RNA–Protein interactions for RNA: YGL248W

PDE1, Transcript of Low-affinity cyclic AMP phosphodiesterase, yeastyeast

Gene PDE1, Length 1,110 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDE1YGL248W YEL023CP39992 682 aa8.69□□□□□ -1.02
PDE1YGL248W SAP30P38429 201 aa8.68□□□□□ -1.02
PDE1YGL248W MAK11P20484 414 aaKnown RBP8.67□□□□□ -1.02
PDE1YGL248W RAM2P29703 316 aa8.67□□□□□ -1.02
PDE1YGL248W PTC4P38089 393 aa8.67□□□□□ -1.02
PDE1YGL248W MIF2P35201 549 aa8.66□□□□□ -1.02
PDE1YGL248W GRE2Q12068 342 aaKnown RBP8.66□□□□□ -1.02
PDE1YGL248W YDL129WQ07555 291 aa8.65□□□□□ -1.02
PDE1YGL248W PTC3P34221 468 aaKnown RBP8.59□□□□□ -1.03
PDE1YGL248W EDS1P38073 919 aa8.59□□□□□ -1.03
PDE1YGL248W ATH1P48016 1211 aa8.59□□□□□ -1.03
PDE1YGL248W CHL1P22516 861 aaPredicted RBP8.56□□□□□ -1.04
PDE1YGL248W GUT1P32190 709 aa8.56□□□□□ -1.04
PDE1YGL248W COQ8P27697 501 aa8.55□□□□□ -1.04
PDE1YGL248W LEO1P38439 464 aa8.55□□□□□ -1.04
PDE1YGL248W PRE3P38624 215 aa8.54□□□□□ -1.04
PDE1YGL248W DMA1P38823 416 aa8.51□□□□□ -1.05
PDE1YGL248W PML39Q03760 334 aa8.51□□□□□ -1.05
PDE1YGL248W BCK2P33306 851 aa8.5□□□□□ -1.05
PDE1YGL248W NST1P53935 1240 aa8.44□□□□□ -1.06
PDE1YGL248W SOL3P38858 249 aa8.42□□□□□ -1.06
PDE1YGL248W ELP4Q02884 456 aaKnown RBP8.42□□□□□ -1.06
PDE1YGL248W YDR344CQ05510 147 aa8.42□□□□□ -1.06
PDE1YGL248W MID1P41821 548 aa8.4□□□□□ -1.06
PDE1YGL248W NOP53Q12080 455 aaKnown RBP8.4□□□□□ -1.06
PDE1YGL248W AI4P03878 556 aa8.39□□□□□ -1.07
PDE1YGL248W MPH3P0CE00 602 aa8.39□□□□□ -1.07
PDE1YGL248W ARH1P48360 493 aa8.37□□□□□ -1.07
PDE1YGL248W PEX29Q03370 554 aa8.36□□□□□ -1.07
PDE1YGL248W VRP1P37370 817 aa8.35□□□□□ -1.07
PDE1YGL248W ILV3P39522 585 aaKnown RBP8.34□□□□□ -1.07
PDE1YGL248W YGR273CP53329 174 aa8.34□□□□□ -1.07
PDE1YGL248W XDJ1P39102 459 aa8.29□□□□□ -1.08
PDE1YGL248W SPT23P35210 1082 aa8.27□□□□□ -1.09
PDE1YGL248W HAP5Q02516 242 aa8.26□□□□□ -1.09
PDE1YGL248W MPC54Q08550 464 aa8.24□□□□□ -1.09
PDE1YGL248W SLI15P38283 698 aa8.21□□□□□ -1.1
PDE1YGL248W BNI4P53858 892 aa8.21□□□□□ -1.1
PDE1YGL248W SET1P38827 1080 aaKnown RBP8.2□□□□□ -1.1
PDE1YGL248W PTC2P39966 464 aaKnown RBP8.17□□□□□ -1.1
PDE1YGL248W KEX1P09620 729 aa8.16□□□□□ -1.1
PDE1YGL248W NMA111P53920 997 aa8.16□□□□□ -1.1
PDE1YGL248W DPL1Q05567 589 aa8.16□□□□□ -1.1
PDE1YGL248W DPS1P04802 557 aaKnown RBP8.14□□□□□ -1.11
PDE1YGL248W YML082WQ04533 649 aaKnown RBP8.14□□□□□ -1.11
PDE1YGL248W VHR2P40041 505 aa8.09□□□□□ -1.11
PDE1YGL248W YLR326WQ06170 240 aaKnown RBP8.09□□□□□ -1.11
PDE1YGL248W UBP14P38237 781 aaKnown RBP8.07□□□□□ -1.12
PDE1YGL248W CDC73Q06697 393 aa8.06□□□□□ -1.12
PDE1YGL248W ISU2Q12056 156 aa8.06□□□□□ -1.12
PDE1YGL248W RAD54P32863 898 aa8.03□□□□□ -1.12
PDE1YGL248W PCS60P38137 543 aaKnown RBP RIP-Chip data8.02□□□□□ -1.13not detected
PDE1YGL248W IFH1P39520 1085 aa8.01□□□□□ -1.13
PDE1YGL248W YPR015CQ12531 247 aa8.01□□□□□ -1.13
PDE1YGL248W RPP1BP10622 106 aaKnown RBP7.99□□□□□ -1.13
PDE1YGL248W RAM1P22007 431 aa7.99□□□□□ -1.13
PDE1YGL248W AIM44Q99299 758 aa7.99□□□□□ -1.13
PDE1YGL248W PDR1P12383 1068 aa7.94□□□□□ -1.14
PDE1YGL248W KIC1P38692 1080 aa7.94□□□□□ -1.14
PDE1YGL248W GYP1Q08484 637 aa7.94□□□□□ -1.14
PDE1YGL248W YDR090CQ03193 310 aa7.93□□□□□ -1.14
PDE1YGL248W SRC1Q03707 834 aa7.92□□□□□ -1.14
PDE1YGL248W LEU3P08638 886 aa7.91□□□□□ -1.14
PDE1YGL248W YPR148CQ06523 435 aa7.91□□□□□ -1.14
PDE1YGL248W NAP1P25293 417 aaKnown RBP7.89□□□□□ -1.15
PDE1YGL248W REF2P42073 533 aaPredicted RBP7.89□□□□□ -1.15
PDE1YGL248W RAS1P01119 309 aa7.88□□□□□ -1.15
PDE1YGL248W PEX21P50091 288 aa7.87□□□□□ -1.15
PDE1YGL248W SAS4Q04003 481 aa7.87□□□□□ -1.15
PDE1YGL248W URN1Q06525 465 aaKnown RBP7.85□□□□□ -1.15
PDE1YGL248W AMS1P22855 1083 aa7.84□□□□□ -1.15
PDE1YGL248W YRR1Q12172 810 aa7.84□□□□□ -1.15
PDE1YGL248W VPS70P47161 811 aa7.83□□□□□ -1.16
PDE1YGL248W CSC1Q06538 782 aa7.83□□□□□ -1.16
PDE1YGL248W GAP1P19145 602 aaPredicted RBP7.82□□□□□ -1.16
PDE1YGL248W TFB4Q12004 338 aa7.82□□□□□ -1.16
PDE1YGL248W SDH2P21801 266 aa7.8□□□□□ -1.16
PDE1YGL248W TUM1Q08686 304 aaKnown RBP7.79□□□□□ -1.16
PDE1YGL248W ORC6P38826 435 aa7.78□□□□□ -1.16
PDE1YGL248W BUD20Q08004 166 aaPredicted RBP7.78□□□□□ -1.16
PDE1YGL248W MAK21Q12176 1025 aaKnown RBP7.78□□□□□ -1.16
PDE1YGL248W COX6P00427 148 aa7.76□□□□□ -1.17
PDE1YGL248W PRT1P06103 763 aaKnown RBP7.76□□□□□ -1.17
PDE1YGL248W NUD1P32336 851 aa7.76□□□□□ -1.17
PDE1YGL248W STR2P47164 639 aa7.76□□□□□ -1.17
PDE1YGL248W DMA2P53924 522 aa7.76□□□□□ -1.17
PDE1YGL248W YEL077CQ3E7X8 1277 aa7.76□□□□□ -1.17
PDE1YGL248W MRF1P30775 413 aaPredicted RBP7.75□□□□□ -1.17
PDE1YGL248W ISM1P48526 1002 aa7.75□□□□□ -1.17
PDE1YGL248W IOC4Q04213 475 aa7.74□□□□□ -1.17
PDE1YGL248W TRK1P12685 1235 aa7.73□□□□□ -1.17
PDE1YGL248W NPL4P33755 580 aa7.73□□□□□ -1.17
PDE1YGL248W RLF2Q12495 606 aa7.71□□□□□ -1.18
PDE1YGL248W MVP1P40959 511 aaKnown RBP7.69□□□□□ -1.18
PDE1YGL248W ERG12P07277 443 aa7.67□□□□□ -1.18
PDE1YGL248W GCD11P32481 527 aaKnown RBP7.66□□□□□ -1.18
PDE1YGL248W SAS10Q12136 610 aaPredicted RBP7.65□□□□□ -1.18
PDE1YGL248W TY1A-DR4O74302 440 aa7.64□□□□□ -1.19
PDE1YGL248W TY1A-HP0C2I4 478 aaKnown RBP7.64□□□□□ -1.19
PDE1YGL248W TY1A-AP0CX57 440 aa7.64□□□□□ -1.19
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms