RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeastyeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC22YLR268W PTC4P38089 393 aa8.17□□□□□ -1.1
SEC22YLR268W YEL023CP39992 682 aa8.16□□□□□ -1.1
SEC22YLR268W CHL1P22516 861 aaPredicted RBP8.14□□□□□ -1.11
SEC22YLR268W BCK2P33306 851 aa8.11□□□□□ -1.11
SEC22YLR268W PRE3P38624 215 aa8.1□□□□□ -1.11
SEC22YLR268W GRE2Q12068 342 aaKnown RBP8.09□□□□□ -1.11
SEC22YLR268W MAK11P20484 414 aaKnown RBP8.08□□□□□ -1.12
SEC22YLR268W RAM2P29703 316 aa8.03□□□□□ -1.12
SEC22YLR268W GUT1P32190 709 aa8.02□□□□□ -1.13
SEC22YLR268W MIF2P35201 549 aa8.02□□□□□ -1.13
SEC22YLR268W PTC3P34221 468 aaKnown RBP8.01□□□□□ -1.13
SEC22YLR268W ATH1P48016 1211 aa8.01□□□□□ -1.13
SEC22YLR268W EDS1P38073 919 aa8□□□□□ -1.13
SEC22YLR268W PML39Q03760 334 aa7.98□□□□□ -1.13
SEC22YLR268W NST1P53935 1240 aa7.95□□□□□ -1.14
SEC22YLR268W COQ8P27697 501 aa7.93□□□□□ -1.14
SEC22YLR268W XDJ1P39102 459 aa7.93□□□□□ -1.14
SEC22YLR268W ELP4Q02884 456 aaKnown RBP7.92□□□□□ -1.14
SEC22YLR268W YDR344CQ05510 147 aa7.92□□□□□ -1.14
SEC22YLR268W ARH1P48360 493 aa7.91□□□□□ -1.14
SEC22YLR268W VRP1P37370 817 aa7.9□□□□□ -1.14
SEC22YLR268W AI4P03878 556 aa7.89□□□□□ -1.15
SEC22YLR268W MPH3P0CE00 602 aa7.88□□□□□ -1.15
SEC22YLR268W SOL3P38858 249 aa7.88□□□□□ -1.15
SEC22YLR268W NOP53Q12080 455 aaKnown RBP7.88□□□□□ -1.15
SEC22YLR268W MID1P41821 548 aa7.85□□□□□ -1.15
SEC22YLR268W SPT23P35210 1082 aa7.82□□□□□ -1.16
SEC22YLR268W PEX29Q03370 554 aa7.81□□□□□ -1.16
SEC22YLR268W ILV3P39522 585 aaKnown RBP7.79□□□□□ -1.16
SEC22YLR268W YGR273CP53329 174 aa7.78□□□□□ -1.16
SEC22YLR268W HAP5Q02516 242 aa7.78□□□□□ -1.16
SEC22YLR268W BNI4P53858 892 aa7.76□□□□□ -1.17
SEC22YLR268W DPS1P04802 557 aaKnown RBP7.75□□□□□ -1.17
SEC22YLR268W YML082WQ04533 649 aaKnown RBP7.72□□□□□ -1.17
SEC22YLR268W MPC54Q08550 464 aa7.72□□□□□ -1.17
SEC22YLR268W PTC2P39966 464 aaKnown RBP7.69□□□□□ -1.18
SEC22YLR268W SLI15P38283 698 aa7.67□□□□□ -1.18
SEC22YLR268W NMA111P53920 997 aa7.65□□□□□ -1.18
SEC22YLR268W DPL1Q05567 589 aa7.65□□□□□ -1.18
SEC22YLR268W KEX1P09620 729 aa7.6□□□□□ -1.19
SEC22YLR268W SRC1Q03707 834 aa7.57□□□□□ -1.2
SEC22YLR268W ISU2Q12056 156 aa7.57□□□□□ -1.2
SEC22YLR268W SET1P38827 1080 aaKnown RBP7.54□□□□□ -1.2
SEC22YLR268W RAM1P22007 431 aa7.53□□□□□ -1.2
SEC22YLR268W YPR015CQ12531 247 aa7.53□□□□□ -1.2
SEC22YLR268W YLR326WQ06170 240 aaKnown RBP7.52□□□□□ -1.21
SEC22YLR268W UBP14P38237 781 aaKnown RBP7.51□□□□□ -1.21
SEC22YLR268W CDC73Q06697 393 aa7.49□□□□□ -1.21
SEC22YLR268W RPP1BP10622 106 aaKnown RBP7.46□□□□□ -1.22
SEC22YLR268W VHR2P40041 505 aa7.46□□□□□ -1.22
SEC22YLR268W RAD54P32863 898 aa7.45□□□□□ -1.22
SEC22YLR268W PCS60P38137 543 aaKnown RBP RIP-Chip data7.45□□□□□ -1.22not detected
SEC22YLR268W RAS1P01119 309 aa7.44□□□□□ -1.22
SEC22YLR268W SAS4Q04003 481 aa7.43□□□□□ -1.22
SEC22YLR268W GYP1Q08484 637 aa7.43□□□□□ -1.22
SEC22YLR268W AMS1P22855 1083 aa7.41□□□□□ -1.22
SEC22YLR268W IFH1P39520 1085 aa7.41□□□□□ -1.22
SEC22YLR268W PDR1P12383 1068 aa7.4□□□□□ -1.22
SEC22YLR268W YDR090CQ03193 310 aa7.36□□□□□ -1.23
SEC22YLR268W SDH2P21801 266 aa7.35□□□□□ -1.23
SEC22YLR268W TRK1P12685 1235 aa7.34□□□□□ -1.23
SEC22YLR268W KIC1P38692 1080 aa7.33□□□□□ -1.24
SEC22YLR268W YEL077CQ3E7X8 1277 aa7.33□□□□□ -1.24
SEC22YLR268W GAP1P19145 602 aaPredicted RBP7.32□□□□□ -1.24
SEC22YLR268W MRF1P30775 413 aaPredicted RBP7.32□□□□□ -1.24
SEC22YLR268W RGA1P39083 1007 aa7.32□□□□□ -1.24
SEC22YLR268W YPR148CQ06523 435 aa7.32□□□□□ -1.24
SEC22YLR268W RGA2Q06407 1009 aa7.31□□□□□ -1.24
SEC22YLR268W TFB4Q12004 338 aa7.31□□□□□ -1.24
SEC22YLR268W CSC1Q06538 782 aa7.3□□□□□ -1.24
SEC22YLR268W PEX21P50091 288 aa7.29□□□□□ -1.24
SEC22YLR268W BUD20Q08004 166 aaPredicted RBP7.29□□□□□ -1.24
SEC22YLR268W YRR1Q12172 810 aa7.29□□□□□ -1.24
SEC22YLR268W REF2P42073 533 aaPredicted RBP7.28□□□□□ -1.24
SEC22YLR268W PRT1P06103 763 aaKnown RBP7.27□□□□□ -1.25
SEC22YLR268W STR2P47164 639 aa7.25□□□□□ -1.25
SEC22YLR268W NUD1P32336 851 aa7.23□□□□□ -1.25
SEC22YLR268W ORC6P38826 435 aa7.23□□□□□ -1.25
SEC22YLR268W ISM1P48526 1002 aa7.23□□□□□ -1.25
SEC22YLR268W TUM1Q08686 304 aaKnown RBP7.22□□□□□ -1.25
SEC22YLR268W MAK21Q12176 1025 aaKnown RBP7.22□□□□□ -1.25
SEC22YLR268W ERG12P07277 443 aa7.19□□□□□ -1.26
SEC22YLR268W COX6P00427 148 aa7.18□□□□□ -1.26
SEC22YLR268W NPL4P33755 580 aa7.17□□□□□ -1.26
SEC22YLR268W TY1A-DR4O74302 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-HP0C2I4 478 aaKnown RBP7.14□□□□□ -1.27
SEC22YLR268W TY1A-AP0CX57 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-PR1P0CX58 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-ORP0CX59 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-PR2P0CX60 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-DR5P0CX65 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-ER2P0CX66 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-GR3P0CX67 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-LR1P0CX68 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-MR2P0CX69 440 aa7.14□□□□□ -1.27
SEC22YLR268W MVP1P40959 511 aaKnown RBP7.14□□□□□ -1.27
SEC22YLR268W TY1A-JR2P47099 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-DR1Q03856 440 aa7.14□□□□□ -1.27
SEC22YLR268W TY1A-ML1Q04706 440 aaKnown RBP7.14□□□□□ -1.27
SEC22YLR268W TY1A-BRQ12217 440 aa7.14□□□□□ -1.27
Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms