RNA–Protein interactions for RNA: YBR221C

PDB1, Transcript of E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, yeastyeast

Gene PDB1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PDB1YBR221C VPS15P22219 1454 aa7.78□□□□□ -1.16
PDB1YBR221C SNU71P53207 620 aaKnown RBP7.77□□□□□ -1.17
PDB1YBR221C YML020WQ03722 664 aa7.76□□□□□ -1.17
PDB1YBR221C RPG1P38249 964 aaKnown RBP7.75□□□□□ -1.17
PDB1YBR221C IRC20Q06554 1556 aa7.75□□□□□ -1.17
PDB1YBR221C SPP41P38904 1435 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-HO13535 1793 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-DR5P0C2I2 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-DR6P0C2I3 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-LR2P0C2I5 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-LR3P0C2I6 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY1B-PR1P0C2I9 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY1B-PR2P0C2J0 1756 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-PR3P0C2J1 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY1B-JR1P47098 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-ML2Q03434 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY1B-ER1Q03612 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-ML1Q04711 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY1B-GR2Q12269 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-OLQ12273 1755 aa7.74□□□□□ -1.17
PDB1YBR221C TY1B-PLQ12414 1755 aaKnown RBP7.74□□□□□ -1.17
PDB1YBR221C TY2B-BQ12491 1770 aa7.71□□□□□ -1.17
PDB1YBR221C NOP8Q08287 484 aaPredicted RBP7.71□□□□□ -1.18
PDB1YBR221C SMC4Q12267 1418 aa7.7□□□□□ -1.18
PDB1YBR221C YRF1-1P0CX20 1796 aa7.7□□□□□ -1.18
PDB1YBR221C YRF1-5P0CX21 1796 aa7.7□□□□□ -1.18
PDB1YBR221C YRF1-8P0CX22 1796 aa7.7□□□□□ -1.18
PDB1YBR221C TSC11P40061 1430 aa7.69□□□□□ -1.18
PDB1YBR221C POL1P13382 1468 aa7.68□□□□□ -1.18
PDB1YBR221C YCK3P39962 524 aa7.68□□□□□ -1.18
PDB1YBR221C TY1B-DR3Q99231 1755 aa7.67□□□□□ -1.18
PDB1YBR221C NOP7P53261 605 aaKnown RBP7.67□□□□□ -1.18
PDB1YBR221C MET10P39692 1035 aa7.66□□□□□ -1.18
PDB1YBR221C BRL1P38770 471 aa7.65□□□□□ -1.18
PDB1YBR221C YOR1P53049 1477 aa7.65□□□□□ -1.18
PDB1YBR221C SNT2P53127 1403 aa7.65□□□□□ -1.18
PDB1YBR221C DNF2Q12675 1612 aa7.64□□□□□ -1.19
PDB1YBR221C HGH1P48362 394 aaKnown RBP7.63□□□□□ -1.19
PDB1YBR221C SLX8P40072 274 aa7.61□□□□□ -1.19
PDB1YBR221C VTH1P40438 1549 aa7.61□□□□□ -1.19
PDB1YBR221C VTH2P40890 1549 aa7.61□□□□□ -1.19
PDB1YBR221C SPB4P25808 606 aaPredicted RBP7.6□□□□□ -1.19
PDB1YBR221C TSR3Q12094 313 aaKnown RBP7.6□□□□□ -1.19
PDB1YBR221C STU1P38198 1513 aa7.6□□□□□ -1.19
PDB1YBR221C NUP170P38181 1502 aa7.59□□□□□ -1.19
PDB1YBR221C MYO4P32492 1471 aa7.59□□□□□ -1.19
PDB1YBR221C TY1B-JR2P47100 1755 aaKnown RBP7.56□□□□□ -1.2
PDB1YBR221C TY1B-ER2Q03619 1755 aa7.56□□□□□ -1.2
PDB1YBR221C TY1B-MR1Q04214 1755 aa7.56□□□□□ -1.2
PDB1YBR221C TY1B-MR2Q04670 1755 aaKnown RBP7.56□□□□□ -1.2
PDB1YBR221C TY1B-LR1Q12088 1755 aaKnown RBP7.56□□□□□ -1.2
PDB1YBR221C TY1B-NL1Q12112 1755 aa7.56□□□□□ -1.2
PDB1YBR221C TY1B-GR1Q12141 1755 aa7.56□□□□□ -1.2
PDB1YBR221C TY1B-BLQ12490 1755 aa7.56□□□□□ -1.2
PDB1YBR221C ARP8Q12386 881 aaKnown RBP RIP-Chip data7.56□□□□□ -1.2not detected
PDB1YBR221C NTE1Q04958 1679 aa7.56□□□□□ -1.2
PDB1YBR221C YOR093CQ12275 1648 aa7.54□□□□□ -1.2
PDB1YBR221C RPO21P04050 1733 aaKnown RBP7.54□□□□□ -1.2
PDB1YBR221C STH1P32597 1359 aa7.52□□□□□ -1.21
PDB1YBR221C RIM101P33400 625 aa7.52□□□□□ -1.21
PDB1YBR221C GEF1P37020 779 aa7.51□□□□□ -1.21
PDB1YBR221C NUG1P40010 520 aaKnown RBP7.51□□□□□ -1.21
PDB1YBR221C RTT106P40161 455 aa7.51□□□□□ -1.21
PDB1YBR221C SUB1P54000 292 aaKnown RBP7.51□□□□□ -1.21
PDB1YBR221C SSA1P10591 642 aaKnown RBP7.5□□□□□ -1.21
PDB1YBR221C TRM3Q07527 1436 aa7.5□□□□□ -1.21
PDB1YBR221C SNQ2P32568 1501 aaKnown RBP7.49□□□□□ -1.21
PDB1YBR221C RPL17AP05740 184 aaKnown RBP7.49□□□□□ -1.21
PDB1YBR221C KIN1P13185 1064 aa7.49□□□□□ -1.21
PDB1YBR221C MNN4P36044 1178 aa7.49□□□□□ -1.21
PDB1YBR221C RPL17BP46990 184 aaKnown RBP7.49□□□□□ -1.21
PDB1YBR221C BRN1P38170 754 aa7.48□□□□□ -1.21
PDB1YBR221C ASF1P32447 279 aa7.47□□□□□ -1.21
PDB1YBR221C VPS72Q03388 795 aa7.47□□□□□ -1.21
PDB1YBR221C PDR12Q02785 1511 aa7.47□□□□□ -1.21
PDB1YBR221C SWE1P32944 819 aa7.46□□□□□ -1.22
PDB1YBR221C IQG1Q12280 1495 aa7.46□□□□□ -1.22
PDB1YBR221C ULS1Q08562 1619 aa7.45□□□□□ -1.22
PDB1YBR221C SPO14P36126 1683 aa7.45□□□□□ -1.22
PDB1YBR221C PDR10P51533 1564 aa7.44□□□□□ -1.22
PDB1YBR221C YTA7P40340 1379 aa7.44□□□□□ -1.22
PDB1YBR221C MRX12P47084 519 aa7.43□□□□□ -1.22
PDB1YBR221C RTS3P53289 263 aa7.43□□□□□ -1.22
PDB1YBR221C NUP157P40064 1391 aaKnown RBP7.43□□□□□ -1.22
PDB1YBR221C SLD2P34252 453 aa7.42□□□□□ -1.22
PDB1YBR221C GIN4Q12263 1142 aa7.42□□□□□ -1.22
PDB1YBR221C FAR11P53917 953 aa7.41□□□□□ -1.22
PDB1YBR221C DOS2P54858 310 aa7.41□□□□□ -1.22
PDB1YBR221C ATG36P46983 293 aa7.4□□□□□ -1.22
PDB1YBR221C YNR021WP53723 404 aaKnown RBP7.4□□□□□ -1.22
PDB1YBR221C GDB1Q06625 1536 aa7.4□□□□□ -1.22
PDB1YBR221C KRI1P42846 591 aaKnown RBP7.39□□□□□ -1.23
PDB1YBR221C MDG1P53885 366 aa7.39□□□□□ -1.23
PDB1YBR221C YAH1Q12184 172 aaKnown RBP7.39□□□□□ -1.23
PDB1YBR221C DOP1Q03921 1698 aa7.38□□□□□ -1.23
PDB1YBR221C PAM1P37304 830 aaKnown RBP7.38□□□□□ -1.23
PDB1YBR221C YAP3P38749 330 aa7.38□□□□□ -1.23
PDB1YBR221C MGA2P40578 1113 aa7.38□□□□□ -1.23
PDB1YBR221C SUB2Q07478 446 aaKnown RBP7.38□□□□□ -1.23
PDB1YBR221C BUD3P25558 1636 aa7.38□□□□□ -1.23
Retrieved 100 of 5,963 RNA–protein pairs in 59 ms