RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 LRP1BQ9NZR2 4599 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 IQSEC2Q5JU85 1478 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 hADV29S1A0JD25 119 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 H7BZZ5 65 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 NDUFC1O43677 76 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 TRAPPC2P0DI81 140 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 TRAPPC2BP0DI82 140 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 UBA52P62987 128 aaKnown RBP-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 LCN9Q8WX39 176 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 USMG5Q96IX5 58 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 C12orf57Q99622 126 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 FAT2Q9NYQ8 4349 aa-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 GOLGA4Q13439 2230 aaKnown RBP-0.26□□□□□ -2.45
VPS13A-213ENST00000539950 KIAA1551Q9HCM1 1747 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 PDZD2O15018 2839 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 SRRM2Q9UQ35 2752 aaKnown RBP-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 TARBP1Q13395 1621 aaKnown RBP-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 SETXQ7Z333 2677 aaKnown RBP-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 CCDC141Q6ZP82 1450 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 NLRP1Q9C000 1473 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 MLH3Q9UHC1 1453 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 HECTD4Q9Y4D8 3996 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 TRBV25-1A0A075B6N4 114 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 CRYM-AS1A6NIL9 109 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 MPC2O95563 127 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 COX8AP10176 69 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 S100A1P23297 94 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 GTF2H5Q6ZYL4 71 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 DSTQ03001 7570 aaKnown RBP-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 SHPRHQ149N8 1683 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 CSPG4Q6UVK1 2322 aa-0.27□□□□□ -2.45
VPS13A-213ENST00000539950 ABCC2Q92887 1545 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 TEX14Q8IWB6 1497 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 CHD8Q9HCK8 2581 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 SPTA1P02549 2419 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 C20orf202A1L168 122 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 M0R2T5 61 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 SPRR2AP35326 72 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 SNCAP37840 140 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 SEC11AP67812 179 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 DEFB105AQ8NG35 78 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 C14orf144Q96I85 54 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 CACFD1Q9UGQ2 172 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 PAPPA2Q9BXP8 1791 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 LRRC37AA6NMS7 1700 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 ABCA3Q99758 1704 aa-0.28□□□□□ -2.45
VPS13A-213ENST00000539950 TCHHQ07283 1943 aa-0.28□□□□□ -2.46
VPS13A-213ENST00000539950 APC2O95996 2303 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 MARF1Q9Y4F3 1742 aaKnown RBP-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 TRAV30A0A087WSZ9 112 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 A0A087WVE0 104 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 A0A0G2JND7 137 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 H0Y9P7 68 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 S100PP25815 95 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 SFTA2Q6UW10 78 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 SAMD9Q5K651 1589 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 EPRSP07814 1512 aaKnown RBP-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 FYCO1Q9BQS8 1478 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 NRXN1Q9ULB1 1477 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 RAPGEF2Q9Y4G8 1499 aa-0.29□□□□□ -2.46
VPS13A-213ENST00000539950 FLNBO75369 2602 aaKnown RBP-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 ANKRD36BQ8N2N9 1353 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 MUC12Q9UKN1 5478 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 A0A1B0GU69 56 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 TMEM218A2RU14 115 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 C7orf77A4D0Y5 90 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 H3BQF6 201 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 PMCHL1Q16048 86 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 KRTAP19-7Q3SYF9 63 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 C6orf201Q7Z4U5 140 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 FDCSPQ8NFU4 85 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 TRGV9Q99603 122 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 WNK1Q9H4A3 2382 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 CUX1P39880 1505 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 BSNQ9UPA5 3926 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 MAP1AP78559 2803 aaPredicted RBP-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 FANCAO15360 1455 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 FMN2Q9NZ56 1722 aa-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 MAP1BP46821 2468 aaKnown RBP-0.3□□□□□ -2.46
VPS13A-213ENST00000539950 TRBV7-7A0A0K0K1E9 115 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 SYS1-DBNDD2H3BUS1 97 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 ATOX1O00244 68 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 MT-ATP8P03928 68 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 HMGN3Q15651 99 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 KLK9Q2XQG4 91 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 PSMG4Q5JS54 123 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 ACBD7Q8N6N7 88 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 SERP2Q8N6R1 65 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 TCEAL7Q9BRU2 100 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 ACANP16112 2415 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 VPS8Q8N3P4 1428 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 CNTLNQ9NXG0 1405 aa-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 URB1O60287 2271 aaKnown RBP-0.31□□□□□ -2.46
VPS13A-213ENST00000539950 DNAJC13O75165 2243 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 PDCD11Q14690 1871 aaKnown RBP-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 CPSF4LA6NMK7 179 aaKnown RBP-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 LOC730098B7Z3J9 87 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 GNGT2O14610 69 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 ARMS2P0C7Q2 107 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 KRTAP6-2Q3LI66 62 aa-0.32□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms