RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 A8MTW9 85 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 PFN2P35080 140 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 LINC00167Q96N53 147 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 RHPN1-AS1Q9BWJ2 59 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 Q9H8V8 135 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 CDKN2A-AS1Q9UH64 79 aa4.82□□□□□ -1.64
USP28-207ENST00000538475 DOPEY2Q9Y3R5 2298 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 IGHV3-49A0A0A0MS15 119 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.81□□□□□ -1.64
USP28-207ENST00000538475 KNCNA6PVL3 124 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 IGHV3-53P01767 116 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 KLKP1Q107X0 134 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 C4orf26Q17RF5 130 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 DGAT2L7PQ6IED9 249 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 Q8N2B8 174 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 DSCR8Q96T75 97 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 TMEM243Q9BU79 118 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 LINC00846Q9NV44 126 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 LAMTOR3Q9UHA4 124 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 LAMA3Q16787 3333 aa4.81□□□□□ -1.64
USP28-207ENST00000538475 SZT2Q5T011 3432 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 G3V318 75 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 PDE6GP18545 87 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 HRCT1Q6UXD1 115 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 Q6ZSV7 163 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 ORMDL1Q9P0S3 153 aa4.8□□□□□ -1.64
USP28-207ENST00000538475 NBEAQ8NFP9 2946 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 TRBV10-1A0A0K0K1A3 114 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 SMIM1B2RUZ4 78 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 F6UB75 175 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 LYNX1G3V0Z9 82 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 K7EQG2 157 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 TMEM256-PLSCR3K7ERE1 68 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 ERC2-IT1O76042 136 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 OXTP01178 125 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 LYNX1P0DP58 116 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 XCL1P47992 114 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 PRB3Q04118 309 aaPredicted RBP4.79□□□□□ -1.64
USP28-207ENST00000538475 LINC00242Q5T6M2 205 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 UNQ9165/PRO28630Q6UXU0 137 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 SOSTDC1Q6X4U4 206 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 FAM218AQ96MZ4 157 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 UBL5Q9BZL1 73 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 XCL2Q9UBD3 114 aa4.79□□□□□ -1.64
USP28-207ENST00000538475 FRYQ5TBA9 3013 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 IGKV3D-7A0A0C4DH55 119 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 IBA57-AS1B1ANH7 110 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 LY6G6DO95868 133 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 SAA4P35542 130 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 C11orf71Q6IPW1 123 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 C11orf44Q8N8P7 122 aa4.78□□□□□ -1.64
USP28-207ENST00000538475 ZDBF2Q9HCK1 2354 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 PTPRQQ9UMZ3 2332 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 IGHV3OR16-12A0A075B7B8 117 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 RS1O15537 224 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 TRBV12-3P01733 135 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 CYSTM1Q9H1C7 97 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 SND1-IT1Q9HBX3 110 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 C14orf132Q9NPU4 83 aa4.77□□□□□ -1.65
USP28-207ENST00000538475 TRIOO75962 3097 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 CACNA1HO95180 2353 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 H7BZZ5 65 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 J3QLI3 93 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 APC2O95996 2303 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 CXCL6P80162 114 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 SMIM11BQ8TCY0 68 aa4.76□□□□□ -1.65
USP28-207ENST00000538475 BBC3Q96PG8 261 aaPredicted RBP4.76□□□□□ -1.65
USP28-207ENST00000538475 ANKHD1Q8IWZ3 2542 aaKnown RBP4.76□□□□□ -1.65
USP28-207ENST00000538475 LOC110117498A0A087WWA1 95 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 A8MZ25 164 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 CFHR3Q02985 330 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 LPAL2Q16609 132 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 TMEM86BQ8N661 226 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 LINC00337Q8N6G1 96 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 Q8NA96 180 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 MUC7Q8TAX7 377 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 C10orf105Q8TEF2 133 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 USP34Q70CQ2 3546 aa4.75□□□□□ -1.65
USP28-207ENST00000538475 PRRC2CQ9Y520 2896 aaKnown RBP4.74□□□□□ -1.65
USP28-207ENST00000538475 IGKV2-28A0A075B6P5 120 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 TRBV6-4A0A1B0GX49 114 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 K7EQD1 137 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 LECT2O14960 151 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 TNRC18O15417 2968 aaPredicted RBP4.74□□□□□ -1.65
USP28-207ENST00000538475 IGKV2D-28P01615 120 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 IGHV4-38-2P0DP08 117 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 BLCAPP62952 87 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 RPL36AP83881 106 aaKnown RBP4.74□□□□□ -1.65
USP28-207ENST00000538475 COX6A2Q02221 97 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 C20orf197Q8N268 126 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 COX7B2Q8TF08 81 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 RPL36ALQ969Q0 106 aaKnown RBP4.74□□□□□ -1.65
USP28-207ENST00000538475 Q9HAA7 133 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 CDC42SE2Q9NRR3 84 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 DSPP15924 2871 aaKnown RBP4.74□□□□□ -1.65
USP28-207ENST00000538475 COL6A6A6NMZ7 2263 aa4.74□□□□□ -1.65
USP28-207ENST00000538475 GPR179Q6PRD1 2367 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 CDH23Q9H251 3354 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 PIEZO2Q9H5I5 2752 aa4.73□□□□□ -1.65
USP28-207ENST00000538475 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms