RNA–Protein interactions for RNA: YHR150W

PEX28, Transcript of Peroxisomal integral membrane peroxin, yeastyeast

Gene PEX28, Length 1,740 nt, Biotype protein coding, Subcellular localisation Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEX28YHR150W TY1B-JR2P47100 1755 aaKnown RBP10.59□□□□□ -0.71
PEX28YHR150W TY1B-ER2Q03619 1755 aa10.59□□□□□ -0.71
PEX28YHR150W TY1B-MR1Q04214 1755 aa10.59□□□□□ -0.71
PEX28YHR150W TY1B-MR2Q04670 1755 aaKnown RBP10.59□□□□□ -0.71
PEX28YHR150W TY1B-LR1Q12088 1755 aaKnown RBP10.59□□□□□ -0.71
PEX28YHR150W TY1B-NL1Q12112 1755 aa10.59□□□□□ -0.71
PEX28YHR150W TY1B-GR1Q12141 1755 aa10.59□□□□□ -0.71
PEX28YHR150W TY1B-BLQ12490 1755 aa10.59□□□□□ -0.71
PEX28YHR150W RPA190P10964 1664 aaKnown RBP10.58□□□□□ -0.72
PEX28YHR150W NUP159P40477 1460 aa10.57□□□□□ -0.72
PEX28YHR150W GEA2P39993 1459 aaKnown RBP10.55□□□□□ -0.72
PEX28YHR150W NTE1Q04958 1679 aa10.54□□□□□ -0.72
PEX28YHR150W MET10P39692 1035 aa10.53□□□□□ -0.72
PEX28YHR150W VPS15P22219 1454 aa10.52□□□□□ -0.72
PEX28YHR150W RPO21P04050 1733 aaKnown RBP10.5□□□□□ -0.73
PEX28YHR150W CKB1P43639 278 aa10.5□□□□□ -0.73
PEX28YHR150W TY3B-GQ99315 1547 aa10.49□□□□□ -0.73
PEX28YHR150W CAT8P39113 1433 aa10.48□□□□□ -0.73
PEX28YHR150W MET5P47169 1442 aa10.47□□□□□ -0.73
PEX28YHR150W NSR1P27476 414 aaKnown RBP RIP-Chip data10.45□□□□□ -0.74not detected
PEX28YHR150W IRC20Q06554 1556 aa10.44□□□□□ -0.74
PEX28YHR150W NUP157P40064 1391 aaKnown RBP10.43□□□□□ -0.74
PEX28YHR150W YBT1P32386 1661 aa10.39□□□□□ -0.75
PEX28YHR150W GDB1Q06625 1536 aa10.38□□□□□ -0.75
PEX28YHR150W PDR10P51533 1564 aa10.38□□□□□ -0.75
PEX28YHR150W SRB8P25648 1427 aa10.37□□□□□ -0.75
PEX28YHR150W PDR12Q02785 1511 aa10.36□□□□□ -0.75
PEX28YHR150W BUD21Q08492 214 aaPredicted RBP10.36□□□□□ -0.75
PEX28YHR150W YRF1-1P0CX20 1796 aa10.35□□□□□ -0.75
PEX28YHR150W YRF1-5P0CX21 1796 aa10.35□□□□□ -0.75
PEX28YHR150W YRF1-8P0CX22 1796 aa10.35□□□□□ -0.75
PEX28YHR150W SPO14P36126 1683 aa10.35□□□□□ -0.75
PEX28YHR150W POL5P39985 1022 aaKnown RBP10.34□□□□□ -0.75
PEX28YHR150W ARO1P08566 1588 aaKnown RBP10.32□□□□□ -0.76
PEX28YHR150W NOP2P40991 618 aaKnown RBP10.3□□□□□ -0.76
PEX28YHR150W BUD3P25558 1636 aa10.29□□□□□ -0.76
PEX28YHR150W IQG1Q12280 1495 aa10.27□□□□□ -0.77
PEX28YHR150W LTE1P07866 1435 aa10.24□□□□□ -0.77
PEX28YHR150W YSP2Q06681 1438 aa10.24□□□□□ -0.77
PEX28YHR150W MMS1Q06211 1407 aa10.24□□□□□ -0.77
PEX28YHR150W BNR1P40450 1375 aa10.23□□□□□ -0.77
PEX28YHR150W ENP1P38333 483 aaKnown RBP10.2□□□□□ -0.78
PEX28YHR150W NOP7P53261 605 aaKnown RBP10.2□□□□□ -0.78
PEX28YHR150W DRS2P39524 1355 aa10.2□□□□□ -0.78
PEX28YHR150W SPT7P35177 1332 aa10.17□□□□□ -0.78
PEX28YHR150W PAF1P38351 445 aa10.17□□□□□ -0.78
PEX28YHR150W GCN2P15442 1659 aa10.15□□□□□ -0.78
PEX28YHR150W ITT1Q04638 464 aa10.13□□□□□ -0.79
PEX28YHR150W SEC3P33332 1336 aaKnown RBP10.12□□□□□ -0.79
PEX28YHR150W BFR2Q06631 534 aaKnown RBP10.09□□□□□ -0.79
PEX28YHR150W TRM3Q07527 1436 aa10.09□□□□□ -0.79
PEX28YHR150W SEC7P11075 2009 aaKnown RBP10.07□□□□□ -0.8
PEX28YHR150W ORC1P54784 914 aaPredicted RBP10.04□□□□□ -0.8
PEX28YHR150W DOP1Q03921 1698 aa10.03□□□□□ -0.8
PEX28YHR150W LEU3P08638 886 aa10.02□□□□□ -0.81
PEX28YHR150W URN1Q06525 465 aaKnown RBP9.99□□□□□ -0.81
PEX28YHR150W YOR093CQ12275 1648 aa9.97□□□□□ -0.81
PEX28YHR150W CHC1P22137 1653 aaKnown RBP9.97□□□□□ -0.81
PEX28YHR150W PDR5P33302 1511 aaKnown RBP9.97□□□□□ -0.81
PEX28YHR150W PSD2P53037 1138 aaKnown RBP9.96□□□□□ -0.81
PEX28YHR150W TAF5P38129 798 aa9.96□□□□□ -0.82
PEX28YHR150W MHP1P43638 1398 aa9.95□□□□□ -0.82
PEX28YHR150W RAV1P47104 1357 aa9.95□□□□□ -0.82
PEX28YHR150W BNI1P41832 1953 aa9.95□□□□□ -0.82
PEX28YHR150W PRS1P32895 427 aaKnown RBP9.94□□□□□ -0.82
PEX28YHR150W RTC1Q08281 1341 aa9.94□□□□□ -0.82
PEX28YHR150W PDR11P40550 1411 aa9.93□□□□□ -0.82
PEX28YHR150W TYS1P36421 394 aaKnown RBP9.93□□□□□ -0.82
PEX28YHR150W IPL1P38991 367 aa9.92□□□□□ -0.82
PEX28YHR150W IML1P47170 1584 aa9.91□□□□□ -0.82
PEX28YHR150W VMR1P38735 1592 aa9.9□□□□□ -0.82
PEX28YHR150W ESL2P36168 1195 aa9.9□□□□□ -0.83
PEX28YHR150W YAP3P38749 330 aa9.9□□□□□ -0.83
PEX28YHR150W NUP188P52593 1655 aaKnown RBP9.9□□□□□ -0.83
PEX28YHR150W KIP3P53086 805 aaKnown RBP9.87□□□□□ -0.83
PEX28YHR150W DNF2Q12675 1612 aa9.86□□□□□ -0.83
PEX28YHR150W YLR419WQ06698 1435 aaKnown RBP9.85□□□□□ -0.83
PEX28YHR150W TY3B-IQ7LHG5 1498 aaKnown RBP9.85□□□□□ -0.83
PEX28YHR150W PDS5Q04264 1277 aa9.82□□□□□ -0.84
PEX28YHR150W ABP1P15891 592 aaKnown RBP9.81□□□□□ -0.84
PEX28YHR150W SCT1P32784 759 aa9.79□□□□□ -0.84
PEX28YHR150W SPE2P21182 396 aa9.78□□□□□ -0.84
PEX28YHR150W NST1P53935 1240 aa9.78□□□□□ -0.84
PEX28YHR150W TAF8Q03750 510 aa9.78□□□□□ -0.84
PEX28YHR150W ALD4P46367 519 aaKnown RBP9.77□□□□□ -0.85
PEX28YHR150W RAD9P14737 1309 aa9.77□□□□□ -0.85
PEX28YHR150W NAP1P25293 417 aaKnown RBP9.76□□□□□ -0.85
PEX28YHR150W CAB1Q04430 367 aa9.76□□□□□ -0.85
PEX28YHR150W MRX12P47084 519 aa9.75□□□□□ -0.85
PEX28YHR150W NUP192P47054 1683 aa9.72□□□□□ -0.85
PEX28YHR150W CHZ1P40019 153 aaPredicted RBP9.7□□□□□ -0.86
PEX28YHR150W RIA1P53893 1110 aa9.68□□□□□ -0.86
PEX28YHR150W MAK10Q02197 733 aa9.68□□□□□ -0.86
PEX28YHR150W KRE5P22023 1365 aa9.68□□□□□ -0.86
PEX28YHR150W CFT1Q06632 1357 aaKnown RBP9.68□□□□□ -0.86
PEX28YHR150W FUN12P39730 1002 aaKnown RBP9.68□□□□□ -0.86
PEX28YHR150W BCK1Q01389 1478 aa9.67□□□□□ -0.86
PEX28YHR150W RTG3P38165 486 aa9.65□□□□□ -0.87
PEX28YHR150W DNF3Q12674 1656 aa9.63□□□□□ -0.87
PEX28YHR150W MLP1Q02455 1875 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 5,963 RNA–protein pairs in 11.6 ms