RNA–Protein interactions for RNA: YIL061C

SNP1, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeastyeast

Gene SNP1, Length 903 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNP1YIL061C TY1B-GR1Q12141 1755 aa11.28□□□□□ -0.6
SNP1YIL061C TY1B-BLQ12490 1755 aa11.28□□□□□ -0.6
SNP1YIL061C GEA1P47102 1408 aaPredicted RBP11.28□□□□□ -0.6
SNP1YIL061C ESC1Q03661 1658 aaKnown RBP11.27□□□□□ -0.6
SNP1YIL061C NUP170P38181 1502 aa11.25□□□□□ -0.61
SNP1YIL061C RPA190P10964 1664 aaKnown RBP11.24□□□□□ -0.61
SNP1YIL061C IFH1P39520 1085 aa11.22□□□□□ -0.61
SNP1YIL061C TY3B-GQ99315 1547 aa11.18□□□□□ -0.62
SNP1YIL061C NTE1Q04958 1679 aa11.17□□□□□ -0.62
SNP1YIL061C GEA2P39993 1459 aaKnown RBP11.17□□□□□ -0.62
SNP1YIL061C RPO21P04050 1733 aaKnown RBP11.16□□□□□ -0.62
SNP1YIL061C FAP1P53971 965 aa11.14□□□□□ -0.63
SNP1YIL061C IRC20Q06554 1556 aa11.14□□□□□ -0.63
SNP1YIL061C NUP159P40477 1460 aa11.13□□□□□ -0.63
SNP1YIL061C SSM4P40318 1319 aa11.12□□□□□ -0.63
SNP1YIL061C RTT106P40161 455 aa11.12□□□□□ -0.63
SNP1YIL061C CAT8P39113 1433 aa11.1□□□□□ -0.63
SNP1YIL061C VPS15P22219 1454 aa11.09□□□□□ -0.63
SNP1YIL061C MET5P47169 1442 aa11.09□□□□□ -0.63
SNP1YIL061C YBT1P32386 1661 aa11.05□□□□□ -0.64
SNP1YIL061C PDR12Q02785 1511 aa11.04□□□□□ -0.64
SNP1YIL061C MET10P39692 1035 aa11.02□□□□□ -0.65
SNP1YIL061C YRF1-1P0CX20 1796 aa11□□□□□ -0.65
SNP1YIL061C YRF1-5P0CX21 1796 aa11□□□□□ -0.65
SNP1YIL061C YRF1-8P0CX22 1796 aa11□□□□□ -0.65
SNP1YIL061C PDR10P51533 1564 aa10.99□□□□□ -0.65
SNP1YIL061C GDB1Q06625 1536 aa10.98□□□□□ -0.65
SNP1YIL061C SPO14P36126 1683 aa10.96□□□□□ -0.65
SNP1YIL061C SRB8P25648 1427 aa10.94□□□□□ -0.66
SNP1YIL061C NUP157P40064 1391 aaKnown RBP10.94□□□□□ -0.66
SNP1YIL061C ARO1P08566 1588 aaKnown RBP10.94□□□□□ -0.66
SNP1YIL061C YSP2Q06681 1438 aa10.86□□□□□ -0.67
SNP1YIL061C CKB1P43639 278 aa10.85□□□□□ -0.67
SNP1YIL061C IQG1Q12280 1495 aa10.83□□□□□ -0.68
SNP1YIL061C MMS1Q06211 1407 aa10.82□□□□□ -0.68
SNP1YIL061C LTE1P07866 1435 aa10.8□□□□□ -0.68
SNP1YIL061C BUD3P25558 1636 aa10.8□□□□□ -0.68
SNP1YIL061C BUD21Q08492 214 aaPredicted RBP10.76□□□□□ -0.69
SNP1YIL061C GCN2P15442 1659 aa10.75□□□□□ -0.69
SNP1YIL061C SEC7P11075 2009 aaKnown RBP10.72□□□□□ -0.69
SNP1YIL061C BNR1P40450 1375 aa10.71□□□□□ -0.69
SNP1YIL061C TRM3Q07527 1436 aa10.68□□□□□ -0.7
SNP1YIL061C DRS2P39524 1355 aa10.65□□□□□ -0.7
SNP1YIL061C PDR5P33302 1511 aaKnown RBP10.63□□□□□ -0.71
SNP1YIL061C DOP1Q03921 1698 aa10.63□□□□□ -0.71
SNP1YIL061C YOR093CQ12275 1648 aa10.6□□□□□ -0.71
SNP1YIL061C CHC1P22137 1653 aaKnown RBP10.58□□□□□ -0.72
SNP1YIL061C POL5P39985 1022 aaKnown RBP10.58□□□□□ -0.72
SNP1YIL061C NOP7P53261 605 aaKnown RBP10.57□□□□□ -0.72
SNP1YIL061C BNI1P41832 1953 aa10.57□□□□□ -0.72
SNP1YIL061C PRY3P47033 881 aa10.56□□□□□ -0.72
SNP1YIL061C ITT1Q04638 464 aa10.56□□□□□ -0.72
SNP1YIL061C PAF1P38351 445 aa10.55□□□□□ -0.72
SNP1YIL061C BFR2Q06631 534 aaKnown RBP10.52□□□□□ -0.73
SNP1YIL061C VMR1P38735 1592 aa10.52□□□□□ -0.73
SNP1YIL061C RAV1P47104 1357 aa10.52□□□□□ -0.73
SNP1YIL061C PDR11P40550 1411 aa10.51□□□□□ -0.73
SNP1YIL061C NUP188P52593 1655 aaKnown RBP10.5□□□□□ -0.73
SNP1YIL061C RTC1Q08281 1341 aa10.48□□□□□ -0.73
SNP1YIL061C IML1P47170 1584 aa10.47□□□□□ -0.73
SNP1YIL061C DNF2Q12675 1612 aa10.45□□□□□ -0.74
SNP1YIL061C TY3B-IQ7LHG5 1498 aaKnown RBP10.42□□□□□ -0.74
SNP1YIL061C URN1Q06525 465 aaKnown RBP10.4□□□□□ -0.74
SNP1YIL061C IPL1P38991 367 aa10.39□□□□□ -0.75
SNP1YIL061C SEC3P33332 1336 aaKnown RBP10.38□□□□□ -0.75
SNP1YIL061C TYS1P36421 394 aaKnown RBP10.35□□□□□ -0.75
SNP1YIL061C NSR1P27476 414 aaKnown RBP RIP-Chip data10.34□□□□□ -0.75not detected
SNP1YIL061C ESL2P36168 1195 aa10.34□□□□□ -0.75
SNP1YIL061C MHP1P43638 1398 aa10.34□□□□□ -0.75
SNP1YIL061C NUP192P47054 1683 aa10.34□□□□□ -0.75
SNP1YIL061C HAP1P0CE41 1502 aa10.33□□□□□ -0.76
SNP1YIL061C TAF5P38129 798 aa10.32□□□□□ -0.76
SNP1YIL061C YAP3P38749 330 aa10.32□□□□□ -0.76
SNP1YIL061C ENP1P38333 483 aaKnown RBP10.3□□□□□ -0.76
SNP1YIL061C SPT7P35177 1332 aa10.3□□□□□ -0.76
SNP1YIL061C YLR419WQ06698 1435 aaKnown RBP10.28□□□□□ -0.76
SNP1YIL061C ORC1P54784 914 aaPredicted RBP10.27□□□□□ -0.77
SNP1YIL061C KIP3P53086 805 aaKnown RBP10.25□□□□□ -0.77
SNP1YIL061C ALD4P46367 519 aaKnown RBP10.23□□□□□ -0.77
SNP1YIL061C BCK1Q01389 1478 aa10.23□□□□□ -0.77
SNP1YIL061C SCT1P32784 759 aa10.22□□□□□ -0.77
SNP1YIL061C RAD9P14737 1309 aa10.2□□□□□ -0.78
SNP1YIL061C MIF2P35201 549 aa10.2□□□□□ -0.78
SNP1YIL061C SPE2P21182 396 aa10.19□□□□□ -0.78
SNP1YIL061C PDS5Q04264 1277 aa10.19□□□□□ -0.78
SNP1YIL061C PSD2P53037 1138 aaKnown RBP10.18□□□□□ -0.78
SNP1YIL061C DNF3Q12674 1656 aa10.18□□□□□ -0.78
SNP1YIL061C TAF8Q03750 510 aa10.16□□□□□ -0.78
SNP1YIL061C CAB1Q04430 367 aa10.13□□□□□ -0.79
SNP1YIL061C NAP1P25293 417 aaKnown RBP10.11□□□□□ -0.79
SNP1YIL061C MAK10Q02197 733 aa10.09□□□□□ -0.79
SNP1YIL061C CFT1Q06632 1357 aaKnown RBP10.09□□□□□ -0.79
SNP1YIL061C LEU3P08638 886 aa10.08□□□□□ -0.8
SNP1YIL061C KRE5P22023 1365 aa10.08□□□□□ -0.8
SNP1YIL061C CHZ1P40019 153 aaPredicted RBP10.07□□□□□ -0.8
SNP1YIL061C FKH1P40466 484 aa10.07□□□□□ -0.8
SNP1YIL061C NST1P53935 1240 aa10.07□□□□□ -0.8
SNP1YIL061C PRS1P32895 427 aaKnown RBP10.06□□□□□ -0.8
SNP1YIL061C MRX12P47084 519 aa10.06□□□□□ -0.8
SNP1YIL061C ABP1P15891 592 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms