RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 ATXN3LQ9H3M9 355 aa4.78□□□□□ -1.64
HMGB3P17-201ENST00000504195 HNRNPUQ00839 825 aaKnown RBP eCLIP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 PUM1Q14671 1186 aaKnown RBP eCLIP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 SMYD4Q8IYR2 804 aaPredicted RBP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 MARCH10Q8NA82 808 aaPredicted RBP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 CHRDQ9H2X0 955 aa4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 CLEC4MQ9H2X3 399 aaPredicted RBP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 CARS2Q9HA77 564 aaKnown RBP4.77□□□□□ -1.65
HMGB3P17-201ENST00000504195 RNGTTO60942 597 aaKnown RBP4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 SRFP11831 508 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 PCDH1Q08174 1060 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 SPATS1Q496A3 300 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 C8orf34Q49A92 452 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 TOP6BLQ8N6T0 577 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 ABHD4Q8TB40 342 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 EDEM1Q92611 657 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 WDR18Q9BV38 432 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 GTF2IRD1Q9UHL9 959 aa4.76□□□□□ -1.65
HMGB3P17-201ENST00000504195 RFXAPO00287 272 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 TRIM13O60858 407 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 PHACTR2O75167 634 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 INSRRP14616 1297 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 MZF1P28698 734 aaPredicted RBP4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 EHHADHQ08426 723 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 FAM69CQ0P6D2 419 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 TMEM151BQ8IW70 566 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 CRELD1Q96HD1 420 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 PPP1R9AQ9ULJ8 1098 aa4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 CNOT6Q9ULM6 557 aaKnown RBP4.75□□□□□ -1.65
HMGB3P17-201ENST00000504195 GNAT3A8MTJ3 354 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 EREGO14944 169 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 TMPRSS2O15393 492 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 PDGFAP04085 211 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 CLCN7P51798 805 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 DNM1Q05193 864 aaKnown RBP4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 ZNF385BQ569K4 471 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 CFAP70Q5T0N1 1121 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 SPACA3Q8IXA5 215 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 BAHD1Q8TBE0 780 aaPredicted RBP4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 SNX29Q8TEQ0 813 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 GGNBP2Q9H3C7 697 aa4.74□□□□□ -1.65
HMGB3P17-201ENST00000504195 A0A096LPE4 126 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 A0A1W2PPZ6 126 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 ECEL1O95672 775 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 NOM1Q5C9Z4 860 aaKnown RBP4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 ALKBH2Q6NS38 261 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 CAPN12Q6ZSI9 719 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 ATCAYQ86WG3 371 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 SSU72Q9NP77 194 aaKnown RBP4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 C19orf73Q9NVV2 129 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 SRRDQ9UH36 339 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 PCOLCE2Q9UKZ9 415 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 AMOTL2Q9Y2J4 779 aa4.73□□□□□ -1.65
HMGB3P17-201ENST00000504195 METTL12A8MUP2 240 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 TNFRSF21O75509 655 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 SLFN14P0C7P3 912 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 USP5P45974 858 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 ID3Q02535 119 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 NPAS4Q8IUM7 802 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 FANCD2OSQ96PS1 177 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 MYRFQ9Y2G1 1151 aa4.72□□□□□ -1.65
HMGB3P17-201ENST00000504195 OTOL1A6NHN0 477 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 AKAP8O43823 692 aaKnown RBP4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 HCLS1P14317 486 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 AP3B2Q13367 1082 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 ZNF423Q2M1K9 1284 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 PEAR1Q5VY43 1037 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 CLP1Q92989 425 aaKnown RBP4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 CLUAP1Q96AJ1 413 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 GPR20Q99678 358 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 XYLT2Q9H1B5 865 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 ZMIZ1Q9ULJ6 1067 aa4.71□□□□□ -1.66
HMGB3P17-201ENST00000504195 IGF2BP3O00425 579 aaKnown RBP eCLIP4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 SEMA7AO75326 666 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 B3GALT4O96024 378 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 PRKCSHP14314 528 aaPredicted RBP4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 DLG4P78352 724 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 TTLL4Q14679 1199 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 CDCA8Q53HL2 280 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 CCNJLQ8IV13 435 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 HELQQ8TDG4 1101 aa4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 HEXIM2Q96MH2 286 aaKnown RBP4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 TRIM56Q9BRZ2 755 aaKnown RBP4.7□□□□□ -1.66
HMGB3P17-201ENST00000504195 NKPD1Q17RQ9 610 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 TMEM132EQ6IEE7 984 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 MYLIPQ8WY64 445 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 ALPK1Q96QP1 1244 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 SEMA3GQ9NS98 782 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 PALD1Q9ULE6 856 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 KCTD3Q9Y597 815 aa4.69□□□□□ -1.66
HMGB3P17-201ENST00000504195 A6NHS1 94 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 LIG1P18858 919 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 PLP2Q04941 152 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 EFEMP1Q12805 493 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 LIN7BQ9HAP6 207 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 ADAMTS20P59510 1910 aa4.68□□□□□ -1.66
HMGB3P17-201ENST00000504195 EIF1AXP47813 144 aaKnown RBP4.67□□□□□ -1.66
HMGB3P17-201ENST00000504195 TTC6Q86TZ1 520 aa4.67□□□□□ -1.66
HMGB3P17-201ENST00000504195 STK32AQ8WU08 396 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms