RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeastyeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC40YDR364C CST9Q06032 482 aa8.35□□□□□ -1.07
CDC40YDR364C MGA2P40578 1113 aa8.34□□□□□ -1.07
CDC40YDR364C DPS1P04802 557 aaKnown RBP8.33□□□□□ -1.08
CDC40YDR364C SRC1Q03707 834 aa8.32□□□□□ -1.08
CDC40YDR364C PTC4P38089 393 aa8.3□□□□□ -1.08
CDC40YDR364C ABP1P15891 592 aaKnown RBP8.29□□□□□ -1.08
CDC40YDR364C GYP5Q12344 894 aa8.28□□□□□ -1.08
CDC40YDR364C HTA1P04911 132 aaKnown RBP8.26□□□□□ -1.09
CDC40YDR364C HTA2P04912 132 aa8.26□□□□□ -1.09
CDC40YDR364C YEL023CP39992 682 aa8.26□□□□□ -1.09
CDC40YDR364C DCW1P36091 449 aa8.23□□□□□ -1.09
CDC40YDR364C RCR1P38212 213 aa8.2□□□□□ -1.1
CDC40YDR364C ELP4Q02884 456 aaKnown RBP8.15□□□□□ -1.1
CDC40YDR364C PML39Q03760 334 aa8.14□□□□□ -1.11
CDC40YDR364C ARH1P48360 493 aa8.1□□□□□ -1.11
CDC40YDR364C MID1P41821 548 aa8□□□□□ -1.13
CDC40YDR364C NST1P53935 1240 aa8□□□□□ -1.13
CDC40YDR364C GRE2Q12068 342 aaKnown RBP7.98□□□□□ -1.13
CDC40YDR364C SPT23P35210 1082 aa7.97□□□□□ -1.13
CDC40YDR364C MAK11P20484 414 aaKnown RBP7.92□□□□□ -1.14
CDC40YDR364C GUT1P32190 709 aa7.91□□□□□ -1.14
CDC40YDR364C MIF2P35201 549 aa7.9□□□□□ -1.14
CDC40YDR364C RAS1P01119 309 aa7.89□□□□□ -1.15
CDC40YDR364C PTC3P34221 468 aaKnown RBP7.89□□□□□ -1.15
CDC40YDR364C ATH1P48016 1211 aa7.89□□□□□ -1.15
CDC40YDR364C EDS1P38073 919 aa7.88□□□□□ -1.15
CDC40YDR364C YML082WQ04533 649 aaKnown RBP7.88□□□□□ -1.15
CDC40YDR364C RAM2P29703 316 aa7.86□□□□□ -1.15
CDC40YDR364C SOL3P38858 249 aa7.85□□□□□ -1.15
CDC40YDR364C BNI4P53858 892 aa7.85□□□□□ -1.15
CDC40YDR364C HAP5Q02516 242 aa7.85□□□□□ -1.15
CDC40YDR364C PEX29Q03370 554 aa7.83□□□□□ -1.16
CDC40YDR364C ILV3P39522 585 aaKnown RBP7.82□□□□□ -1.16
CDC40YDR364C COQ8P27697 501 aa7.79□□□□□ -1.16
CDC40YDR364C AI4P03878 556 aa7.78□□□□□ -1.16
CDC40YDR364C MPH3P0CE00 602 aa7.78□□□□□ -1.16
CDC40YDR364C PTC2P39966 464 aaKnown RBP7.77□□□□□ -1.17
CDC40YDR364C NOP53Q12080 455 aaKnown RBP7.73□□□□□ -1.17
CDC40YDR364C YPR015CQ12531 247 aa7.72□□□□□ -1.17
CDC40YDR364C YPL062WQ02781 134 aa7.71□□□□□ -1.17
CDC40YDR364C MPC54Q08550 464 aa7.71□□□□□ -1.17
CDC40YDR364C TRK1P12685 1235 aa7.7□□□□□ -1.18
CDC40YDR364C YGR273CP53329 174 aa7.66□□□□□ -1.18
CDC40YDR364C RAM1P22007 431 aa7.65□□□□□ -1.18
CDC40YDR364C NMA111P53920 997 aa7.64□□□□□ -1.19
CDC40YDR364C SDH2P21801 266 aa7.63□□□□□ -1.19
CDC40YDR364C AMS1P22855 1083 aa7.63□□□□□ -1.19
CDC40YDR364C SLI15P38283 698 aa7.58□□□□□ -1.2
CDC40YDR364C DPL1Q05567 589 aa7.56□□□□□ -1.2
CDC40YDR364C ISU2Q12056 156 aa7.49□□□□□ -1.21
CDC40YDR364C KEX1P09620 729 aa7.46□□□□□ -1.21
CDC40YDR364C GYP1Q08484 637 aa7.45□□□□□ -1.22
CDC40YDR364C CDC73Q06697 393 aa7.41□□□□□ -1.22
CDC40YDR364C UBP14P38237 781 aaKnown RBP7.39□□□□□ -1.23
CDC40YDR364C PDR1P12383 1068 aa7.38□□□□□ -1.23
CDC40YDR364C YLR326WQ06170 240 aaKnown RBP7.38□□□□□ -1.23
CDC40YDR364C SAS4Q04003 481 aa7.37□□□□□ -1.23
CDC40YDR364C SET1P38827 1080 aaKnown RBP7.35□□□□□ -1.23
CDC40YDR364C BRE2P43132 505 aa7.33□□□□□ -1.24
CDC40YDR364C YEL077CQ3E7X8 1277 aa7.33□□□□□ -1.24
CDC40YDR364C PCS60P38137 543 aaKnown RBP RIP-Chip data7.32□□□□□ -1.24not detected
CDC40YDR364C GAR1P28007 205 aaKnown RBP7.31□□□□□ -1.24
CDC40YDR364C VHR2P40041 505 aa7.31□□□□□ -1.24
CDC40YDR364C AIR1P40507 360 aaKnown RBP7.3□□□□□ -1.24
CDC40YDR364C RPP1BP10622 106 aaKnown RBP7.29□□□□□ -1.24
CDC40YDR364C RAD54P32863 898 aa7.29□□□□□ -1.24
CDC40YDR364C CLA4P48562 842 aa7.27□□□□□ -1.25
CDC40YDR364C MRF1P30775 413 aaPredicted RBP7.23□□□□□ -1.25
CDC40YDR364C YDR090CQ03193 310 aa7.22□□□□□ -1.25
CDC40YDR364C BUD20Q08004 166 aaPredicted RBP7.22□□□□□ -1.25
CDC40YDR364C PRT1P06103 763 aaKnown RBP7.2□□□□□ -1.26
CDC40YDR364C GAP1P19145 602 aaPredicted RBP7.19□□□□□ -1.26
CDC40YDR364C GBP2P25555 427 aaKnown RBP RIP-Chip data7.19□□□□□ -1.26not detected
CDC40YDR364C CST6P40535 587 aa7.19□□□□□ -1.26
CDC40YDR364C YRR1Q12172 810 aa7.19□□□□□ -1.26
CDC40YDR364C MET22P32179 357 aa7.18□□□□□ -1.26
CDC40YDR364C IFH1P39520 1085 aa7.18□□□□□ -1.26
CDC40YDR364C GCR2Q01722 534 aa7.18□□□□□ -1.26
CDC40YDR364C TFB4Q12004 338 aa7.17□□□□□ -1.26
CDC40YDR364C KIC1P38692 1080 aa7.16□□□□□ -1.26
CDC40YDR364C PEX21P50091 288 aa7.16□□□□□ -1.26
CDC40YDR364C CSC1Q06538 782 aa7.16□□□□□ -1.26
CDC40YDR364C STR2P47164 639 aa7.14□□□□□ -1.27
CDC40YDR364C ISM1P48526 1002 aa7.14□□□□□ -1.27
CDC40YDR364C ERG12P07277 443 aa7.11□□□□□ -1.27
CDC40YDR364C LAM6Q08001 693 aa7.11□□□□□ -1.27
CDC40YDR364C ENV9Q08651 330 aa7.11□□□□□ -1.27
CDC40YDR364C NUD1P32336 851 aa7.1□□□□□ -1.27
CDC40YDR364C REF2P42073 533 aaPredicted RBP7.1□□□□□ -1.27
CDC40YDR364C YDL176WQ12027 708 aa7.1□□□□□ -1.27
CDC40YDR364C TUM1Q08686 304 aaKnown RBP7.09□□□□□ -1.27
CDC40YDR364C YPR148CQ06523 435 aa7.08□□□□□ -1.28
CDC40YDR364C NPL4P33755 580 aa7.06□□□□□ -1.28
CDC40YDR364C ORC6P38826 435 aa7.06□□□□□ -1.28
CDC40YDR364C CDC4P07834 779 aa7.05□□□□□ -1.28
CDC40YDR364C SEC2P17065 759 aa7.04□□□□□ -1.28
CDC40YDR364C TY1A-DR4O74302 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-HP0C2I4 478 aaKnown RBP7.03□□□□□ -1.28
CDC40YDR364C TY1A-AP0CX57 440 aa7.03□□□□□ -1.28
CDC40YDR364C TY1A-PR1P0CX58 440 aa7.03□□□□□ -1.28
Retrieved 100 of 5,963 RNA–protein pairs in 70.3 ms