RNA–Protein interactions for RNA: YOR054C

VHS3, Transcript of Negative regulatory subunit of protein phosphatase 1 Ppz1p, yeastyeast

Gene VHS3, Length 2,025 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VHS3YOR054C ABP1P15891 592 aaKnown RBP5.56□□□□□ -1.52
VHS3YOR054C MMS1Q06211 1407 aa5.55□□□□□ -1.52
VHS3YOR054C SIS2P36024 562 aa5.55□□□□□ -1.52
VHS3YOR054C YRF1-1P0CX20 1796 aa5.54□□□□□ -1.52
VHS3YOR054C YRF1-5P0CX21 1796 aa5.54□□□□□ -1.52
VHS3YOR054C YRF1-8P0CX22 1796 aa5.54□□□□□ -1.52
VHS3YOR054C URN1Q06525 465 aaKnown RBP5.54□□□□□ -1.52
VHS3YOR054C TOP2P06786 1428 aaKnown RBP5.53□□□□□ -1.52
VHS3YOR054C RPG1P38249 964 aaKnown RBP5.52□□□□□ -1.53
VHS3YOR054C ITT1Q04638 464 aa5.52□□□□□ -1.53
VHS3YOR054C TRM732Q03496 1420 aa5.52□□□□□ -1.53
VHS3YOR054C MMS22Q06164 1454 aa5.52□□□□□ -1.53
VHS3YOR054C RPL17AP05740 184 aaKnown RBP5.52□□□□□ -1.53
VHS3YOR054C RPL17BP46990 184 aaKnown RBP5.52□□□□□ -1.53
VHS3YOR054C DNF2Q12675 1612 aa5.51□□□□□ -1.53
VHS3YOR054C NTE1Q04958 1679 aa5.51□□□□□ -1.53
VHS3YOR054C DRS2P39524 1355 aa5.51□□□□□ -1.53
VHS3YOR054C ENP1P38333 483 aaKnown RBP5.5□□□□□ -1.53
VHS3YOR054C PTP3P40048 928 aa5.5□□□□□ -1.53
VHS3YOR054C TY1B-JR2P47100 1755 aaKnown RBP5.5□□□□□ -1.53
VHS3YOR054C TY1B-ER2Q03619 1755 aa5.5□□□□□ -1.53
VHS3YOR054C TY1B-MR1Q04214 1755 aa5.5□□□□□ -1.53
VHS3YOR054C TY1B-MR2Q04670 1755 aaKnown RBP5.5□□□□□ -1.53
VHS3YOR054C TY1B-LR1Q12088 1755 aaKnown RBP5.5□□□□□ -1.53
VHS3YOR054C TY1B-NL1Q12112 1755 aa5.5□□□□□ -1.53
VHS3YOR054C TY1B-GR1Q12141 1755 aa5.5□□□□□ -1.53
VHS3YOR054C TY1B-BLQ12490 1755 aa5.5□□□□□ -1.53
VHS3YOR054C VPS15P22219 1454 aa5.49□□□□□ -1.53
VHS3YOR054C RPO21P04050 1733 aaKnown RBP5.48□□□□□ -1.53
VHS3YOR054C NUP159P40477 1460 aa5.47□□□□□ -1.53
VHS3YOR054C REB1P21538 810 aa5.43□□□□□ -1.54
VHS3YOR054C YGL015CP33199 130 aa5.43□□□□□ -1.54
VHS3YOR054C YOR093CQ12275 1648 aa5.43□□□□□ -1.54
VHS3YOR054C LEO1P38439 464 aa5.43□□□□□ -1.54
VHS3YOR054C SMC4Q12267 1418 aa5.42□□□□□ -1.54
VHS3YOR054C NUP170P38181 1502 aa5.42□□□□□ -1.54
VHS3YOR054C SPO14P36126 1683 aa5.42□□□□□ -1.54
VHS3YOR054C POL1P13382 1468 aa5.42□□□□□ -1.54
VHS3YOR054C SPP41P38904 1435 aa5.4□□□□□ -1.54
VHS3YOR054C TSR3Q12094 313 aaKnown RBP5.4□□□□□ -1.54
VHS3YOR054C YOR1P53049 1477 aa5.39□□□□□ -1.55
VHS3YOR054C VTH1P40438 1549 aa5.39□□□□□ -1.55
VHS3YOR054C VTH2P40890 1549 aa5.39□□□□□ -1.55
VHS3YOR054C STH1P32597 1359 aa5.38□□□□□ -1.55
VHS3YOR054C DOP1Q03921 1698 aa5.38□□□□□ -1.55
VHS3YOR054C TSC11P40061 1430 aa5.37□□□□□ -1.55
VHS3YOR054C ULS1Q08562 1619 aa5.36□□□□□ -1.55
VHS3YOR054C RIM101P33400 625 aa5.36□□□□□ -1.55
VHS3YOR054C MYO4P32492 1471 aa5.36□□□□□ -1.55
VHS3YOR054C SNT2P53127 1403 aa5.35□□□□□ -1.55
VHS3YOR054C SSP1P38871 571 aa5.35□□□□□ -1.55
VHS3YOR054C TCB2P48231 1178 aa5.35□□□□□ -1.55
VHS3YOR054C SPT7P35177 1332 aa5.34□□□□□ -1.55
VHS3YOR054C TRM3Q07527 1436 aa5.33□□□□□ -1.56
VHS3YOR054C POL5P39985 1022 aaKnown RBP5.33□□□□□ -1.56
VHS3YOR054C STU1P38198 1513 aa5.33□□□□□ -1.56
VHS3YOR054C SPT21P35209 758 aa5.32□□□□□ -1.56
VHS3YOR054C PRS1P32895 427 aaKnown RBP5.31□□□□□ -1.56
VHS3YOR054C MNN4P36044 1178 aa5.31□□□□□ -1.56
VHS3YOR054C CLC1P17891 233 aa5.3□□□□□ -1.56
VHS3YOR054C YFR016CP43597 1233 aaKnown RBP5.3□□□□□ -1.56
VHS3YOR054C SNQ2P32568 1501 aaKnown RBP5.3□□□□□ -1.56
VHS3YOR054C MLP2P40457 1679 aa5.3□□□□□ -1.56
VHS3YOR054C BUD3P25558 1636 aa5.29□□□□□ -1.56
VHS3YOR054C PDR12Q02785 1511 aa5.29□□□□□ -1.56
VHS3YOR054C SEC3P33332 1336 aaKnown RBP5.28□□□□□ -1.56
VHS3YOR054C IKI3Q06706 1349 aaKnown RBP5.28□□□□□ -1.56
VHS3YOR054C IME2P32581 645 aa5.28□□□□□ -1.56
VHS3YOR054C CHC1P22137 1653 aaKnown RBP5.27□□□□□ -1.57
VHS3YOR054C MET10P39692 1035 aa5.26□□□□□ -1.57
VHS3YOR054C PDR10P51533 1564 aa5.26□□□□□ -1.57
VHS3YOR054C MRPL32P25348 183 aa5.26□□□□□ -1.57
VHS3YOR054C GDB1Q06625 1536 aa5.25□□□□□ -1.57
VHS3YOR054C DNF3Q12674 1656 aa5.25□□□□□ -1.57
VHS3YOR054C IQG1Q12280 1495 aa5.25□□□□□ -1.57
VHS3YOR054C SIS1P25294 352 aaKnown RBP5.24□□□□□ -1.57
VHS3YOR054C RPS0BP46654 252 aaKnown RBP5.23□□□□□ -1.57
VHS3YOR054C ARP8Q12386 881 aaKnown RBP RIP-Chip data5.23□□□□□ -1.57not detected
VHS3YOR054C AIM44Q99299 758 aa5.23□□□□□ -1.57
VHS3YOR054C YAH1Q12184 172 aaKnown RBP5.22□□□□□ -1.57
VHS3YOR054C SAS10Q12136 610 aaPredicted RBP5.21□□□□□ -1.57
VHS3YOR054C CFT1Q06632 1357 aaKnown RBP5.21□□□□□ -1.58
VHS3YOR054C OXP1P28273 1286 aa5.21□□□□□ -1.58
VHS3YOR054C PDR15Q04182 1529 aaKnown RBP5.21□□□□□ -1.58
VHS3YOR054C SSM4P40318 1319 aa5.2□□□□□ -1.58
VHS3YOR054C OPY1P38271 328 aa5.2□□□□□ -1.58
VHS3YOR054C CWC22P53333 577 aaKnown RBP5.2□□□□□ -1.58
VHS3YOR054C EAF7P53911 425 aaKnown RBP5.19□□□□□ -1.58
VHS3YOR054C YTA7P40340 1379 aa5.19□□□□□ -1.58
VHS3YOR054C QCR6P00127 147 aa5.18□□□□□ -1.58
VHS3YOR054C ARO1P08566 1588 aaKnown RBP5.18□□□□□ -1.58
VHS3YOR054C YIL055CP40523 627 aaKnown RBP5.18□□□□□ -1.58
VHS3YOR054C LEU3P08638 886 aa5.17□□□□□ -1.58
VHS3YOR054C RTT106P40161 455 aa5.17□□□□□ -1.58
VHS3YOR054C SEC7P11075 2009 aaKnown RBP5.17□□□□□ -1.58
VHS3YOR054C RPC31P17890 251 aa5.16□□□□□ -1.58
VHS3YOR054C FPR3P38911 411 aaKnown RBP5.16□□□□□ -1.58
VHS3YOR054C SRB8P25648 1427 aa5.16□□□□□ -1.58
VHS3YOR054C NUP157P40064 1391 aaKnown RBP5.16□□□□□ -1.58
VHS3YOR054C USO1P25386 1790 aa5.15□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms