RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 CCER2I3L3R5 266 aa11.72□□□□□ -0.53
VCL-206ENST00000623461 NCLP19338 710 aaKnown RBP11.71□□□□□ -0.53
VCL-206ENST00000623461 SALL2Q9Y467 1007 aaPredicted RBP11.71□□□□□ -0.53
VCL-206ENST00000623461 CEP162Q5TB80 1403 aa11.71□□□□□ -0.53
VCL-206ENST00000623461 CLIP1P30622 1438 aa11.7□□□□□ -0.54
VCL-206ENST00000623461 GOLGA3Q08378 1498 aa11.68□□□□□ -0.54
VCL-206ENST00000623461 P3H3Q8IVL6 736 aa11.66□□□□□ -0.54
VCL-206ENST00000623461 TNIKQ9UKE5 1360 aa11.65□□□□□ -0.54
VCL-206ENST00000623461 PTMAP06454 111 aaKnown RBP11.65□□□□□ -0.55
VCL-206ENST00000623461 CDK11BP21127 795 aaKnown RBP11.64□□□□□ -0.55
VCL-206ENST00000623461 HIRIP3Q9BW71 556 aaPredicted RBP11.64□□□□□ -0.55
VCL-206ENST00000623461 DNTTIP2Q5QJE6 756 aaKnown RBP11.63□□□□□ -0.55
VCL-206ENST00000623461 B4GALNT3Q6L9W6 998 aa11.63□□□□□ -0.55
VCL-206ENST00000623461 TIMELESSQ9UNS1 1208 aa11.63□□□□□ -0.55
VCL-206ENST00000623461 MYH16Q9H6N6 1097 aa11.61□□□□□ -0.55
VCL-206ENST00000623461 RSPH6AQ9H0K4 717 aa11.59□□□□□ -0.55
VCL-206ENST00000623461 USP35Q9P2H5 1018 aa11.59□□□□□ -0.55
VCL-206ENST00000623461 IPO9Q96P70 1041 aaKnown RBP11.58□□□□□ -0.56
VCL-206ENST00000623461 ESF1Q9H501 851 aaKnown RBP11.58□□□□□ -0.56
VCL-206ENST00000623461 MSNP26038 577 aaKnown RBP11.57□□□□□ -0.56
VCL-206ENST00000623461 PTMSP20962 102 aa11.56□□□□□ -0.56
VCL-206ENST00000623461 TCERG1O14776 1098 aaKnown RBP11.56□□□□□ -0.56
VCL-206ENST00000623461 PNNQ9H307 717 aaKnown RBP11.56□□□□□ -0.56
VCL-206ENST00000623461 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.56□□□□□ -0.56
VCL-206ENST00000623461 FANCIQ9NVI1 1328 aa11.55□□□□□ -0.56
VCL-206ENST00000623461 SLC24A1O60721 1099 aa11.55□□□□□ -0.56
VCL-206ENST00000623461 ZNF777Q9ULD5 760 aaPredicted RBP11.54□□□□□ -0.56
VCL-206ENST00000623461 SCRIBQ14160 1630 aa11.54□□□□□ -0.56
VCL-206ENST00000623461 MTUS2Q5JR59 1369 aa11.53□□□□□ -0.56
VCL-206ENST00000623461 CEP164Q9UPV0 1460 aa11.52□□□□□ -0.57
VCL-206ENST00000623461 CHAF1AQ13111 956 aaPredicted RBP11.52□□□□□ -0.57
VCL-206ENST00000623461 CASC1Q6TDU7 716 aa11.52□□□□□ -0.57
VCL-206ENST00000623461 RSF1Q96T23 1441 aaPredicted RBP11.51□□□□□ -0.57
VCL-206ENST00000623461 CHIC2Q9UKJ5 165 aa11.51□□□□□ -0.57
VCL-206ENST00000623461 HSP90AB1P08238 724 aaKnown RBP11.5□□□□□ -0.57
VCL-206ENST00000623461 HSCBQ8IWL3 235 aa11.49□□□□□ -0.57
VCL-206ENST00000623461 RGS3P49796 1198 aa11.49□□□□□ -0.57
VCL-206ENST00000623461 PABPN1Q86U42 306 aaKnown RBP eCLIP11.48□□□□□ -0.57
VCL-206ENST00000623461 MS4A1P11836 297 aa11.48□□□□□ -0.57
VCL-206ENST00000623461 HSP90AA2PQ14568 343 aaPredicted RBP11.48□□□□□ -0.57
VCL-206ENST00000623461 ABCC9O60706 1549 aa11.47□□□□□ -0.57
VCL-206ENST00000623461 CHMP4BQ9H444 224 aaKnown RBP11.46□□□□□ -0.57
VCL-206ENST00000623461 KDM2AQ9Y2K7 1162 aa11.46□□□□□ -0.57
VCL-206ENST00000623461 GOLGA6L6A8MZA4 724 aa11.46□□□□□ -0.58
VCL-206ENST00000623461 CDCA8Q53HL2 280 aa11.46□□□□□ -0.58
VCL-206ENST00000623461 GOLGA6L3A6NEY3 463 aa11.45□□□□□ -0.58
VCL-206ENST00000623461 FTSJ3Q8IY81 847 aaKnown RBP11.44□□□□□ -0.58
VCL-206ENST00000623461 CFAP44Q96MT7 982 aa11.44□□□□□ -0.58
VCL-206ENST00000623461 CCNB3Q8WWL7 1395 aa11.44□□□□□ -0.58
VCL-206ENST00000623461 ARID3CA6NKF2 412 aa11.44□□□□□ -0.58
VCL-206ENST00000623461 GBP4Q96PP9 640 aa11.44□□□□□ -0.58
VCL-206ENST00000623461 SIN3AQ96ST3 1273 aa11.44□□□□□ -0.58
VCL-206ENST00000623461 ZRSR1Q15695 479 aaKnown RBP11.43□□□□□ -0.58
VCL-206ENST00000623461 NRDCO43847 1150 aa11.42□□□□□ -0.58
VCL-206ENST00000623461 GSE1Q14687 1217 aa11.41□□□□□ -0.58
VCL-206ENST00000623461 KNSTRNQ9Y448 316 aa11.41□□□□□ -0.58
VCL-206ENST00000623461 CFAP53Q96M91 514 aa11.41□□□□□ -0.58
VCL-206ENST00000623461 RRP7BPQ9NSQ0 103 aa11.41□□□□□ -0.58
VCL-206ENST00000623461 TSPY4P0CV99 314 aa11.4□□□□□ -0.58
VCL-206ENST00000623461 TSPY10P0CW01 314 aa11.4□□□□□ -0.58
VCL-206ENST00000623461 BAZ1AQ9NRL2 1556 aaPredicted RBP11.4□□□□□ -0.58
VCL-206ENST00000623461 VSIG10Q8N0Z9 540 aa11.39□□□□□ -0.59
VCL-206ENST00000623461 NPM1P06748 294 aaKnown RBP eCLIP11.39□□□□□ -0.59
VCL-206ENST00000623461 SETD5Q9C0A6 1442 aa11.39□□□□□ -0.59
VCL-206ENST00000623461 CARD11Q9BXL7 1154 aa11.39□□□□□ -0.59
VCL-206ENST00000623461 NUDCQ9Y266 331 aa11.38□□□□□ -0.59
VCL-206ENST00000623461 KIAA2012Q0VF49 1180 aa11.38□□□□□ -0.59
VCL-206ENST00000623461 RCAN3Q9UKA8 241 aa11.37□□□□□ -0.59
VCL-206ENST00000623461 PLCB2Q00722 1185 aa11.37□□□□□ -0.59
VCL-206ENST00000623461 WRNQ14191 1432 aaPredicted RBP eCLIP11.37□□□□□ -0.59
VCL-206ENST00000623461 VPS8Q8N3P4 1428 aa11.35□□□□□ -0.59
VCL-206ENST00000623461 ARID4BQ4LE39 1312 aaPredicted RBP11.35□□□□□ -0.59
VCL-206ENST00000623461 CHGAP10645 457 aaKnown RBP11.34□□□□□ -0.59
VCL-206ENST00000623461 HSPA5P11021 654 aaKnown RBP11.34□□□□□ -0.59
VCL-206ENST00000623461 FRAT1Q92837 279 aaPredicted RBP11.33□□□□□ -0.6
VCL-206ENST00000623461 FBLN2P98095 1184 aa11.33□□□□□ -0.6
VCL-206ENST00000623461 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.32□□□□□ -0.6
VCL-206ENST00000623461 STAG3Q9UJ98 1225 aa11.32□□□□□ -0.6
VCL-206ENST00000623461 SYAP1Q96A49 352 aaPredicted RBP11.32□□□□□ -0.6
VCL-206ENST00000623461 GZF1Q9H116 711 aaPredicted RBP11.32□□□□□ -0.6
VCL-206ENST00000623461 PDE3BQ13370 1112 aa11.32□□□□□ -0.6
VCL-206ENST00000623461 SENP3-EIF4A1A0A087X0R7 540 aa11.31□□□□□ -0.6
VCL-206ENST00000623461 TNNT3P45378 269 aaPredicted RBP11.31□□□□□ -0.6
VCL-206ENST00000623461 DDX11L8A8MPP1 907 aa11.31□□□□□ -0.6
VCL-206ENST00000623461 RALBP1Q15311 655 aa11.31□□□□□ -0.6
VCL-206ENST00000623461 SLKQ9H2G2 1235 aaPredicted RBP11.3□□□□□ -0.6
VCL-206ENST00000623461 FHAD1B1AJZ9 1412 aa11.3□□□□□ -0.6
VCL-206ENST00000623461 SPRYD3Q8NCJ5 442 aa11.3□□□□□ -0.6
VCL-206ENST00000623461 MCCP23508 829 aa11.3□□□□□ -0.6
VCL-206ENST00000623461 KIF27Q86VH2 1401 aa11.29□□□□□ -0.6
VCL-206ENST00000623461 PMFBP1Q8TBY8 1022 aa11.29□□□□□ -0.6
VCL-206ENST00000623461 PDE4AP27815 886 aa11.29□□□□□ -0.6
VCL-206ENST00000623461 DRC7Q8IY82 874 aa11.28□□□□□ -0.6
VCL-206ENST00000623461 RWDD1Q9H446 243 aaPredicted RBP11.28□□□□□ -0.6
VCL-206ENST00000623461 KTN1Q86UP2 1357 aaKnown RBP11.28□□□□□ -0.6
VCL-206ENST00000623461 MAPK8IP3Q9UPT6 1336 aa11.28□□□□□ -0.6
VCL-206ENST00000623461 GOLGA6L4A6NEF3 574 aa11.28□□□□□ -0.6
VCL-206ENST00000623461 PPP1R15AO75807 674 aaPredicted RBP11.27□□□□□ -0.6
VCL-206ENST00000623461 SKOR2Q2VWA4 1001 aaPredicted RBP11.27□□□□□ -0.61
VCL-206ENST00000623461 PRKCSHP14314 528 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms