RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ARHGAP35Q9NRY4 1499 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 CNTLNQ9NXG0 1405 aa0.21□□□□□ -2.38
CPSF3-205ENST00000489629 TMEM2Q9UHN6 1383 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 IQGAP2Q13576 1575 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 DUOX1Q9NRD9 1551 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 ABCC6O95255 1503 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 ABCA10Q8WWZ4 1543 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 LOC100130705A0A1B0GUX0 176 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 COX6B1P14854 86 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 UBE2D1P51668 147 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 SPTSSBQ8NFR3 76 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 LSM10Q969L4 123 aaKnown RBP0.2□□□□□ -2.38
CPSF3-205ENST00000489629 SEC11CQ9BY50 192 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 SYNE1Q8NF91 8797 aaKnown RBP0.2□□□□□ -2.38
CPSF3-205ENST00000489629 MRC1P22897 1456 aa0.2□□□□□ -2.38
CPSF3-205ENST00000489629 SMG6Q86US8 1419 aaKnown RBP0.2□□□□□ -2.38
CPSF3-205ENST00000489629 CACNA1CQ13936 2221 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 INO80Q9ULG1 1556 aaPredicted RBP0.19□□□□□ -2.38
CPSF3-205ENST00000489629 FYCO1Q9BQS8 1478 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 TRGV1A0A0A0MS02 117 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 TRBV7-1A0A0A6YYK4 115 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 RBAKDNA6NC62 111 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 HMGN1P05114 100 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 GUCA1AP43080 201 aaPredicted RBP0.19□□□□□ -2.38
CPSF3-205ENST00000489629 SSBP1Q04837 148 aaKnown RBP0.19□□□□□ -2.38
CPSF3-205ENST00000489629 DEFB121Q5J5C9 76 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 SCIMPQ6UWF3 145 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 KCNRGQ8N5I3 272 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 SPRR2FQ96RM1 72 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 LINC00470Q9BZP3 86 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 TMEM191AQ9H0A3 160 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 PROK2Q9HC23 129 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 RPRMQ9NS64 109 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 ABCA9Q8IUA7 1624 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 HFM1A2PYH4 1435 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 CFAP74Q9C0B2 1584 aa0.19□□□□□ -2.38
CPSF3-205ENST00000489629 NFAT5O94916 1531 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 ARHGAP5Q13017 1502 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 LYNX1G3V0Z9 82 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 K7EP13 123 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 SNCGO76070 127 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 NDUFB6O95139 128 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 CBLN1P23435 193 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 VMO1Q7Z5L0 202 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 SPTSSAQ969W0 71 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 AGPAT4-IT1Q9H0P7 198 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 LINC00846Q9NV44 126 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 V9GYV3 84 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 BCORQ6W2J9 1755 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 TROQ12816 1431 aaPredicted RBP0.18□□□□□ -2.38
CPSF3-205ENST00000489629 MYOM3Q5VTT5 1437 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 UACAQ9BZF9 1416 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 GOLGA4Q13439 2230 aaKnown RBP0.18□□□□□ -2.38
CPSF3-205ENST00000489629 C4BP0C0L5 1744 aa0.18□□□□□ -2.38
CPSF3-205ENST00000489629 ZNF236Q9UL36 1845 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 ZNF518AQ6AHZ1 1483 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 LOC730098B7Z3J9 87 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 EDDM3BP56851 147 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 SELENOWP63302 87 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 RBM3P98179 157 aaKnown RBP0.17□□□□□ -2.38
CPSF3-205ENST00000489629 RPL7L1Q6DKI1 246 aaKnown RBP0.17□□□□□ -2.38
CPSF3-205ENST00000489629 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 PPP1R1CQ8WVI7 109 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 CASKIN1Q8WXD9 1431 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 ARL11Q969Q4 196 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 WFDC6Q9BQY6 131 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 PDCD10Q9BUL8 212 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 SCAPERQ9BY12 1400 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 LINC00312Q9Y6C7 94 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 PLXNB2O15031 1838 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 DOCK2Q92608 1830 aa0.17□□□□□ -2.38
CPSF3-205ENST00000489629 CDC42BPGQ6DT37 1551 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 RRBP1Q9P2E9 1410 aaKnown RBP0.16□□□□□ -2.38
CPSF3-205ENST00000489629 A6NIN4 97 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 F2Z2F3 143 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 G3V318 75 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 M0R2T5 61 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 NMBP08949 121 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 PIPP12273 146 aaPredicted RBP0.16□□□□□ -2.38
CPSF3-205ENST00000489629 ACYP2P14621 99 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 HAMPP81172 84 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 INSL4Q14641 139 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 MEIG1Q5JSS6 88 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 FAM74A4Q5TZK3 123 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 Q6ZRX8 168 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 Q8N8P6 123 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 SMIM11BQ8TCY0 68 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 BPESC1Q9GZL8 116 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 CCDC167Q9P0B6 97 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 PAIP2BQ9ULR5 123 aaKnown RBP0.16□□□□□ -2.38
CPSF3-205ENST00000489629 PIK3C2BO00750 1634 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 PRXQ9BXM0 1461 aa0.16□□□□□ -2.38
CPSF3-205ENST00000489629 PSME4Q14997 1843 aa0.15□□□□□ -2.38
CPSF3-205ENST00000489629 WNK3Q9BYP7 1800 aa0.15□□□□□ -2.38
CPSF3-205ENST00000489629 A0A1B0GUL6 1792 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 TRPM2O94759 1503 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 FAM92AA1XBS5 289 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 HCG22E2RYF7 251 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 CCL8P80075 99 aa0.15□□□□□ -2.39
CPSF3-205ENST00000489629 TSC22D3Q99576 134 aa0.15□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms