RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 RBX1P62877 108 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 LINC00526Q96FQ7 95 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 KPRPQ5T749 579 aaPredicted RBP5.73□□□□□ -1.49
VPS13D-211ENST00000543710 C2orf48Q96LS8 159 aa5.73□□□□□ -1.49
VPS13D-211ENST00000543710 H0Y9J4 135 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 COL4A2P08572 1712 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 IGIPA6NJ69 53 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 LINC00269Q8N2A0 174 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 HIVEP3Q5T1R4 2406 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 ROS1P08922 2347 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 CSPG4Q6UVK1 2322 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 RNASE3P12724 160 aaKnown RBP5.72□□□□□ -1.49
VPS13D-211ENST00000543710 SYCNQ0VAF6 134 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 FAM19A3Q7Z5A8 133 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 ARHGEF17Q96PE2 2063 aaPredicted RBP5.72□□□□□ -1.49
VPS13D-211ENST00000543710 LINC00959A0A1B0GUT2 108 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 AMELXQ99217 191 aa5.72□□□□□ -1.49
VPS13D-211ENST00000543710 MPDZO75970 2070 aa5.71□□□□□ -1.49
VPS13D-211ENST00000543710 TEX49A0A1B0GTD5 131 aa5.71□□□□□ -1.49
VPS13D-211ENST00000543710 EGFEM1PQ0D2K5 195 aa5.71□□□□□ -1.49
VPS13D-211ENST00000543710 ARFGEF3Q5TH69 2177 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 CPAMD8Q8IZJ3 1885 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 WNK2Q9Y3S1 2297 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 CXCL6P80162 114 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 MSMPQ1L6U9 139 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 ENHOQ6UWT2 76 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 CASC2Q6XLA1 102 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 BEAN1Q3B7T3 259 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 C6orf223Q8N319 242 aa5.71□□□□□ -1.5
VPS13D-211ENST00000543710 PRRC2AP48634 2157 aaKnown RBP5.7□□□□□ -1.5
VPS13D-211ENST00000543710 FAM19A1Q7Z5A9 133 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 MAPKAPK5-AS1Q8N8E1 139 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 DCANP1Q8TF63 244 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 CDKN2A-AS1Q9UH64 79 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 DOCK9Q9BZ29 2069 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 RPL37AP8A6NKH3 93 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 Q6ZTI0 123 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 CDC42SE2Q9NRR3 84 aa5.7□□□□□ -1.5
VPS13D-211ENST00000543710 SDIM1Q6ZPB5 146 aa5.69□□□□□ -1.5
VPS13D-211ENST00000543710 YLPM1P49750 1951 aaKnown RBP5.69□□□□□ -1.5
VPS13D-211ENST00000543710 TRBV7-7A0A0K0K1E9 115 aa5.69□□□□□ -1.5
VPS13D-211ENST00000543710 ZNF73O43830 326 aaPredicted RBP5.69□□□□□ -1.5
VPS13D-211ENST00000543710 C10orf25Q5T742 122 aa5.69□□□□□ -1.5
VPS13D-211ENST00000543710 IGLV10-54A0A075B6I4 117 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 A0A1B0GUV1 79 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 H3BPC8 53 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 IGKV4-1P06312 121 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 C20orf197Q8N268 126 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 Q8N814 137 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 SMIM11BQ8TCY0 68 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 FREM3P0C091 2139 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 FHL3Q13643 280 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 FREM1Q5H8C1 2179 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 PMAIP1Q13794 54 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 C1orf158Q8N1D5 194 aa5.68□□□□□ -1.5
VPS13D-211ENST00000543710 CHD3Q12873 2000 aaKnown RBP5.68□□□□□ -1.5
VPS13D-211ENST00000543710 ADAMTS20P59510 1910 aa5.67□□□□□ -1.5
VPS13D-211ENST00000543710 ANKHD1Q8IWZ3 2542 aaKnown RBP5.67□□□□□ -1.5
VPS13D-211ENST00000543710 PROK1P58294 105 aa5.67□□□□□ -1.5
VPS13D-211ENST00000543710 MTORP42345 2549 aa5.66□□□□□ -1.5
VPS13D-211ENST00000543710 KLK9Q2XQG4 91 aa5.66□□□□□ -1.5
VPS13D-211ENST00000543710 hDV103S1A0JD37 113 aa5.65□□□□□ -1.5
VPS13D-211ENST00000543710 CEP192Q8TEP8 1941 aa5.65□□□□□ -1.5
VPS13D-211ENST00000543710 EP400Q96L91 3159 aa5.65□□□□□ -1.5
VPS13D-211ENST00000543710 PTPRSQ13332 1948 aa5.65□□□□□ -1.5
VPS13D-211ENST00000543710 KRTAP21-3Q3LHN1 58 aa5.65□□□□□ -1.5
VPS13D-211ENST00000543710 IGF2RP11717 2491 aa5.65□□□□□ -1.51
VPS13D-211ENST00000543710 Q8N2B8 174 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 ABCA12Q86UK0 2595 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 DSCAMO60469 2012 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 XGP55808 180 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 DOPEY1Q5JWR5 2465 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 H3BNG1 76 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 TTTY13Q9BZ97 58 aa5.64□□□□□ -1.51
VPS13D-211ENST00000543710 C6orf99Q4VX62 202 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 NOTCH4Q99466 2003 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 EPM2AB3EWF7 344 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 EML6Q6ZMW3 1958 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 MALRD1Q5VYJ5 2156 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 IGLV1-51P01701 117 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 FAM19A4Q96LR4 140 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 SMIM1B2RUZ4 78 aa5.63□□□□□ -1.51
VPS13D-211ENST00000543710 RPS28P62857 69 aaKnown RBP5.62□□□□□ -1.51
VPS13D-211ENST00000543710 LIMD2Q9BT23 127 aa5.62□□□□□ -1.51
VPS13D-211ENST00000543710 PRR9Q5T870 116 aa5.62□□□□□ -1.51
VPS13D-211ENST00000543710 NTM-AS1Q6ZSK4 140 aa5.62□□□□□ -1.51
VPS13D-211ENST00000543710 Q8N9L7 120 aa5.62□□□□□ -1.51
VPS13D-211ENST00000543710 TP53AIP1Q9HCN2 124 aa5.62□□□□□ -1.51
VPS13D-211ENST00000543710 WFDC10AQ9H1F0 79 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 PLAC8L1A1L4L8 177 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 HIGD2AQ9BW72 106 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 Q6ZSN1 163 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 URB1-AS1Q96HZ7 61 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 PHF3Q92576 2039 aaKnown RBP5.61□□□□□ -1.51
VPS13D-211ENST00000543710 JMJD1CQ15652 2540 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 PCDH15Q96QU1 1955 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 COX6B2Q6YFQ2 88 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 C11orf21Q9P2W6 132 aa5.61□□□□□ -1.51
VPS13D-211ENST00000543710 NOTCH3Q9UM47 2321 aa5.6□□□□□ -1.51
VPS13D-211ENST00000543710 LINC00242Q5T6M2 205 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms