RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 Q6ZQY7 126 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 CSMD1Q96PZ7 3565 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 TRGV2A0A075B6R0 118 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 IGLV1-51P01701 117 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 COX7BP24311 80 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 ROS1P08922 2347 aa4.45□□□□□ -1.7
ZNF540-201ENST00000316433 PLA2G2AP14555 144 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 KRTAP1-3Q8IUG1 177 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 HTN1P15515 57 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 TTC28Q96AY4 2481 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 LINC00208Q96KT6 92 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 DMXL2Q8TDJ6 3036 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 PRAC1Q96KF2 57 aa4.44□□□□□ -1.7
ZNF540-201ENST00000316433 DOPEY2Q9Y3R5 2298 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 A0A0J9YWU9 116 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 ETDCA0A1B0GVM5 59 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 IGHV4-30-4P0DP06 118 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 Q9BRP9 147 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 ATMQ13315 3056 aa4.43□□□□□ -1.7
ZNF540-201ENST00000316433 PKDREJQ9NTG1 2253 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 ADGRG4Q8IZF6 3080 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 A0A0A0MQY5 61 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 SLURP1P55000 103 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 KIAA0087Q14695 138 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 MP68P56378 58 aa4.42□□□□□ -1.7
ZNF540-201ENST00000316433 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.42□□□□□ -1.7
ZNF540-201ENST00000316433 ANKRD11Q6UB99 2663 aaPredicted RBP4.42□□□□□ -1.7
ZNF540-201ENST00000316433 MAP1BP46821 2468 aaKnown RBP4.41□□□□□ -1.7
ZNF540-201ENST00000316433 LINC00959A0A1B0GUT2 108 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 H3BNG1 76 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 ST20-AS1Q8NBB2 130 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 PCNX1Q96RV3 2341 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 IGKV3OR2-268A0A0C4DH90 116 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 PRM2P04554 102 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 DEFB113Q30KQ7 82 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 APC2O95996 2303 aa4.41□□□□□ -1.7
ZNF540-201ENST00000316433 C3orf84H3BNL1 204 aa4.4□□□□□ -1.7
ZNF540-201ENST00000316433 IGLV6-57P01721 117 aa4.4□□□□□ -1.7
ZNF540-201ENST00000316433 SPTBN1Q01082 2364 aaKnown RBP4.4□□□□□ -1.7
ZNF540-201ENST00000316433 C10orf99Q6UWK7 81 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 KLK12Q9UKR0 248 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 HIGD2BQ4VC39 106 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 CASC2Q6XLA1 102 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 C18orf65Q6ZTR6 163 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 SPANXA2-OT1Q8N9U9 137 aa4.4□□□□□ -1.71
ZNF540-201ENST00000316433 TACC2O95359 2948 aa4.39□□□□□ -1.71
ZNF540-201ENST00000316433 GVINP1Q7Z2Y8 2422 aa4.39□□□□□ -1.71
ZNF540-201ENST00000316433 ZFHX2Q9C0A1 2572 aaPredicted RBP4.39□□□□□ -1.71
ZNF540-201ENST00000316433 PRR34Q9NV39 138 aa4.39□□□□□ -1.71
ZNF540-201ENST00000316433 DCHS2Q6V1P9 2916 aa4.39□□□□□ -1.71
ZNF540-201ENST00000316433 SPTBN2O15020 2390 aa4.38□□□□□ -1.71
ZNF540-201ENST00000316433 LRBAP50851 2863 aa4.38□□□□□ -1.71
ZNF540-201ENST00000316433 TRGV1A0A0A0MS02 117 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 PLA2G1BP04054 148 aaKnown RBP4.37□□□□□ -1.71
ZNF540-201ENST00000316433 ADM2Q7Z4H4 148 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 Q8NDZ9 215 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 WFDC10AQ9H1F0 79 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 RIF1Q5UIP0 2472 aaKnown RBP4.37□□□□□ -1.71
ZNF540-201ENST00000316433 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.37□□□□□ -1.71
ZNF540-201ENST00000316433 PLA2G2DQ9UNK4 145 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 AKAP9Q99996 3911 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 ACACAQ13085 2346 aa4.37□□□□□ -1.71
ZNF540-201ENST00000316433 TPRP12270 2363 aaKnown RBP4.37□□□□□ -1.71
ZNF540-201ENST00000316433 PRO0255Q9UI72 69 aa4.36□□□□□ -1.71
ZNF540-201ENST00000316433 KCNQ1DNQ9H478 68 aa4.36□□□□□ -1.71
ZNF540-201ENST00000316433 TRGV4A0A0C4DH28 118 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 DNAJC9-AS1A6NH13 148 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 LINC01558Q9Y6Z2 57 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 SPINK7P58062 85 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 KRTAP1-1Q07627 177 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 COA5Q86WW8 74 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 PLAC8Q9NZF1 115 aa4.35□□□□□ -1.71
ZNF540-201ENST00000316433 RELNP78509 3460 aa4.34□□□□□ -1.71
ZNF540-201ENST00000316433 IGLV5-37A0A075B6J1 123 aa4.34□□□□□ -1.71
ZNF540-201ENST00000316433 H0Y9J4 135 aa4.34□□□□□ -1.72
ZNF540-201ENST00000316433 SPAG11BQ08648 103 aa4.34□□□□□ -1.72
ZNF540-201ENST00000316433 ASB16-AS1Q495Z4 193 aa4.34□□□□□ -1.72
ZNF540-201ENST00000316433 Q8NAQ8 132 aa4.34□□□□□ -1.72
ZNF540-201ENST00000316433 NOP10Q9NPE3 64 aaKnown RBP4.33□□□□□ -1.72
ZNF540-201ENST00000316433 ZNF706Q9Y5V0 76 aaPredicted RBP4.33□□□□□ -1.72
ZNF540-201ENST00000316433 J3QL48 77 aa4.33□□□□□ -1.72
ZNF540-201ENST00000316433 LELP1Q5T871 98 aa4.33□□□□□ -1.72
ZNF540-201ENST00000316433 RETNLBQ9BQ08 111 aa4.33□□□□□ -1.72
ZNF540-201ENST00000316433 CEP295Q9C0D2 2601 aa4.33□□□□□ -1.72
ZNF540-201ENST00000316433 GYPEP15421 78 aa4.32□□□□□ -1.72
ZNF540-201ENST00000316433 TLX1NBP0CAT3 122 aa4.32□□□□□ -1.72
ZNF540-201ENST00000316433 LINC00476Q8WZB0 136 aa4.32□□□□□ -1.72
ZNF540-201ENST00000316433 TLN1Q9Y490 2541 aaKnown RBP4.32□□□□□ -1.72
ZNF540-201ENST00000316433 K7EQZ3 153 aa4.32□□□□□ -1.72
ZNF540-201ENST00000316433 DSCR10P59022 87 aa4.31□□□□□ -1.72
ZNF540-201ENST00000316433 TNP2Q05952 138 aa4.31□□□□□ -1.72
ZNF540-201ENST00000316433 SPAG11AQ6PDA7 123 aa4.31□□□□□ -1.72
ZNF540-201ENST00000316433 H3BPC8 53 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 CNBPP62633 177 aaKnown RBP4.3□□□□□ -1.72
ZNF540-201ENST00000316433 DEFB136Q30KP8 78 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 KRTAP26-1Q6PEX3 210 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 MUC6Q6W4X9 2439 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 SVEP1Q4LDE5 3571 aa4.3□□□□□ -1.72
ZNF540-201ENST00000316433 ANK3Q12955 4377 aaKnown RBP4.3□□□□□ -1.72
ZNF540-201ENST00000316433 PTPRZ1P23471 2315 aaPredicted RBP4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 116.3 ms