RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeastyeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC39YLR440C TY1B-JR1P47098 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-ML2Q03434 1755 aaKnown RBP6.53□□□□□ -1.36
SEC39YLR440C TY1B-ER1Q03612 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-ML1Q04711 1755 aaKnown RBP6.53□□□□□ -1.36
SEC39YLR440C TY1B-GR2Q12269 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-OLQ12273 1755 aa6.53□□□□□ -1.36
SEC39YLR440C TY1B-PLQ12414 1755 aaKnown RBP6.53□□□□□ -1.36
SEC39YLR440C PSH1Q12161 406 aa6.52□□□□□ -1.37
SEC39YLR440C TY1B-DR3Q99231 1755 aa6.52□□□□□ -1.37
SEC39YLR440C BNI1P41832 1953 aa6.51□□□□□ -1.37
SEC39YLR440C POL1P13382 1468 aa6.51□□□□□ -1.37
SEC39YLR440C TRM732Q03496 1420 aa6.51□□□□□ -1.37
SEC39YLR440C GEA2P39993 1459 aaKnown RBP6.5□□□□□ -1.37
SEC39YLR440C ITT1Q04638 464 aa6.5□□□□□ -1.37
SEC39YLR440C RLP24Q07915 199 aaKnown RBP6.49□□□□□ -1.37
SEC39YLR440C SMC4Q12267 1418 aa6.47□□□□□ -1.37
SEC39YLR440C LEU3P08638 886 aa6.47□□□□□ -1.37
SEC39YLR440C YOR1P53049 1477 aa6.47□□□□□ -1.37
SEC39YLR440C SPP41P38904 1435 aa6.46□□□□□ -1.38
SEC39YLR440C GIN4Q12263 1142 aa6.46□□□□□ -1.38
SEC39YLR440C STU1P38198 1513 aa6.45□□□□□ -1.38
SEC39YLR440C NUP159P40477 1460 aa6.45□□□□□ -1.38
SEC39YLR440C YRF1-1P0CX20 1796 aa6.43□□□□□ -1.38
SEC39YLR440C YRF1-5P0CX21 1796 aa6.43□□□□□ -1.38
SEC39YLR440C YRF1-8P0CX22 1796 aa6.43□□□□□ -1.38
SEC39YLR440C BRL1P38770 471 aa6.43□□□□□ -1.38
SEC39YLR440C MMS1Q06211 1407 aa6.43□□□□□ -1.38
SEC39YLR440C VPS15P22219 1454 aa6.42□□□□□ -1.38
SEC39YLR440C ABP1P15891 592 aaKnown RBP6.42□□□□□ -1.38
SEC39YLR440C TOA1P32773 286 aa6.41□□□□□ -1.38
SEC39YLR440C HIF1Q12373 385 aa6.41□□□□□ -1.38
SEC39YLR440C TSC11P40061 1430 aa6.41□□□□□ -1.38
SEC39YLR440C DMA2P53924 522 aa6.41□□□□□ -1.38
SEC39YLR440C YPR148CQ06523 435 aa6.41□□□□□ -1.38
SEC39YLR440C DRS2P39524 1355 aa6.4□□□□□ -1.38
SEC39YLR440C SWE1P32944 819 aa6.4□□□□□ -1.39
SEC39YLR440C RLF2Q12495 606 aa6.4□□□□□ -1.39
SEC39YLR440C VTH1P40438 1549 aa6.4□□□□□ -1.39
SEC39YLR440C VTH2P40890 1549 aa6.4□□□□□ -1.39
SEC39YLR440C TY1B-JR2P47100 1755 aaKnown RBP6.4□□□□□ -1.39
SEC39YLR440C TY1B-ER2Q03619 1755 aa6.4□□□□□ -1.39
SEC39YLR440C TY1B-MR1Q04214 1755 aa6.4□□□□□ -1.39
SEC39YLR440C TY1B-MR2Q04670 1755 aaKnown RBP6.4□□□□□ -1.39
SEC39YLR440C TY1B-LR1Q12088 1755 aaKnown RBP6.4□□□□□ -1.39
SEC39YLR440C TY1B-NL1Q12112 1755 aa6.4□□□□□ -1.39
SEC39YLR440C TY1B-GR1Q12141 1755 aa6.4□□□□□ -1.39
SEC39YLR440C TY1B-BLQ12490 1755 aa6.4□□□□□ -1.39
SEC39YLR440C ENV11P53246 860 aa6.39□□□□□ -1.39
SEC39YLR440C SUB1P54000 292 aaKnown RBP6.39□□□□□ -1.39
SEC39YLR440C NTE1Q04958 1679 aa6.39□□□□□ -1.39
SEC39YLR440C RPN1P38764 993 aaKnown RBP6.38□□□□□ -1.39
SEC39YLR440C FPR3P38911 411 aaKnown RBP6.38□□□□□ -1.39
SEC39YLR440C VPS72Q03388 795 aa6.38□□□□□ -1.39
SEC39YLR440C RPS0AP32905 252 aaKnown RBP6.37□□□□□ -1.39
SEC39YLR440C NUG1P40010 520 aaKnown RBP6.37□□□□□ -1.39
SEC39YLR440C HSP82P02829 709 aaKnown RBP6.37□□□□□ -1.39
SEC39YLR440C PLP2Q12017 286 aa6.36□□□□□ -1.39
SEC39YLR440C RPO21P04050 1733 aaKnown RBP6.36□□□□□ -1.39
SEC39YLR440C MYO4P32492 1471 aa6.35□□□□□ -1.39
SEC39YLR440C SPT2P06843 333 aaPredicted RBP6.35□□□□□ -1.39
SEC39YLR440C ASF1P32447 279 aa6.34□□□□□ -1.39
SEC39YLR440C YFR006WP43590 535 aa6.34□□□□□ -1.39
SEC39YLR440C SNT2P53127 1403 aa6.33□□□□□ -1.4
SEC39YLR440C IRC20Q06554 1556 aa6.32□□□□□ -1.4
SEC39YLR440C SNQ2P32568 1501 aaKnown RBP6.31□□□□□ -1.4
SEC39YLR440C NOP53Q12080 455 aaKnown RBP6.31□□□□□ -1.4
SEC39YLR440C SAS10Q12136 610 aaPredicted RBP6.3□□□□□ -1.4
SEC39YLR440C NHA1Q99271 985 aa6.3□□□□□ -1.4
SEC39YLR440C NUP170P38181 1502 aa6.29□□□□□ -1.4
SEC39YLR440C DNF2Q12675 1612 aa6.29□□□□□ -1.4
SEC39YLR440C YTA7P40340 1379 aa6.29□□□□□ -1.4
SEC39YLR440C ENP1P38333 483 aaKnown RBP6.28□□□□□ -1.4
SEC39YLR440C MET10P39692 1035 aa6.28□□□□□ -1.4
SEC39YLR440C ATG36P46983 293 aa6.27□□□□□ -1.41
SEC39YLR440C TCB2P48231 1178 aa6.27□□□□□ -1.41
SEC39YLR440C TPO2P53283 614 aa6.27□□□□□ -1.41
SEC39YLR440C STH1P32597 1359 aa6.26□□□□□ -1.41
SEC39YLR440C BRN1P38170 754 aa6.26□□□□□ -1.41
SEC39YLR440C TLG1Q03322 224 aa6.26□□□□□ -1.41
SEC39YLR440C SSA1P10591 642 aaKnown RBP6.26□□□□□ -1.41
SEC39YLR440C SSA2P10592 639 aaKnown RBP6.26□□□□□ -1.41
SEC39YLR440C SPT16P32558 1035 aaKnown RBP6.26□□□□□ -1.41
SEC39YLR440C TIF4632P39936 914 aaKnown RBP6.25□□□□□ -1.41
SEC39YLR440C OSW7P43611 510 aa6.25□□□□□ -1.41
SEC39YLR440C SPO14P36126 1683 aa6.25□□□□□ -1.41
SEC39YLR440C RNA1P11745 407 aaKnown RBP6.25□□□□□ -1.41
SEC39YLR440C MPP10P47083 593 aaKnown RBP6.25□□□□□ -1.41
SEC39YLR440C ULS1Q08562 1619 aa6.24□□□□□ -1.41
SEC39YLR440C RTS3P53289 263 aa6.23□□□□□ -1.41
SEC39YLR440C PDR12Q02785 1511 aa6.23□□□□□ -1.41
SEC39YLR440C RTT106P40161 455 aa6.23□□□□□ -1.41
SEC39YLR440C NSR1P27476 414 aaKnown RBP RIP-Chip data6.22□□□□□ -1.41 RIP-Chip
SEC39YLR440C FUN12P39730 1002 aaKnown RBP6.22□□□□□ -1.41
SEC39YLR440C AAD16Q02895 342 aa6.22□□□□□ -1.41
SEC39YLR440C SPT7P35177 1332 aa6.21□□□□□ -1.42
SEC39YLR440C HAA1Q12753 694 aaKnown RBP6.2□□□□□ -1.42
SEC39YLR440C NAB3P38996 802 aaKnown RBP RIP-Chip data6.2□□□□□ -1.42not detected
SEC39YLR440C DOP1Q03921 1698 aa6.19□□□□□ -1.42
SEC39YLR440C IQG1Q12280 1495 aa6.19□□□□□ -1.42
SEC39YLR440C QCR6P00127 147 aa6.19□□□□□ -1.42
Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms