RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CACNA1EQ15878 2313 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 DOCK11Q5JSL3 2073 aa2.23□□□□□ -2.05
HMGB1-204ENST00000399489 ATMQ13315 3056 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 CLPSL1A2RUU4 121 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 PRB1P04280 392 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 SSBP1Q04837 148 aaKnown RBP2.22□□□□□ -2.05
HMGB1-204ENST00000399489 SPAG11BQ08648 103 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 SPAG11AQ6PDA7 123 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 C4orf3Q8WVX3 66 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 MYO9AB2RTY4 2548 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 ZFHX3Q15911 3703 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 TEX15Q9BXT5 2789 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 SPTAN1Q13813 2472 aaKnown RBP2.22□□□□□ -2.05
HMGB1-204ENST00000399489 IGKV2-28A0A075B6P5 120 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 IGKV2D-28P01615 120 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 IGHV3-30P01768 117 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 IGHV3-30-5P0DP03 117 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 PRR15LQ9BU68 103 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 SDK1Q7Z5N4 2213 aa2.22□□□□□ -2.05
HMGB1-204ENST00000399489 UBR5O95071 2799 aaPredicted RBP2.21□□□□□ -2.05
HMGB1-204ENST00000399489 MGAQ8IWI9 3026 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 ABCA12Q86UK0 2595 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 A0A0J9YY99 117 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 Q86TA4 180 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 AMELXQ99217 191 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 RP1P56715 2156 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 SPENQ96T58 3664 aaKnown RBP2.21□□□□□ -2.06
HMGB1-204ENST00000399489 PIEZO2Q9H5I5 2752 aa2.21□□□□□ -2.06
HMGB1-204ENST00000399489 PTPRQQ9UMZ3 2332 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 IGKV3-7A0A075B6H7 116 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 SPACA4Q8TDM5 124 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 LAMA4Q16363 1823 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 NINQ8N4C6 2090 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 URB1O60287 2271 aaKnown RBP2.2□□□□□ -2.06
HMGB1-204ENST00000399489 J3QKU1 62 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 DNAL4O96015 105 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 S100A3P33764 101 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 FAM74A4Q5TZK3 123 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 DEFB124Q8NES8 71 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 PPP1R1CQ8WVI7 109 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 SNURFQ9Y675 71 aa2.2□□□□□ -2.06
HMGB1-204ENST00000399489 DOPEY1Q5JWR5 2465 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 SHANK1Q9Y566 2161 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 BOD1L1Q8NFC6 3051 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 MPDZO75970 2070 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 MYOFQ9NZM1 2061 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 TRBV6-5A0A0K0K1A5 114 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 A0A1W2PNN7 141 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 HCRTO43612 131 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 IGLV6-57P01721 117 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 PRH1P02810 166 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 LINC00315P59091 139 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 PATE1Q8WXA2 126 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 COL6A6A6NMZ7 2263 aa2.19□□□□□ -2.06
HMGB1-204ENST00000399489 ASCC3Q8N3C0 2202 aaKnown RBP2.18□□□□□ -2.06
HMGB1-204ENST00000399489 TRBV7-4A0A0J9YYF1 115 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 LINC01549A6NIU2 74 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 F8VRH5 84 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 IGKV1-17P01599 117 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 NCBP2-AS2Q69YL0 99 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 FDCSPQ8NFU4 85 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 COX7B2Q8TF08 81 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 R4GMQ9 66 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 COL4A2P08572 1712 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 FBN2P35556 2912 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 LRRK2Q5S007 2527 aa2.18□□□□□ -2.06
HMGB1-204ENST00000399489 C2CD3Q4AC94 2353 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 M0R3E3 92 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 PRR9Q5T870 116 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 NMES1Q9C002 83 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 CREBBPQ92793 2442 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 CSMD2Q7Z408 3487 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 PPYP01298 95 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 PRB2P02812 416 aaPredicted RBP2.17□□□□□ -2.06
HMGB1-204ENST00000399489 CCL3L1P16619 93 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 GDF5OSQ5U4N7 250 aa2.17□□□□□ -2.06
HMGB1-204ENST00000399489 ZGRF1Q86YA3 2104 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 USP9YO00507 2555 aaPredicted RBP2.16□□□□□ -2.06
HMGB1-204ENST00000399489 A0A087WVE0 104 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 PDE6GP18545 87 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 ZNF563Q8TA94 476 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 LINC01558Q9Y6Z2 57 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 DOPEY2Q9Y3R5 2298 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 BAZ2BQ9UIF8 2168 aaKnown RBP2.16□□□□□ -2.06
HMGB1-204ENST00000399489 ITPR3Q14573 2671 aa2.16□□□□□ -2.06
HMGB1-204ENST00000399489 AHCTF1Q8WYP5 2266 aa2.15□□□□□ -2.06
HMGB1-204ENST00000399489 SPAG17Q6Q759 2223 aa2.15□□□□□ -2.06
HMGB1-204ENST00000399489 TRBV6-4A0A1B0GX49 114 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 JMJD7-PLA2G4BH0Y9G9 81 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 IGLV3-1P01715 115 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 CCL18P55774 89 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 SMIM4Q8WVI0 70 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 COL5A1P20908 1838 aaPredicted RBP2.15□□□□□ -2.07
HMGB1-204ENST00000399489 TSC2P49815 1807 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 FLNCQ14315 2725 aa2.15□□□□□ -2.07
HMGB1-204ENST00000399489 HEATR1Q9H583 2144 aaKnown RBP2.15□□□□□ -2.07
HMGB1-204ENST00000399489 A0A1B0GUT8 65 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 IFI6P09912 130 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 TTTY12Q9BZ98 90 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 KNTC1P50748 2209 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms