RNA–Protein interactions for RNA: YDL078C

MDH3, Transcript of Peroxisomal malate dehydrogenase, yeastyeast

Gene MDH3, Length 1,032 nt, Biotype protein coding, Subcellular localisation Peroxisome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MDH3YDL078C TY1B-MR1Q04214 1755 aa9.19□□□□□ -0.94
MDH3YDL078C TY1B-MR2Q04670 1755 aaKnown RBP9.19□□□□□ -0.94
MDH3YDL078C TY1B-LR1Q12088 1755 aaKnown RBP9.19□□□□□ -0.94
MDH3YDL078C TY1B-NL1Q12112 1755 aa9.19□□□□□ -0.94
MDH3YDL078C TY1B-GR1Q12141 1755 aa9.19□□□□□ -0.94
MDH3YDL078C TY1B-BLQ12490 1755 aa9.19□□□□□ -0.94
MDH3YDL078C TSC11P40061 1430 aa9.18□□□□□ -0.94
MDH3YDL078C VTH1P40438 1549 aa9.16□□□□□ -0.94
MDH3YDL078C VTH2P40890 1549 aa9.16□□□□□ -0.94
MDH3YDL078C NUP159P40477 1460 aa9.15□□□□□ -0.94
MDH3YDL078C NTE1Q04958 1679 aa9.14□□□□□ -0.95
MDH3YDL078C YRF1-1P0CX20 1796 aa9.14□□□□□ -0.95
MDH3YDL078C YRF1-5P0CX21 1796 aa9.14□□□□□ -0.95
MDH3YDL078C YRF1-8P0CX22 1796 aa9.14□□□□□ -0.95
MDH3YDL078C MYO4P32492 1471 aa9.14□□□□□ -0.95
MDH3YDL078C GEA2P39993 1459 aaKnown RBP9.14□□□□□ -0.95
MDH3YDL078C RPO21P04050 1733 aaKnown RBP9.11□□□□□ -0.95
MDH3YDL078C BNI1P41832 1953 aa9.1□□□□□ -0.95
MDH3YDL078C VPS15P22219 1454 aa9.08□□□□□ -0.96
MDH3YDL078C ITT1Q04638 464 aa9.07□□□□□ -0.96
MDH3YDL078C STH1P32597 1359 aa9.07□□□□□ -0.96
MDH3YDL078C SNQ2P32568 1501 aaKnown RBP9.05□□□□□ -0.96
MDH3YDL078C SNT2P53127 1403 aa9.03□□□□□ -0.96
MDH3YDL078C DRS2P39524 1355 aa9.02□□□□□ -0.97
MDH3YDL078C MIF2P35201 549 aa9.02□□□□□ -0.97
MDH3YDL078C MET10P39692 1035 aa8.99□□□□□ -0.97
MDH3YDL078C RTT106P40161 455 aa8.98□□□□□ -0.97
MDH3YDL078C MMS1Q06211 1407 aa8.97□□□□□ -0.97
MDH3YDL078C MLP2P40457 1679 aa8.95□□□□□ -0.98
MDH3YDL078C MRPL32P25348 183 aa8.94□□□□□ -0.98
MDH3YDL078C NUP170P38181 1502 aa8.93□□□□□ -0.98
MDH3YDL078C SPO14P36126 1683 aa8.92□□□□□ -0.98
MDH3YDL078C PDR12Q02785 1511 aa8.92□□□□□ -0.98
MDH3YDL078C ABP1P15891 592 aaKnown RBP8.92□□□□□ -0.98
MDH3YDL078C TAF7Q05021 590 aa8.92□□□□□ -0.98
MDH3YDL078C SAS10Q12136 610 aaPredicted RBP8.92□□□□□ -0.98
MDH3YDL078C ULS1Q08562 1619 aa8.91□□□□□ -0.98
MDH3YDL078C PDR15Q04182 1529 aaKnown RBP8.89□□□□□ -0.99
MDH3YDL078C GDB1Q06625 1536 aa8.85□□□□□ -0.99
MDH3YDL078C IRC20Q06554 1556 aa8.85□□□□□ -0.99
MDH3YDL078C NUP157P40064 1391 aaKnown RBP8.84□□□□□ -0.99
MDH3YDL078C IQG1Q12280 1495 aa8.83□□□□□ -1
MDH3YDL078C DNF2Q12675 1612 aa8.83□□□□□ -1
MDH3YDL078C BUD3P25558 1636 aa8.82□□□□□ -1
MDH3YDL078C DOP1Q03921 1698 aa8.81□□□□□ -1
MDH3YDL078C TRM3Q07527 1436 aa8.8□□□□□ -1
MDH3YDL078C IFH1P39520 1085 aa8.8□□□□□ -1
MDH3YDL078C PDR10P51533 1564 aa8.8□□□□□ -1
MDH3YDL078C CAT8P39113 1433 aa8.75□□□□□ -1.01
MDH3YDL078C GEA1P47102 1408 aaPredicted RBP8.75□□□□□ -1.01
MDH3YDL078C SEC7P11075 2009 aaKnown RBP8.7□□□□□ -1.02
MDH3YDL078C YGL015CP33199 130 aa8.7□□□□□ -1.02
MDH3YDL078C YFR006WP43590 535 aa8.7□□□□□ -1.02
MDH3YDL078C YBT1P32386 1661 aa8.69□□□□□ -1.02
MDH3YDL078C TY3B-GQ99315 1547 aa8.69□□□□□ -1.02
MDH3YDL078C CHC1P22137 1653 aaKnown RBP8.69□□□□□ -1.02
MDH3YDL078C ARO1P08566 1588 aaKnown RBP8.67□□□□□ -1.02
MDH3YDL078C REB1P21538 810 aa8.67□□□□□ -1.02
MDH3YDL078C CKB1P43639 278 aa8.65□□□□□ -1.02
MDH3YDL078C RPL17AP05740 184 aaKnown RBP8.64□□□□□ -1.03
MDH3YDL078C RPL17BP46990 184 aaKnown RBP8.64□□□□□ -1.03
MDH3YDL078C YSP2Q06681 1438 aa8.63□□□□□ -1.03
MDH3YDL078C YOR093CQ12275 1648 aa8.61□□□□□ -1.03
MDH3YDL078C BNR1P40450 1375 aa8.61□□□□□ -1.03
MDH3YDL078C YAP3P38749 330 aa8.55□□□□□ -1.04
MDH3YDL078C SRB8P25648 1427 aa8.54□□□□□ -1.04
MDH3YDL078C DNF3Q12674 1656 aa8.54□□□□□ -1.04
MDH3YDL078C URN1Q06525 465 aaKnown RBP8.54□□□□□ -1.04
MDH3YDL078C BUD21Q08492 214 aaPredicted RBP8.48□□□□□ -1.05
MDH3YDL078C MAK10Q02197 733 aa8.44□□□□□ -1.06
MDH3YDL078C IKI3Q06706 1349 aaKnown RBP8.42□□□□□ -1.06
MDH3YDL078C NUP188P52593 1655 aaKnown RBP8.4□□□□□ -1.06
MDH3YDL078C IPL1P38991 367 aa8.4□□□□□ -1.06
MDH3YDL078C HAP1P0CE41 1502 aa8.38□□□□□ -1.07
MDH3YDL078C USO1P25386 1790 aa8.35□□□□□ -1.07
MDH3YDL078C CDC27P38042 758 aa8.35□□□□□ -1.07
MDH3YDL078C TYS1P36421 394 aaKnown RBP8.33□□□□□ -1.08
MDH3YDL078C VMR1P38735 1592 aa8.33□□□□□ -1.08
MDH3YDL078C IML1P47170 1584 aa8.33□□□□□ -1.08
MDH3YDL078C SSM4P40318 1319 aa8.31□□□□□ -1.08
MDH3YDL078C TY1B-NL2Q99337 1749 aaKnown RBP8.3□□□□□ -1.08
MDH3YDL078C YMR196WQ04336 1088 aa8.29□□□□□ -1.08
MDH3YDL078C GCN2P15442 1659 aa8.28□□□□□ -1.08
MDH3YDL078C PDR5P33302 1511 aaKnown RBP8.28□□□□□ -1.08
MDH3YDL078C THI12P42883 340 aa8.22□□□□□ -1.09
MDH3YDL078C THI5P43534 340 aa8.22□□□□□ -1.09
MDH3YDL078C THI11P47183 340 aa8.22□□□□□ -1.09
MDH3YDL078C THI13Q07748 340 aa8.22□□□□□ -1.09
MDH3YDL078C YKR023WP36119 530 aaKnown RBP8.21□□□□□ -1.1
MDH3YDL078C PDR11P40550 1411 aa8.2□□□□□ -1.1
MDH3YDL078C PAF1P38351 445 aa8.18□□□□□ -1.1
MDH3YDL078C UBP10P53874 792 aaPredicted RBP8.18□□□□□ -1.1
MDH3YDL078C SPT21P35209 758 aa8.16□□□□□ -1.1
MDH3YDL078C MAP2P38174 421 aaKnown RBP8.16□□□□□ -1.1
MDH3YDL078C BUD31P25337 157 aaPredicted RBP8.14□□□□□ -1.11
MDH3YDL078C MRX12P47084 519 aa8.14□□□□□ -1.11
MDH3YDL078C RAV1P47104 1357 aa8.13□□□□□ -1.11
MDH3YDL078C KRE5P22023 1365 aa8.12□□□□□ -1.11
MDH3YDL078C CFT1Q06632 1357 aaKnown RBP8.12□□□□□ -1.11
MDH3YDL078C RIA1P53893 1110 aa8.12□□□□□ -1.11
Retrieved 100 of 5,963 RNA–protein pairs in 8.1 ms