72 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 FXYD6Q9H0Q3 95 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 FAM135AQ9P2D6 1515 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 CHD1O14646 1710 aa-0.1□□□□□ -2.43
SCFD1-213ENST00000554776 TOPAZ1Q8N9V7 1692 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 KNL1Q8NG31 2342 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 DNAH6Q9C0G6 4158 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 K7EQZ3 153 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 COX6B1P14854 86 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 SEC11AP67812 179 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 ANK3Q12955 4377 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 VPS13DQ5THJ4 4388 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 ABCA3Q99758 1704 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 DNAH8Q96JB1 4490 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 C1orf167Q5SNV9 1468 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 NLRP1Q9C000 1473 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 GOLGB1Q14789 3259 aaKnown RBP-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 DIP2CQ9Y2E4 1556 aa-0.11□□□□□ -2.43
SCFD1-213ENST00000554776 DNAH17Q9UFH2 4485 aa-0.11□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms