RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C TRM732Q03496 1420 aa8.1□□□□□ -1.11
NUP116YMR047C SNT2P53127 1403 aa8.09□□□□□ -1.11
NUP116YMR047C MLP2P40457 1679 aa8.07□□□□□ -1.12
NUP116YMR047C TSC11P40061 1430 aa8.07□□□□□ -1.12
NUP116YMR047C NUP159P40477 1460 aa8.06□□□□□ -1.12
NUP116YMR047C SNQ2P32568 1501 aaKnown RBP8.06□□□□□ -1.12
NUP116YMR047C YTA7P40340 1379 aa8.05□□□□□ -1.12
NUP116YMR047C VPS15P22219 1454 aa8.03□□□□□ -1.12
NUP116YMR047C PDR12Q02785 1511 aa8.03□□□□□ -1.12
NUP116YMR047C SPO14P36126 1683 aa8.02□□□□□ -1.13
NUP116YMR047C IRC20Q06554 1556 aa8□□□□□ -1.13
NUP116YMR047C DOP1Q03921 1698 aa7.95□□□□□ -1.14
NUP116YMR047C TRM3Q07527 1436 aa7.94□□□□□ -1.14
NUP116YMR047C NUP170P38181 1502 aa7.93□□□□□ -1.14
NUP116YMR047C BUD3P25558 1636 aa7.93□□□□□ -1.14
NUP116YMR047C DNF2Q12675 1612 aa7.93□□□□□ -1.14
NUP116YMR047C STH1P32597 1359 aa7.93□□□□□ -1.14
NUP116YMR047C ULS1Q08562 1619 aa7.92□□□□□ -1.14
NUP116YMR047C GDB1Q06625 1536 aa7.92□□□□□ -1.14
NUP116YMR047C DRS2P39524 1355 aa7.9□□□□□ -1.14
NUP116YMR047C RQC2Q12532 1038 aaKnown RBP7.87□□□□□ -1.15
NUP116YMR047C MMS1Q06211 1407 aa7.85□□□□□ -1.15
NUP116YMR047C CHC1P22137 1653 aaKnown RBP7.84□□□□□ -1.15
NUP116YMR047C MIF2P35201 549 aa7.83□□□□□ -1.16
NUP116YMR047C IQG1Q12280 1495 aa7.81□□□□□ -1.16
NUP116YMR047C ITT1Q04638 464 aa7.79□□□□□ -1.16
NUP116YMR047C PDR15Q04182 1529 aaKnown RBP7.77□□□□□ -1.16
NUP116YMR047C PDR10P51533 1564 aa7.77□□□□□ -1.17
NUP116YMR047C CAT8P39113 1433 aa7.77□□□□□ -1.17
NUP116YMR047C YOR093CQ12275 1648 aa7.77□□□□□ -1.17
NUP116YMR047C HAP1P0CE41 1502 aa7.76□□□□□ -1.17
NUP116YMR047C MET10P39692 1035 aa7.75□□□□□ -1.17
NUP116YMR047C YBT1P32386 1661 aa7.75□□□□□ -1.17
NUP116YMR047C ARO1P08566 1588 aaKnown RBP7.74□□□□□ -1.17
NUP116YMR047C TAF7Q05021 590 aa7.7□□□□□ -1.18
NUP116YMR047C TY3B-GQ99315 1547 aa7.68□□□□□ -1.18
NUP116YMR047C SEC7P11075 2009 aaKnown RBP7.66□□□□□ -1.18
NUP116YMR047C DNF3Q12674 1656 aa7.66□□□□□ -1.18
NUP116YMR047C NUP157P40064 1391 aaKnown RBP7.65□□□□□ -1.19
NUP116YMR047C BFR2Q06631 534 aaKnown RBP7.6□□□□□ -1.19
NUP116YMR047C RTT106P40161 455 aa7.58□□□□□ -1.2
NUP116YMR047C GEA1P47102 1408 aaPredicted RBP7.58□□□□□ -1.2
NUP116YMR047C ABP1P15891 592 aaKnown RBP7.55□□□□□ -1.2
NUP116YMR047C YSP2Q06681 1438 aa7.54□□□□□ -1.2
NUP116YMR047C TY1B-NL2Q99337 1749 aaKnown RBP7.52□□□□□ -1.21
NUP116YMR047C NUP188P52593 1655 aaKnown RBP7.5□□□□□ -1.21
NUP116YMR047C PDR5P33302 1511 aaKnown RBP7.45□□□□□ -1.22
NUP116YMR047C VMR1P38735 1592 aa7.45□□□□□ -1.22
NUP116YMR047C SRB8P25648 1427 aa7.45□□□□□ -1.22
NUP116YMR047C YFR006WP43590 535 aa7.44□□□□□ -1.22
NUP116YMR047C BNR1P40450 1375 aa7.43□□□□□ -1.22
NUP116YMR047C IML1P47170 1584 aa7.41□□□□□ -1.22
NUP116YMR047C URN1Q06525 465 aaKnown RBP7.4□□□□□ -1.22
NUP116YMR047C GCN2P15442 1659 aa7.38□□□□□ -1.23
NUP116YMR047C YAP3P38749 330 aa7.36□□□□□ -1.23
NUP116YMR047C USO1P25386 1790 aa7.35□□□□□ -1.23
NUP116YMR047C SAS10Q12136 610 aaPredicted RBP7.29□□□□□ -1.24
NUP116YMR047C MAK10Q02197 733 aa7.28□□□□□ -1.24
NUP116YMR047C IFH1P39520 1085 aa7.26□□□□□ -1.25
NUP116YMR047C IKI3Q06706 1349 aaKnown RBP7.26□□□□□ -1.25
NUP116YMR047C NUP192P47054 1683 aa7.23□□□□□ -1.25
NUP116YMR047C YMR196WQ04336 1088 aa7.23□□□□□ -1.25
NUP116YMR047C IPL1P38991 367 aa7.2□□□□□ -1.26
NUP116YMR047C CKB1P43639 278 aa7.19□□□□□ -1.26
NUP116YMR047C CFT1Q06632 1357 aaKnown RBP7.17□□□□□ -1.26
NUP116YMR047C BUD21Q08492 214 aaPredicted RBP7.15□□□□□ -1.27
NUP116YMR047C BCK1Q01389 1478 aa7.14□□□□□ -1.27
NUP116YMR047C RAV1P47104 1357 aa7.1□□□□□ -1.27
NUP116YMR047C YRF1-2P40105 1681 aa7.09□□□□□ -1.27
NUP116YMR047C PDR11P40550 1411 aa7.07□□□□□ -1.28
NUP116YMR047C SSM4P40318 1319 aa7.04□□□□□ -1.28
NUP116YMR047C YAH1Q12184 172 aaKnown RBP7.03□□□□□ -1.28
NUP116YMR047C TYS1P36421 394 aaKnown RBP7.02□□□□□ -1.28
NUP116YMR047C RTC1Q08281 1341 aa7.01□□□□□ -1.29
NUP116YMR047C RRP5Q05022 1729 aaKnown RBP7.01□□□□□ -1.29
NUP116YMR047C THI12P42883 340 aa6.99□□□□□ -1.29
NUP116YMR047C THI5P43534 340 aa6.99□□□□□ -1.29
NUP116YMR047C THI11P47183 340 aa6.99□□□□□ -1.29
NUP116YMR047C THI13Q07748 340 aa6.99□□□□□ -1.29
NUP116YMR047C EDE1P34216 1381 aa6.98□□□□□ -1.29
NUP116YMR047C PTP3P40048 928 aa6.97□□□□□ -1.29
NUP116YMR047C TY3B-IQ7LHG5 1498 aaKnown RBP6.91□□□□□ -1.3
NUP116YMR047C YNR029CP53729 429 aaKnown RBP6.91□□□□□ -1.3
NUP116YMR047C TY4B-HP0C2J7 1802 aa6.9□□□□□ -1.3
NUP116YMR047C TY4B-JP47024 1803 aa6.9□□□□□ -1.3
NUP116YMR047C PAF1P38351 445 aa6.89□□□□□ -1.31
NUP116YMR047C ALD4P46367 519 aaKnown RBP6.88□□□□□ -1.31
NUP116YMR047C KRE5P22023 1365 aa6.87□□□□□ -1.31
NUP116YMR047C MRX12P47084 519 aa6.86□□□□□ -1.31
NUP116YMR047C URB1P34241 1764 aaKnown RBP6.83□□□□□ -1.32
NUP116YMR047C PSK1P31374 1356 aa6.83□□□□□ -1.32
NUP116YMR047C NAP1P25293 417 aaKnown RBP6.82□□□□□ -1.32
NUP116YMR047C SCT1P32784 759 aa6.82□□□□□ -1.32
NUP116YMR047C RIA1P53893 1110 aa6.82□□□□□ -1.32
NUP116YMR047C ADE6P38972 1358 aaKnown RBP6.82□□□□□ -1.32
NUP116YMR047C FKS3Q04952 1785 aa6.81□□□□□ -1.32
NUP116YMR047C RAD9P14737 1309 aa6.81□□□□□ -1.32
NUP116YMR047C GLN1P32288 370 aaKnown RBP6.8□□□□□ -1.32
NUP116YMR047C ESL2P36168 1195 aa6.79□□□□□ -1.32
NUP116YMR047C YIL055CP40523 627 aaKnown RBP6.79□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms