RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C VPS15P22219 1454 aa11.96□□□□□ -0.49
RPD3YNL330C TY1B-JR2P47100 1755 aaKnown RBP11.96□□□□□ -0.5
RPD3YNL330C TY1B-ER2Q03619 1755 aa11.96□□□□□ -0.5
RPD3YNL330C TY1B-MR1Q04214 1755 aa11.96□□□□□ -0.5
RPD3YNL330C TY1B-MR2Q04670 1755 aaKnown RBP11.96□□□□□ -0.5
RPD3YNL330C TY1B-LR1Q12088 1755 aaKnown RBP11.96□□□□□ -0.5
RPD3YNL330C TY1B-NL1Q12112 1755 aa11.96□□□□□ -0.5
RPD3YNL330C TY1B-GR1Q12141 1755 aa11.96□□□□□ -0.5
RPD3YNL330C TY1B-BLQ12490 1755 aa11.96□□□□□ -0.5
RPD3YNL330C CAT8P39113 1433 aa11.95□□□□□ -0.5
RPD3YNL330C GEA2P39993 1459 aaKnown RBP11.94□□□□□ -0.5
RPD3YNL330C POL5P39985 1022 aaKnown RBP11.92□□□□□ -0.5
RPD3YNL330C ESC1Q03661 1658 aaKnown RBP11.92□□□□□ -0.5
RPD3YNL330C NSR1P27476 414 aaKnown RBP RIP-Chip data11.9□□□□□ -0.5not detected
RPD3YNL330C YBT1P32386 1661 aa11.9□□□□□ -0.51
RPD3YNL330C IRC20Q06554 1556 aa11.89□□□□□ -0.51
RPD3YNL330C NTE1Q04958 1679 aa11.84□□□□□ -0.51
RPD3YNL330C SRB8P25648 1427 aa11.83□□□□□ -0.52
RPD3YNL330C RPA190P10964 1664 aaKnown RBP11.83□□□□□ -0.52
RPD3YNL330C RPO21P04050 1733 aaKnown RBP11.83□□□□□ -0.52
RPD3YNL330C DNF1P32660 1571 aa11.81□□□□□ -0.52
RPD3YNL330C NOP2P40991 618 aaKnown RBP11.77□□□□□ -0.53
RPD3YNL330C NUP159P40477 1460 aa11.76□□□□□ -0.53
RPD3YNL330C ENP1P38333 483 aaKnown RBP11.75□□□□□ -0.53
RPD3YNL330C MET10P39692 1035 aa11.75□□□□□ -0.53
RPD3YNL330C CKB1P43639 278 aa11.75□□□□□ -0.53
RPD3YNL330C GDB1Q06625 1536 aa11.75□□□□□ -0.53
RPD3YNL330C PDR10P51533 1564 aa11.74□□□□□ -0.53
RPD3YNL330C SEC3P33332 1336 aaKnown RBP11.73□□□□□ -0.53
RPD3YNL330C ARO1P08566 1588 aaKnown RBP11.73□□□□□ -0.53
RPD3YNL330C PDR12Q02785 1511 aa11.71□□□□□ -0.53
RPD3YNL330C GCN2P15442 1659 aa11.7□□□□□ -0.54
RPD3YNL330C BUD21Q08492 214 aaPredicted RBP11.69□□□□□ -0.54
RPD3YNL330C MMS1Q06211 1407 aa11.67□□□□□ -0.54
RPD3YNL330C NOP7P53261 605 aaKnown RBP11.67□□□□□ -0.54
RPD3YNL330C NUP157P40064 1391 aaKnown RBP11.67□□□□□ -0.54
RPD3YNL330C SPO14P36126 1683 aa11.62□□□□□ -0.55
RPD3YNL330C DIP2Q12220 943 aaPredicted RBP11.6□□□□□ -0.55
RPD3YNL330C IQG1Q12280 1495 aa11.6□□□□□ -0.55
RPD3YNL330C SPT7P35177 1332 aa11.6□□□□□ -0.55
RPD3YNL330C YSP2Q06681 1438 aa11.6□□□□□ -0.55
RPD3YNL330C PAF1P38351 445 aa11.58□□□□□ -0.56
RPD3YNL330C MET5P47169 1442 aa11.57□□□□□ -0.56
RPD3YNL330C PDR5P33302 1511 aaKnown RBP11.57□□□□□ -0.56
RPD3YNL330C BUD3P25558 1636 aa11.56□□□□□ -0.56
RPD3YNL330C YRF1-1P0CX20 1796 aa11.55□□□□□ -0.56
RPD3YNL330C YRF1-5P0CX21 1796 aa11.55□□□□□ -0.56
RPD3YNL330C YRF1-8P0CX22 1796 aa11.55□□□□□ -0.56
RPD3YNL330C ISW2Q08773 1120 aa11.53□□□□□ -0.56
RPD3YNL330C BFR2Q06631 534 aaKnown RBP11.51□□□□□ -0.57
RPD3YNL330C MHP1P43638 1398 aa11.49□□□□□ -0.57
RPD3YNL330C BNR1P40450 1375 aa11.47□□□□□ -0.57
RPD3YNL330C YOR093CQ12275 1648 aa11.45□□□□□ -0.58
RPD3YNL330C LTE1P07866 1435 aa11.43□□□□□ -0.58
RPD3YNL330C PRI1P10363 409 aa11.42□□□□□ -0.58
RPD3YNL330C SEC7P11075 2009 aaKnown RBP11.42□□□□□ -0.58
RPD3YNL330C RAV1P47104 1357 aa11.39□□□□□ -0.59
RPD3YNL330C ORC1P54784 914 aaPredicted RBP11.38□□□□□ -0.59
RPD3YNL330C RTC1Q08281 1341 aa11.38□□□□□ -0.59
RPD3YNL330C TY3B-IQ7LHG5 1498 aaKnown RBP11.38□□□□□ -0.59
RPD3YNL330C CHC1P22137 1653 aaKnown RBP11.38□□□□□ -0.59
RPD3YNL330C PRS1P32895 427 aaKnown RBP11.37□□□□□ -0.59
RPD3YNL330C PSD2P53037 1138 aaKnown RBP11.37□□□□□ -0.59
RPD3YNL330C LEU3P08638 886 aa11.36□□□□□ -0.59
RPD3YNL330C AAD16Q02895 342 aa11.35□□□□□ -0.59
RPD3YNL330C SCT1P32784 759 aa11.34□□□□□ -0.59
RPD3YNL330C YLR419WQ06698 1435 aaKnown RBP11.33□□□□□ -0.6
RPD3YNL330C ESL2P36168 1195 aa11.31□□□□□ -0.6
RPD3YNL330C PDS5Q04264 1277 aa11.31□□□□□ -0.6
RPD3YNL330C TAF5P38129 798 aa11.3□□□□□ -0.6
RPD3YNL330C PDR11P40550 1411 aa11.29□□□□□ -0.6
RPD3YNL330C TRM3Q07527 1436 aa11.29□□□□□ -0.6
RPD3YNL330C DRS2P39524 1355 aa11.27□□□□□ -0.61
RPD3YNL330C AVT3P36062 692 aa11.26□□□□□ -0.61
RPD3YNL330C RPG1P38249 964 aaKnown RBP11.26□□□□□ -0.61
RPD3YNL330C KIP3P53086 805 aaKnown RBP11.26□□□□□ -0.61
RPD3YNL330C VMR1P38735 1592 aa11.24□□□□□ -0.61
RPD3YNL330C PRY3P47033 881 aa11.24□□□□□ -0.61
RPD3YNL330C NUP188P52593 1655 aaKnown RBP11.24□□□□□ -0.61
RPD3YNL330C IML1P47170 1584 aa11.23□□□□□ -0.61
RPD3YNL330C DOP1Q03921 1698 aa11.23□□□□□ -0.61
RPD3YNL330C TFA1P36100 482 aa11.16□□□□□ -0.62
RPD3YNL330C SPE2P21182 396 aa11.15□□□□□ -0.62
RPD3YNL330C URN1Q06525 465 aaKnown RBP11.14□□□□□ -0.63
RPD3YNL330C NUP192P47054 1683 aa11.13□□□□□ -0.63
RPD3YNL330C NST1P53935 1240 aa11.11□□□□□ -0.63
RPD3YNL330C DNF2Q12675 1612 aa11.11□□□□□ -0.63
RPD3YNL330C RPP0P05317 312 aaKnown RBP11.09□□□□□ -0.63
RPD3YNL330C IPL1P38991 367 aa11.09□□□□□ -0.63
RPD3YNL330C TYS1P36421 394 aaKnown RBP11.07□□□□□ -0.64
RPD3YNL330C CDC45Q08032 650 aa11.07□□□□□ -0.64
RPD3YNL330C VPS27P40343 622 aaKnown RBP11.06□□□□□ -0.64
RPD3YNL330C ALD4P46367 519 aaKnown RBP11.06□□□□□ -0.64
RPD3YNL330C TAF8Q03750 510 aa11.06□□□□□ -0.64
RPD3YNL330C IOC4Q04213 475 aa11.06□□□□□ -0.64
RPD3YNL330C NAP1P25293 417 aaKnown RBP11.05□□□□□ -0.64
RPD3YNL330C YAP3P38749 330 aa11.05□□□□□ -0.64
RPD3YNL330C RTG3P38165 486 aa11.04□□□□□ -0.64
RPD3YNL330C CHZ1P40019 153 aaPredicted RBP11.04□□□□□ -0.64
RPD3YNL330C BCK1Q01389 1478 aa11.02□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms