RNA–Protein interactions for RNA: YHR077C

NMD2, Transcript of Protein involved in the nonsense-mediated mRNA decay (NMD) pathway, yeast

Gene NMD2, Length 3,270 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NMD2	YHR077C	NTE1	Q04958	1679 aa		4.64	□□□□□ -1.67
NMD2	YHR077C	SPP41	P38904	1435 aa		4.63	□□□□□ -1.67
NMD2	YHR077C	RSE1	Q04693	1361 aa	Known RBP	4.62	□□□□□ -1.67
NMD2	YHR077C	PAN1	P32521	1480 aa		4.62	□□□□□ -1.67
NMD2	YHR077C	YRF1-1	P0CX20	1796 aa		4.61	□□□□□ -1.67
NMD2	YHR077C	YRF1-5	P0CX21	1796 aa		4.61	□□□□□ -1.67
NMD2	YHR077C	YRF1-8	P0CX22	1796 aa		4.61	□□□□□ -1.67
NMD2	YHR077C	TSC11	P40061	1430 aa		4.6	□□□□□ -1.67
NMD2	YHR077C	STH1	P32597	1359 aa		4.57	□□□□□ -1.68
NMD2	YHR077C	GEA1	P47102	1408 aa	Predicted RBP	4.57	□□□□□ -1.68
NMD2	YHR077C	IKI3	Q06706	1349 aa	Known RBP	4.57	□□□□□ -1.68
NMD2	YHR077C	SSM4	P40318	1319 aa		4.56	□□□□□ -1.68
NMD2	YHR077C	SPO14	P36126	1683 aa		4.55	□□□□□ -1.68
NMD2	YHR077C	SAS10	Q12136	610 aa	Predicted RBP	4.54	□□□□□ -1.68
NMD2	YHR077C	BFR2	Q06631	534 aa	Known RBP	4.53	□□□□□ -1.68
NMD2	YHR077C	ARO1	P08566	1588 aa	Known RBP	4.52	□□□□□ -1.69
NMD2	YHR077C	PDR12	Q02785	1511 aa		4.51	□□□□□ -1.69
NMD2	YHR077C	GDB1	Q06625	1536 aa		4.51	□□□□□ -1.69
NMD2	YHR077C	PDR10	P51533	1564 aa		4.51	□□□□□ -1.69
NMD2	YHR077C	VPS15	P22219	1454 aa		4.51	□□□□□ -1.69
NMD2	YHR077C	GEA2	P39993	1459 aa	Known RBP	4.51	□□□□□ -1.69
NMD2	YHR077C	NUP159	P40477	1460 aa		4.48	□□□□□ -1.69
NMD2	YHR077C	CAT8	P39113	1433 aa		4.46	□□□□□ -1.7
NMD2	YHR077C	GCN2	P15442	1659 aa		4.46	□□□□□ -1.7
NMD2	YHR077C	BUD3	P25558	1636 aa		4.46	□□□□□ -1.7
NMD2	YHR077C	TAF7	Q05021	590 aa		4.45	□□□□□ -1.7
NMD2	YHR077C	IFH1	P39520	1085 aa		4.42	□□□□□ -1.7
NMD2	YHR077C	MET5	P47169	1442 aa		4.42	□□□□□ -1.7
NMD2	YHR077C	PDR5	P33302	1511 aa	Known RBP	4.42	□□□□□ -1.7
NMD2	YHR077C	YSP2	Q06681	1438 aa		4.41	□□□□□ -1.7
NMD2	YHR077C	YOR093C	Q12275	1648 aa		4.41	□□□□□ -1.7
NMD2	YHR077C	CHC1	P22137	1653 aa	Known RBP	4.4	□□□□□ -1.7
NMD2	YHR077C	TFA1	P36100	482 aa		4.4	□□□□□ -1.71
NMD2	YHR077C	IQG1	Q12280	1495 aa		4.39	□□□□□ -1.71
NMD2	YHR077C	RQC2	Q12532	1038 aa	Known RBP	4.39	□□□□□ -1.71
NMD2	YHR077C	SEC7	P11075	2009 aa	Known RBP	4.39	□□□□□ -1.71
NMD2	YHR077C	VMR1	P38735	1592 aa		4.39	□□□□□ -1.71
NMD2	YHR077C	SRB8	P25648	1427 aa		4.39	□□□□□ -1.71
NMD2	YHR077C	NUP157	P40064	1391 aa	Known RBP	4.37	□□□□□ -1.71
NMD2	YHR077C	DOP1	Q03921	1698 aa		4.37	□□□□□ -1.71
NMD2	YHR077C	BNI1	P41832	1953 aa		4.36	□□□□□ -1.71
NMD2	YHR077C	NUP192	P47054	1683 aa		4.35	□□□□□ -1.71
NMD2	YHR077C	PDR11	P40550	1411 aa		4.33	□□□□□ -1.72
NMD2	YHR077C	NUP188	P52593	1655 aa	Known RBP	4.33	□□□□□ -1.72
NMD2	YHR077C	DNF2	Q12675	1612 aa		4.33	□□□□□ -1.72
NMD2	YHR077C	MET10	P39692	1035 aa		4.33	□□□□□ -1.72
NMD2	YHR077C	RTT106	P40161	455 aa		4.31	□□□□□ -1.72
NMD2	YHR077C	MMS1	Q06211	1407 aa		4.3	□□□□□ -1.72
NMD2	YHR077C	LTE1	P07866	1435 aa		4.29	□□□□□ -1.72
NMD2	YHR077C	TY3B-I	Q7LHG5	1498 aa	Known RBP	4.29	□□□□□ -1.72
NMD2	YHR077C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.28	□□□□□ -1.72	not detected
NMD2	YHR077C	IML1	P47170	1584 aa		4.27	□□□□□ -1.73
NMD2	YHR077C	TRM3	Q07527	1436 aa		4.26	□□□□□ -1.73
NMD2	YHR077C	BNR1	P40450	1375 aa		4.25	□□□□□ -1.73
NMD2	YHR077C	CKB1	P43639	278 aa		4.25	□□□□□ -1.73
NMD2	YHR077C	RAV1	P47104	1357 aa		4.23	□□□□□ -1.73
NMD2	YHR077C	YLR419W	Q06698	1435 aa	Known RBP	4.21	□□□□□ -1.74
NMD2	YHR077C	BUD21	Q08492	214 aa	Predicted RBP	4.21	□□□□□ -1.74
NMD2	YHR077C	DIP2	Q12220	943 aa	Predicted RBP	4.2	□□□□□ -1.74
NMD2	YHR077C	RTC1	Q08281	1341 aa		4.2	□□□□□ -1.74
NMD2	YHR077C	HAP1	P0CE41	1502 aa		4.19	□□□□□ -1.74
NMD2	YHR077C	AVT3	P36062	692 aa		4.19	□□□□□ -1.74
NMD2	YHR077C	DRS2	P39524	1355 aa		4.18	□□□□□ -1.74
NMD2	YHR077C	SPT7	P35177	1332 aa		4.18	□□□□□ -1.74
NMD2	YHR077C	POL5	P39985	1022 aa	Known RBP	4.18	□□□□□ -1.74
NMD2	YHR077C	ITT1	Q04638	464 aa		4.17	□□□□□ -1.74
NMD2	YHR077C	DNF3	Q12674	1656 aa		4.16	□□□□□ -1.74
NMD2	YHR077C	MLP1	Q02455	1875 aa	Known RBP	4.16	□□□□□ -1.74
NMD2	YHR077C	BCK1	Q01389	1478 aa		4.16	□□□□□ -1.74
NMD2	YHR077C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.15	□□□□□ -1.75
NMD2	YHR077C	MHP1	P43638	1398 aa		4.14	□□□□□ -1.75
NMD2	YHR077C	NST1	P53935	1240 aa		4.14	□□□□□ -1.75
NMD2	YHR077C	TYS1	P36421	394 aa	Known RBP	4.13	□□□□□ -1.75
NMD2	YHR077C	ENP1	P38333	483 aa	Known RBP	4.12	□□□□□ -1.75
NMD2	YHR077C	YML133C	Q03099	1374 aa		4.12	□□□□□ -1.75
NMD2	YHR077C	YLL067C	Q07888	1374 aa		4.12	□□□□□ -1.75
NMD2	YHR077C	YLL066C	Q99208	1374 aa		4.12	□□□□□ -1.75
NMD2	YHR077C	PRS1	P32895	427 aa	Known RBP	4.12	□□□□□ -1.75
NMD2	YHR077C	SEC3	P33332	1336 aa	Known RBP	4.11	□□□□□ -1.75
NMD2	YHR077C	PSD2	P53037	1138 aa	Known RBP	4.11	□□□□□ -1.75
NMD2	YHR077C	YIL177C	P40434	1758 aa		4.11	□□□□□ -1.75
NMD2	YHR077C	YJL225C	P40889	1758 aa		4.11	□□□□□ -1.75
NMD2	YHR077C	NOP7	P53261	605 aa	Known RBP	4.11	□□□□□ -1.75
NMD2	YHR077C	YAP3	P38749	330 aa		4.1	□□□□□ -1.75
NMD2	YHR077C	RAD9	P14737	1309 aa		4.1	□□□□□ -1.75
NMD2	YHR077C	USO1	P25386	1790 aa		4.1	□□□□□ -1.75
NMD2	YHR077C	IPL1	P38991	367 aa		4.1	□□□□□ -1.75
NMD2	YHR077C	TAF5	P38129	798 aa		4.08	□□□□□ -1.76
NMD2	YHR077C	SNF2	P22082	1703 aa		4.08	□□□□□ -1.76
NMD2	YHR077C	TY4B-H	P0C2J7	1802 aa		4.07	□□□□□ -1.76
NMD2	YHR077C	TY4B-J	P47024	1803 aa		4.07	□□□□□ -1.76
NMD2	YHR077C	ORC1	P54784	914 aa	Predicted RBP	4.06	□□□□□ -1.76
NMD2	YHR077C	PAF1	P38351	445 aa		4.06	□□□□□ -1.76
NMD2	YHR077C	CFT1	Q06632	1357 aa	Known RBP	4.06	□□□□□ -1.76
NMD2	YHR077C	KIP3	P53086	805 aa	Known RBP	4.05	□□□□□ -1.76
NMD2	YHR077C	YEF3	P16521	1044 aa	Known RBP	4.05	□□□□□ -1.76
NMD2	YHR077C	ESL2	P36168	1195 aa		4.05	□□□□□ -1.76
NMD2	YHR077C	NOP2	P40991	618 aa	Known RBP	4.04	□□□□□ -1.76
NMD2	YHR077C	ALD4	P46367	519 aa	Known RBP	4.04	□□□□□ -1.76
NMD2	YHR077C	RRP5	Q05022	1729 aa	Known RBP	4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 27.2 ms