RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 LINC00612Q8N6U2 182 aa3.7□□□□□ -1.82
CD44-231ENST00000531110 C20orf203Q8NBC4 194 aa3.7□□□□□ -1.82
CD44-231ENST00000531110 ARHGAP32A7KAX9 2087 aa3.7□□□□□ -1.82
CD44-231ENST00000531110 IGHV3-72A0A0B4J1Y9 119 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 TRAV21A0A0B4J279 112 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 CGB3P0DN86 165 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 CGB7P0DN87 165 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 KRTAP10-3P60369 221 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 FAM104AQ969W3 186 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 PRR34Q9NV39 138 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 ZNF706Q9Y5V0 76 aaPredicted RBP3.69□□□□□ -1.82
CD44-231ENST00000531110 S4R3C0 116 aa3.69□□□□□ -1.82
CD44-231ENST00000531110 DSCAML1Q8TD84 2053 aa3.68□□□□□ -1.82
CD44-231ENST00000531110 TRBV10-1A0A0K0K1A3 114 aa3.68□□□□□ -1.82
CD44-231ENST00000531110 IGLV1-51P01701 117 aa3.68□□□□□ -1.82
CD44-231ENST00000531110 BSPH1Q075Z2 132 aa3.68□□□□□ -1.82
CD44-231ENST00000531110 LINC00208Q96KT6 92 aa3.68□□□□□ -1.82
CD44-231ENST00000531110 IGHV3-73A0A0B4J1V6 119 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 IGKV2-29A2NJV5 120 aaPredicted RBP3.67□□□□□ -1.82
CD44-231ENST00000531110 RTL8CO15255 209 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 IGHV3-43DP0DP04 118 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 WT1-ASQ06250 92 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 Q8N814 137 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 B9D2Q9BPU9 175 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 CACNA1DQ01668 2161 aa3.67□□□□□ -1.82
CD44-231ENST00000531110 IGHV3-49A0A0A0MS15 119 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 IGHV3-35A0A0C4DH35 117 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 NCR3O14931 201 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 MUC7Q8TAX7 377 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 RNF5Q99942 180 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 PRR15LQ9BU68 103 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 HIGD2AQ9BW72 106 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 KCNQ1DNQ9H478 68 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 Q9Y3F1 56 aa3.66□□□□□ -1.82
CD44-231ENST00000531110 PLXNB1O43157 2135 aa3.65□□□□□ -1.82
CD44-231ENST00000531110 IGHV1OR15-1A0A075B7D0 117 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 LECT2O14960 151 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 CCL5P13501 91 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 LINC00315P59091 139 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 HAMPP81172 84 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 CCL14Q16627 93 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 C9orf129Q5T035 196 aaKnown RBP3.65□□□□□ -1.83
CD44-231ENST00000531110 Q6ZS52 159 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 NTM-AS1Q6ZSK4 140 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 PI4KAP42356 2102 aa3.65□□□□□ -1.83
CD44-231ENST00000531110 A0A087WSZ3 146 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 KRTAP9-6A8MVA2 160 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 ROMO1P60602 79 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 NNATQ16517 81 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 KPRPQ5T749 579 aaPredicted RBP3.64□□□□□ -1.83
CD44-231ENST00000531110 WFDC9Q8NEX5 89 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 SMIM11BQ8TCY0 68 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 ZNF407Q9C0G0 2248 aa3.64□□□□□ -1.83
CD44-231ENST00000531110 DIDO1Q9BTC0 2240 aaKnown RBP3.63□□□□□ -1.83
CD44-231ENST00000531110 IGHV3OR16-12A0A075B7B8 117 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 IGHV3-43A0A0B4J1X8 118 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 ETDCA0A1B0GVM5 59 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 PINLYPA6NC86 204 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 RPL37AP8A6NKH3 93 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 I3L2K1 104 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 IGKV1-17P01599 117 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 STATHP02808 62 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 IGKV4-1P06312 121 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 MSMBP08118 114 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 LYZP61626 148 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 KLK9Q2XQG4 91 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 COX7B2Q8TF08 81 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 MUC4Q99102 2169 aa3.63□□□□□ -1.83
CD44-231ENST00000531110 PDE4DIPQ5VU43 2346 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 COL27A1Q8IZC6 1860 aaPredicted RBP3.62□□□□□ -1.83
CD44-231ENST00000531110 MED13Q9UHV7 2174 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 IGHV3-48P01763 117 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 RPL39P5Q59GN2 51 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 REG3GQ6UW15 175 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 RPL39LQ96EH5 51 aaKnown RBP3.62□□□□□ -1.83
CD44-231ENST00000531110 DEFB126Q9BYW3 111 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 ZGRF1Q86YA3 2104 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 MALRD1Q5VYJ5 2156 aa3.62□□□□□ -1.83
CD44-231ENST00000531110 IGKV2-28A0A075B6P5 120 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 TRGV2A0A075B6R0 118 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 TRBV6-4A0A1B0GX49 114 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 A8MU10 97 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 IGKV2D-28P01615 120 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 IGHV3-53P01767 116 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 ZFAND2AQ8N6M9 145 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 SND1-IT1Q9HBX3 110 aa3.61□□□□□ -1.83
CD44-231ENST00000531110 ZFHX3Q15911 3703 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 IGHV3OR16-8A0A075B7F1 116 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 IGKV2-40A0A087WW87 121 aaPredicted RBP3.6□□□□□ -1.83
CD44-231ENST00000531110 IGKV2D-40P01614 121 aaPredicted RBP3.6□□□□□ -1.83
CD44-231ENST00000531110 CCL3P10147 92 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 COX7BP24311 80 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 RPL39P62891 51 aaKnown RBP3.6□□□□□ -1.83
CD44-231ENST00000531110 NPBQ8NG41 125 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 TYMSOSQ8TAI1 123 aa3.6□□□□□ -1.83
CD44-231ENST00000531110 TNCP24821 2201 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 IGHV7-81A0A0B4J1V7 117 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 IGHV1-3A0A0C4DH29 117 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 M0QY20 66 aa3.59□□□□□ -1.83
CD44-231ENST00000531110 NDUFA4O00483 81 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms