RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 ORMDL1Q9P0S3 153 aa4.69□□□□□ -1.66
USP28-202ENST00000535607 CDKN2A-AS1Q9UH64 79 aa4.69□□□□□ -1.66
USP28-202ENST00000535607 ABCA1O95477 2261 aa4.69□□□□□ -1.66
USP28-202ENST00000535607 ZNF469Q96JG9 3925 aaPredicted RBP4.68□□□□□ -1.66
USP28-202ENST00000535607 IGHV3OR16-10A0A075B7F0 116 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 TRBV10-1A0A0K0K1A3 114 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 UBE2L6O14933 153 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 IGHV3-11P01762 117 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 KRTAP1-1Q07627 177 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 SPINK13Q1W4C9 94 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 DEFB104AQ8WTQ1 72 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 OBSCN-AS1Q96MR7 158 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 UBL5Q9BZL1 73 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 SND1-IT1Q9HBX3 110 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 SERP1Q9Y6X1 66 aa4.68□□□□□ -1.66
USP28-202ENST00000535607 NOTCH2Q04721 2471 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 MYO9AB2RTY4 2548 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.67□□□□□ -1.66
USP28-202ENST00000535607 IGKV2-29A2NJV5 120 aaPredicted RBP4.67□□□□□ -1.66
USP28-202ENST00000535607 F5H768 121 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 TMEM256-PLSCR3K7ERE1 68 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 NDUFC1O43677 76 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 TRBV12-3P01733 135 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 CCKP06307 115 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 IGHV4-38-2P0DP08 117 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 MAPK1IP1LQ8NDC0 245 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 ZNF625Q96I27 306 aaPredicted RBP4.67□□□□□ -1.66
USP28-202ENST00000535607 TEX15Q9BXT5 2789 aa4.67□□□□□ -1.66
USP28-202ENST00000535607 TRAV12-2A0A075B6T6 113 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 FAM236DA0A1B0GTK5 79 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 A6NDX4 124 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 IBA57-AS1B1ANH7 110 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 SMIM1B2RUZ4 78 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 RS1O15537 224 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 IGKV3-20P01619 116 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 FAM236CP0DP71 79 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 PSMB8P28062 276 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 DEFB1P60022 68 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 LINC00242Q5T6M2 205 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 TMEM86BQ8N661 226 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 UPK3BQ9BT76 320 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 TMEM243Q9BU79 118 aa4.66□□□□□ -1.66
USP28-202ENST00000535607 SETXQ7Z333 2677 aaKnown RBP4.66□□□□□ -1.66
USP28-202ENST00000535607 WNK2Q9Y3S1 2297 aa4.65□□□□□ -1.66
USP28-202ENST00000535607 IGKV3D-7A0A0C4DH55 119 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 KNCNA6PVL3 124 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 INSP01308 110 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 PDE6GP18545 87 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 LINC00158P58513 81 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 RNASE13Q5GAN3 156 aaKnown RBP4.65□□□□□ -1.67
USP28-202ENST00000535607 BRD3OSQ6XYD6 125 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 COX7B2Q8TF08 81 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 FAM104AQ969W3 186 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 C14orf132Q9NPU4 83 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 PRO0628Q9UI54 55 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 SVEP1Q4LDE5 3571 aa4.65□□□□□ -1.67
USP28-202ENST00000535607 TRAV7A0A075B6U4 112 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 SMIM26A0A096LP01 95 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 IGHV3-73A0A0B4J1V6 119 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 A8MTW9 85 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 SMIM11BQ8TCY0 68 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 Q9HAA7 133 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 LINC00846Q9NV44 126 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 MXRA5Q9NR99 2828 aa4.64□□□□□ -1.67
USP28-202ENST00000535607 NSD1Q96L73 2696 aaPredicted RBP4.63□□□□□ -1.67
USP28-202ENST00000535607 IGHV3OR16-12A0A075B7B8 117 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 A0A0U1RRA0 63 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 H3BUX3 64 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 LECT2O14960 151 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 HTN1P15515 57 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 Q8N2B8 174 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 MIR7-3HGQ8N6C7 128 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 KIR2DL5BQ8NHK3 375 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 FAM218AQ96MZ4 157 aa4.63□□□□□ -1.67
USP28-202ENST00000535607 CMC4P56277 68 aaPredicted RBP4.62□□□□□ -1.67
USP28-202ENST00000535607 COX6A2Q02221 97 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 LY6EQ16553 131 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 DEFB112Q30KQ8 113 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 SOSTDC1Q6X4U4 206 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 LINC01561Q8N1V8 128 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 DSCR8Q96T75 97 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 CDC42SE2Q9NRR3 84 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 MED13LQ71F56 2210 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 HIVEP1P15822 2718 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 HIVEP2P31629 2446 aa4.62□□□□□ -1.67
USP28-202ENST00000535607 ANK3Q12955 4377 aaKnown RBP4.62□□□□□ -1.67
USP28-202ENST00000535607 TLN2Q9Y4G6 2542 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 IGHV3-38A0A0C4DH36 116 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 K7EQD1 137 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 LY6G6DO95868 133 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 PFN2P35080 140 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 XCL1P47992 114 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 HILS1P60008 231 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 LYPD5Q6UWN5 251 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 HRCT1Q6UXD1 115 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 LINC00167Q96N53 147 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 XCL2Q9UBD3 114 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 C22orf24Q9Y442 160 aa4.61□□□□□ -1.67
USP28-202ENST00000535607 CSPG4Q6UVK1 2322 aa4.6□□□□□ -1.67
USP28-202ENST00000535607 A0A087WYN8 130 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms