RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C TY1B-NL1Q12112 1755 aa3.55□□□□□ -1.84
UFD4YKL010C TY1B-GR1Q12141 1755 aa3.55□□□□□ -1.84
UFD4YKL010C TY1B-BLQ12490 1755 aa3.55□□□□□ -1.84
UFD4YKL010C RIM101P33400 625 aa3.55□□□□□ -1.84
UFD4YKL010C UFD4P33202 1483 aa3.54□□□□□ -1.84
UFD4YKL010C ULS1Q08562 1619 aa3.54□□□□□ -1.84
UFD4YKL010C MAP2P38174 421 aaKnown RBP3.54□□□□□ -1.84
UFD4YKL010C PDR10P51533 1564 aa3.54□□□□□ -1.84
UFD4YKL010C TOP2P06786 1428 aaKnown RBP3.53□□□□□ -1.85
UFD4YKL010C TAF2P23255 1407 aa3.52□□□□□ -1.85
UFD4YKL010C HOP09932 586 aa3.51□□□□□ -1.85
UFD4YKL010C BPT1P14772 1559 aa3.51□□□□□ -1.85
UFD4YKL010C IRC20Q06554 1556 aa3.5□□□□□ -1.85
UFD4YKL010C YTA7P40340 1379 aa3.5□□□□□ -1.85
UFD4YKL010C YBT1P32386 1661 aa3.5□□□□□ -1.85
UFD4YKL010C RPO21P04050 1733 aaKnown RBP3.49□□□□□ -1.85
UFD4YKL010C RPA190P10964 1664 aaKnown RBP3.48□□□□□ -1.85
UFD4YKL010C ESC1Q03661 1658 aaKnown RBP3.48□□□□□ -1.85
UFD4YKL010C NTE1Q04958 1679 aa3.48□□□□□ -1.85
UFD4YKL010C DCD1P06773 312 aa3.48□□□□□ -1.85
UFD4YKL010C BUD31P25337 157 aaPredicted RBP3.48□□□□□ -1.85
UFD4YKL010C SNQ2P32568 1501 aaKnown RBP3.48□□□□□ -1.85
UFD4YKL010C TY3B-GQ99315 1547 aa3.48□□□□□ -1.85
UFD4YKL010C PDR5P33302 1511 aaKnown RBP3.46□□□□□ -1.86
UFD4YKL010C CDC25P04821 1589 aa3.46□□□□□ -1.86
UFD4YKL010C SNT2P53127 1403 aa3.45□□□□□ -1.86
UFD4YKL010C TGL3P40308 642 aa3.44□□□□□ -1.86
UFD4YKL010C SCY1P53009 804 aa3.44□□□□□ -1.86
UFD4YKL010C BCH2P36122 765 aa3.44□□□□□ -1.86
UFD4YKL010C TRM732Q03496 1420 aa3.43□□□□□ -1.86
UFD4YKL010C VTH1P40438 1549 aa3.42□□□□□ -1.86
UFD4YKL010C VTH2P40890 1549 aa3.42□□□□□ -1.86
UFD4YKL010C SLX5P32828 619 aaKnown RBP3.42□□□□□ -1.86
UFD4YKL010C TIF4632P39936 914 aaKnown RBP3.42□□□□□ -1.86
UFD4YKL010C PDR15Q04182 1529 aaKnown RBP3.42□□□□□ -1.86
UFD4YKL010C PDR12Q02785 1511 aa3.4□□□□□ -1.87
UFD4YKL010C OXP1P28273 1286 aa3.4□□□□□ -1.87
UFD4YKL010C GCN2P15442 1659 aa3.4□□□□□ -1.87
UFD4YKL010C YRF1-1P0CX20 1796 aa3.39□□□□□ -1.87
UFD4YKL010C YRF1-5P0CX21 1796 aa3.39□□□□□ -1.87
UFD4YKL010C YRF1-8P0CX22 1796 aa3.39□□□□□ -1.87
UFD4YKL010C SPP41P38904 1435 aa3.39□□□□□ -1.87
UFD4YKL010C PAN1P32521 1480 aa3.38□□□□□ -1.87
UFD4YKL010C IQG1Q12280 1495 aa3.37□□□□□ -1.87
UFD4YKL010C IKI3Q06706 1349 aaKnown RBP3.36□□□□□ -1.87
UFD4YKL010C GDB1Q06625 1536 aa3.36□□□□□ -1.87
UFD4YKL010C TSC11P40061 1430 aa3.36□□□□□ -1.87
UFD4YKL010C GEA2P39993 1459 aaKnown RBP3.35□□□□□ -1.87
UFD4YKL010C CAT8P39113 1433 aa3.35□□□□□ -1.87
UFD4YKL010C ARO1P08566 1588 aaKnown RBP3.35□□□□□ -1.87
UFD4YKL010C DNF1P32660 1571 aa3.35□□□□□ -1.87
UFD4YKL010C SPO14P36126 1683 aa3.35□□□□□ -1.87
UFD4YKL010C EPS1P40557 701 aa3.34□□□□□ -1.87
UFD4YKL010C BDF1P35817 686 aa3.34□□□□□ -1.88
UFD4YKL010C CHC1P22137 1653 aaKnown RBP3.33□□□□□ -1.88
UFD4YKL010C MST1P07236 462 aa3.33□□□□□ -1.88
UFD4YKL010C NSR1P27476 414 aaKnown RBP RIP-Chip data3.33□□□□□ -1.88not detected
UFD4YKL010C GEA1P47102 1408 aaPredicted RBP3.33□□□□□ -1.88
UFD4YKL010C UBP9P39967 754 aa3.32□□□□□ -1.88
UFD4YKL010C YOR093CQ12275 1648 aa3.32□□□□□ -1.88
UFD4YKL010C TFA1P36100 482 aa3.31□□□□□ -1.88
UFD4YKL010C VPS15P22219 1454 aa3.31□□□□□ -1.88
UFD4YKL010C YIL055CP40523 627 aaKnown RBP3.3□□□□□ -1.88
UFD4YKL010C HAP1P0CE41 1502 aa3.3□□□□□ -1.88
UFD4YKL010C RSM7P47150 247 aa3.29□□□□□ -1.88
UFD4YKL010C NUP159P40477 1460 aa3.29□□□□□ -1.88
UFD4YKL010C STH1P32597 1359 aa3.29□□□□□ -1.88
UFD4YKL010C DOP1Q03921 1698 aa3.29□□□□□ -1.88
UFD4YKL010C PTP3P40048 928 aa3.29□□□□□ -1.88
UFD4YKL010C BUD3P25558 1636 aa3.28□□□□□ -1.88
UFD4YKL010C MET5P47169 1442 aa3.27□□□□□ -1.89
UFD4YKL010C TAF7Q05021 590 aa3.27□□□□□ -1.89
UFD4YKL010C BBC1P47068 1157 aa3.26□□□□□ -1.89
UFD4YKL010C AI2P03876 854 aa3.26□□□□□ -1.89
UFD4YKL010C SSM4P40318 1319 aa3.25□□□□□ -1.89
UFD4YKL010C TY3B-IQ7LHG5 1498 aaKnown RBP3.25□□□□□ -1.89
UFD4YKL010C YOR238WQ08634 303 aa3.25□□□□□ -1.89
UFD4YKL010C NUP188P52593 1655 aaKnown RBP3.25□□□□□ -1.89
UFD4YKL010C SEC7P11075 2009 aaKnown RBP3.24□□□□□ -1.89
UFD4YKL010C SIS1P25294 352 aaKnown RBP3.24□□□□□ -1.89
UFD4YKL010C VMR1P38735 1592 aa3.24□□□□□ -1.89
UFD4YKL010C SRB8P25648 1427 aa3.24□□□□□ -1.89
UFD4YKL010C YLR271WQ06152 274 aa3.23□□□□□ -1.89
UFD4YKL010C PSD2P53037 1138 aaKnown RBP3.23□□□□□ -1.89
UFD4YKL010C NUP192P47054 1683 aa3.22□□□□□ -1.89
UFD4YKL010C YAP5P40574 245 aa3.22□□□□□ -1.89
UFD4YKL010C DNF2Q12675 1612 aa3.22□□□□□ -1.89
UFD4YKL010C MMS1Q06211 1407 aa3.21□□□□□ -1.9
UFD4YKL010C YSP2Q06681 1438 aa3.21□□□□□ -1.9
UFD4YKL010C YAH1Q12184 172 aaKnown RBP3.21□□□□□ -1.9
UFD4YKL010C TRM3Q07527 1436 aa3.2□□□□□ -1.9
UFD4YKL010C VNX1P42839 908 aa3.19□□□□□ -1.9
UFD4YKL010C YBL029C-AQ3E756 94 aa3.19□□□□□ -1.9
UFD4YKL010C YLR419WQ06698 1435 aaKnown RBP3.18□□□□□ -1.9
UFD4YKL010C BNI1P41832 1953 aa3.17□□□□□ -1.9
UFD4YKL010C SSP1P38871 571 aa3.17□□□□□ -1.9
UFD4YKL010C DNF3Q12674 1656 aa3.16□□□□□ -1.9
UFD4YKL010C ARP8Q12386 881 aaKnown RBP RIP-Chip data3.15□□□□□ -1.91not detected
UFD4YKL010C IML1P47170 1584 aa3.15□□□□□ -1.91
UFD4YKL010C TIF11P38912 153 aaKnown RBP3.13□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms