RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C ERR3P42222 437 aa3.72□□□□□ -1.81
CDC40YDR364C QRI7P43122 407 aa3.72□□□□□ -1.81
CDC40YDR364C APM1Q00776 475 aaPredicted RBP3.72□□□□□ -1.81
CDC40YDR364C LRS4Q04087 347 aaKnown RBP3.72□□□□□ -1.81
CDC40YDR364C RIX7Q07844 837 aaKnown RBP3.72□□□□□ -1.81
CDC40YDR364C SGO1Q08490 590 aa3.72□□□□□ -1.81
CDC40YDR364C CTI6Q08923 506 aa3.72□□□□□ -1.81
CDC40YDR364C NEW1Q08972 1196 aaKnown RBP3.72□□□□□ -1.81
CDC40YDR364C YOL114CQ12322 202 aa3.72□□□□□ -1.81
CDC40YDR364C MSS18P08593 268 aa3.71□□□□□ -1.82
CDC40YDR364C MSH1P25846 959 aa3.71□□□□□ -1.82
CDC40YDR364C SEC65P29478 273 aa3.71□□□□□ -1.82
CDC40YDR364C BEM3P32873 1128 aa3.71□□□□□ -1.82
CDC40YDR364C VHR1P40522 640 aa3.71□□□□□ -1.82
CDC40YDR364C YIR042CP40586 236 aa3.71□□□□□ -1.82
CDC40YDR364C MLC1P53141 149 aa3.71□□□□□ -1.82
CDC40YDR364C NOG2P53742 486 aaKnown RBP3.71□□□□□ -1.82
CDC40YDR364C ASI2P53895 289 aa3.71□□□□□ -1.82
CDC40YDR364C GTR1Q00582 310 aa3.71□□□□□ -1.82
CDC40YDR364C TSR2Q06672 205 aaKnown RBP3.71□□□□□ -1.82
CDC40YDR364C DIB1Q06819 143 aaPredicted RBP3.71□□□□□ -1.82
CDC40YDR364C SNU66Q12420 587 aaPredicted RBP3.71□□□□□ -1.82
CDC40YDR364C RPS21BQ3E754 87 aaKnown RBP3.71□□□□□ -1.82
CDC40YDR364C YOL087CQ99247 1116 aa3.71□□□□□ -1.82
CDC40YDR364C YRF1-3P0CX14 1859 aa3.7□□□□□ -1.82
CDC40YDR364C YRF1-7P0CX15 1859 aa3.7□□□□□ -1.82
CDC40YDR364C YRF1-6P53819 1859 aa3.7□□□□□ -1.82
CDC40YDR364C PRC1P00729 532 aa3.7□□□□□ -1.82
CDC40YDR364C VAS1P07806 1104 aaKnown RBP3.7□□□□□ -1.82
CDC40YDR364C MIH1P23748 554 aa3.7□□□□□ -1.82
CDC40YDR364C CYS3P31373 394 aaKnown RBP3.7□□□□□ -1.82
CDC40YDR364C YKR051WP36142 418 aa3.7□□□□□ -1.82
CDC40YDR364C HXT6P39003 570 aaKnown RBP3.7□□□□□ -1.82
CDC40YDR364C HXT7P39004 570 aa3.7□□□□□ -1.82
CDC40YDR364C YGL242CP53066 181 aa3.7□□□□□ -1.82
CDC40YDR364C CNM67P53865 581 aaKnown RBP3.7□□□□□ -1.82
CDC40YDR364C SSL2Q00578 843 aa3.7□□□□□ -1.82
CDC40YDR364C UBP16Q02863 499 aa3.7□□□□□ -1.82
CDC40YDR364C BLS1Q06071 122 aa3.7□□□□□ -1.82
CDC40YDR364C RPN7Q06103 429 aaKnown RBP3.7□□□□□ -1.82
CDC40YDR364C IRC13Q08630 104 aa3.7□□□□□ -1.82
CDC40YDR364C NUR1Q12066 484 aa3.7□□□□□ -1.82
CDC40YDR364C FOB1O13329 566 aa3.69□□□□□ -1.82
CDC40YDR364C HSC82P15108 705 aaKnown RBP3.69□□□□□ -1.82
CDC40YDR364C MSM1P22438 575 aa3.69□□□□□ -1.82
CDC40YDR364C URA1P28272 314 aaPredicted RBP3.69□□□□□ -1.82
CDC40YDR364C OAF3P36023 863 aa3.69□□□□□ -1.82
CDC40YDR364C PPE1P38796 400 aa3.69□□□□□ -1.82
CDC40YDR364C SAW1P39735 261 aa3.69□□□□□ -1.82
CDC40YDR364C HOS4P40480 1083 aa3.69□□□□□ -1.82
CDC40YDR364C YIR014WP40570 242 aa3.69□□□□□ -1.82
CDC40YDR364C ASK10P48361 1146 aa3.69□□□□□ -1.82
CDC40YDR364C PUS2P53167 370 aa3.69□□□□□ -1.82
CDC40YDR364C HOL1P53389 586 aa3.69□□□□□ -1.82
CDC40YDR364C TEP1P53916 434 aa3.69□□□□□ -1.82
CDC40YDR364C IRC3Q06683 689 aa3.69□□□□□ -1.82
CDC40YDR364C YDR056CQ12025 205 aa3.69□□□□□ -1.82
CDC40YDR364C HFI1Q12060 488 aa3.69□□□□□ -1.82
CDC40YDR364C TAF3Q12297 353 aa3.69□□□□□ -1.82
CDC40YDR364C RTP1Q12751 981 aa3.69□□□□□ -1.82
CDC40YDR364C Q0142Q9ZZW4 58 aa3.69□□□□□ -1.82
CDC40YDR364C POM152P39685 1337 aa3.69□□□□□ -1.82
CDC40YDR364C RER1P25560 188 aa3.68□□□□□ -1.82
CDC40YDR364C BLI1P35727 113 aa3.68□□□□□ -1.82
CDC40YDR364C MNN4P36044 1178 aa3.68□□□□□ -1.82
CDC40YDR364C KTR3P38130 404 aaPredicted RBP3.68□□□□□ -1.82
CDC40YDR364C PSY4P38193 441 aa3.68□□□□□ -1.82
CDC40YDR364C FAT1P38225 669 aa3.68□□□□□ -1.82
CDC40YDR364C SET5P38890 526 aaKnown RBP3.68□□□□□ -1.82
CDC40YDR364C HXT16P47185 567 aa3.68□□□□□ -1.82
CDC40YDR364C OPY2Q06810 360 aa3.68□□□□□ -1.82
CDC40YDR364C THI3Q07471 609 aa3.68□□□□□ -1.82
CDC40YDR364C RIM20Q12033 661 aa3.68□□□□□ -1.82
CDC40YDR364C CWC2Q12046 339 aaPredicted RBP3.68□□□□□ -1.82
CDC40YDR364C YOR022CQ12204 715 aa3.68□□□□□ -1.82
CDC40YDR364C YBR182C-AQ8TGU6 64 aa3.68□□□□□ -1.82
CDC40YDR364C LAT1P12695 482 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C PCT1P13259 424 aa3.67□□□□□ -1.82
CDC40YDR364C TPM1P17536 199 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C PHO3P24031 467 aa3.67□□□□□ -1.82
CDC40YDR364C NGG1P32494 702 aa3.67□□□□□ -1.82
CDC40YDR364C PET309P32522 965 aaPredicted RBP3.67□□□□□ -1.82
CDC40YDR364C TFC3P34111 1160 aa3.67□□□□□ -1.82
CDC40YDR364C MAL31P38156 614 aa3.67□□□□□ -1.82
CDC40YDR364C CBR1P38626 284 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C OSH3P38713 996 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C FMP52P40008 231 aa3.67□□□□□ -1.82
CDC40YDR364C SRB7P47822 140 aa3.67□□□□□ -1.82
CDC40YDR364C ENP2P48234 707 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C MOT3P54785 490 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C SMX3P54999 86 aaPredicted RBP3.67□□□□□ -1.82
CDC40YDR364C CEG1Q01159 459 aaPredicted RBP3.67□□□□□ -1.82
CDC40YDR364C TRS130Q03660 1102 aa3.67□□□□□ -1.82
CDC40YDR364C SYF1Q04048 859 aaPredicted RBP3.67□□□□□ -1.82
CDC40YDR364C MRI1Q06489 411 aaKnown RBP3.67□□□□□ -1.82
CDC40YDR364C NOP56Q12460 504 aaKnown RBP RIP-Chip data3.67□□□□□ -1.82not detected
CDC40YDR364C RNR2P09938 399 aaKnown RBP3.66□□□□□ -1.82
CDC40YDR364C ATP12P22135 325 aa3.66□□□□□ -1.82
CDC40YDR364C SPO11P23179 398 aa3.66□□□□□ -1.82
CDC40YDR364C MGM1P32266 881 aa3.66□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms