RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 VSIG10Q8N0Z9 540 aa19.73■□□□□ 0.75
COL5A1-208ENST00000618395 MYH16Q9H6N6 1097 aa19.66■□□□□ 0.74
COL5A1-208ENST00000618395 CSRNP3Q8WYN3 585 aa19.65■□□□□ 0.74
COL5A1-208ENST00000618395 DDX10Q13206 875 aaKnown RBP19.64■□□□□ 0.73
COL5A1-208ENST00000618395 TMC1Q8TDI8 760 aa19.63■□□□□ 0.73
COL5A1-208ENST00000618395 ARID3AQ99856 593 aa19.63■□□□□ 0.73
COL5A1-208ENST00000618395 PLCB2Q00722 1185 aa19.62■□□□□ 0.73
COL5A1-208ENST00000618395 PODXL2Q9NZ53 605 aa19.62■□□□□ 0.73
COL5A1-208ENST00000618395 MIER1Q8N108 512 aa19.6■□□□□ 0.73
COL5A1-208ENST00000618395 SALL2Q9Y467 1007 aaPredicted RBP19.57■□□□□ 0.72
COL5A1-208ENST00000618395 SETQ01105 290 aaPredicted RBP19.57■□□□□ 0.72
COL5A1-208ENST00000618395 APPP05067 770 aa19.57■□□□□ 0.72
COL5A1-208ENST00000618395 PKNOX2Q96KN3 472 aa19.54■□□□□ 0.72
COL5A1-208ENST00000618395 TONSLQ96HA7 1378 aa19.52■□□□□ 0.72
COL5A1-208ENST00000618395 CASC1Q6TDU7 716 aa19.52■□□□□ 0.72
COL5A1-208ENST00000618395 A0A0U1RQG5 324 aaPredicted RBP19.52■□□□□ 0.72
COL5A1-208ENST00000618395 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.71
COL5A1-208ENST00000618395 KIAA2012Q0VF49 1180 aa19.51■□□□□ 0.71
COL5A1-208ENST00000618395 SUPT16HQ9Y5B9 1047 aaKnown RBP19.5■□□□□ 0.71
COL5A1-208ENST00000618395 MRS2Q9HD23 443 aa19.49■□□□□ 0.71
COL5A1-208ENST00000618395 RBM19Q9Y4C8 960 aaKnown RBP19.49■□□□□ 0.71
COL5A1-208ENST00000618395 GOLGA6L1Q8N7Z2 621 aa19.48■□□□□ 0.71
COL5A1-208ENST00000618395 PPP4R2Q9NY27 417 aa19.47■□□□□ 0.71
COL5A1-208ENST00000618395 DRC7Q8IY82 874 aa19.46■□□□□ 0.71
COL5A1-208ENST00000618395 HSP90AB1P08238 724 aaKnown RBP19.46■□□□□ 0.71
COL5A1-208ENST00000618395 WDR43Q15061 677 aaKnown RBP eCLIP19.45■□□□□ 0.7
COL5A1-208ENST00000618395 TPRNQ4KMQ1 711 aa19.44■□□□□ 0.7
COL5A1-208ENST00000618395 PRKCSHP14314 528 aaPredicted RBP19.42■□□□□ 0.7
COL5A1-208ENST00000618395 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
COL5A1-208ENST00000618395 USP35Q9P2H5 1018 aa19.4■□□□□ 0.7
COL5A1-208ENST00000618395 HSCBQ8IWL3 235 aa19.35■□□□□ 0.69
COL5A1-208ENST00000618395 GOLGA6L3A6NEY3 463 aa19.33■□□□□ 0.69
COL5A1-208ENST00000618395 ZNF771Q7L3S4 317 aaPredicted RBP19.33■□□□□ 0.68
COL5A1-208ENST00000618395 NOC3LQ8WTT2 800 aaKnown RBP19.29■□□□□ 0.68
COL5A1-208ENST00000618395 TIMELESSQ9UNS1 1208 aa19.29■□□□□ 0.68
COL5A1-208ENST00000618395 GOLGA6L4A6NEF3 574 aa19.28■□□□□ 0.68
COL5A1-208ENST00000618395 GBP4Q96PP9 640 aa19.27■□□□□ 0.68
COL5A1-208ENST00000618395 ZBTB7CA1YPR0 619 aa19.27■□□□□ 0.67
COL5A1-208ENST00000618395 GZF1Q9H116 711 aaPredicted RBP19.23■□□□□ 0.67
COL5A1-208ENST00000618395 SYAP1Q96A49 352 aaPredicted RBP19.21■□□□□ 0.67
COL5A1-208ENST00000618395 RGS3P49796 1198 aa19.2■□□□□ 0.66
COL5A1-208ENST00000618395 FTSJ3Q8IY81 847 aaKnown RBP19.19■□□□□ 0.66
COL5A1-208ENST00000618395 NOM1Q5C9Z4 860 aaKnown RBP19.19■□□□□ 0.66
COL5A1-208ENST00000618395 B4GALNT3Q6L9W6 998 aa19.19■□□□□ 0.66
COL5A1-208ENST00000618395 HTATSF1O43719 755 aaKnown RBP19.18■□□□□ 0.66
COL5A1-208ENST00000618395 TEX35Q5T0J7 233 aa19.14■□□□□ 0.65
COL5A1-208ENST00000618395 IPO9Q96P70 1041 aaKnown RBP19.13■□□□□ 0.65
COL5A1-208ENST00000618395 GPS2Q13227 327 aa19.11■□□□□ 0.65
COL5A1-208ENST00000618395 MTERF4Q7Z6M4 381 aaKnown RBP19.1■□□□□ 0.65
COL5A1-208ENST00000618395 SPRYD3Q8NCJ5 442 aa19.1■□□□□ 0.65
COL5A1-208ENST00000618395 TSHZ2Q9NRE2 1034 aa19.08■□□□□ 0.65
COL5A1-208ENST00000618395 MAP7D2Q96T17 732 aa19.07■□□□□ 0.64
COL5A1-208ENST00000618395 CFAP44Q96MT7 982 aa19.07■□□□□ 0.64
COL5A1-208ENST00000618395 TULP1O00294 542 aaPredicted RBP19.07■□□□□ 0.64
COL5A1-208ENST00000618395 PHF14O94880 888 aa19.06■□□□□ 0.64
COL5A1-208ENST00000618395 GSE1Q14687 1217 aa19.06■□□□□ 0.64
COL5A1-208ENST00000618395 FAM13BQ9NYF5 915 aa19.05■□□□□ 0.64
COL5A1-208ENST00000618395 FGD1P98174 961 aa19.04■□□□□ 0.64
COL5A1-208ENST00000618395 CHMP4BQ9H444 224 aaKnown RBP19.04■□□□□ 0.64
COL5A1-208ENST00000618395 MCCP23508 829 aa19.03■□□□□ 0.64
COL5A1-208ENST00000618395 TPM4P67936 248 aa19.03■□□□□ 0.64
COL5A1-208ENST00000618395 CCDC66A2RUB6 948 aa19.02■□□□□ 0.64
COL5A1-208ENST00000618395 EIF4G2P78344 907 aaKnown RBP eCLIP19■□□□□ 0.63
COL5A1-208ENST00000618395 SLKQ9H2G2 1235 aaPredicted RBP18.99■□□□□ 0.63
COL5A1-208ENST00000618395 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.99■□□□□ 0.63
COL5A1-208ENST00000618395 CALD1Q05682 793 aaKnown RBP18.97■□□□□ 0.63
COL5A1-208ENST00000618395 CWC15Q9P013 229 aaKnown RBP18.97■□□□□ 0.63
COL5A1-208ENST00000618395 MS4A1P11836 297 aa18.96■□□□□ 0.63
COL5A1-208ENST00000618395 CSPP1Q1MSJ5 1256 aa18.96■□□□□ 0.63
COL5A1-208ENST00000618395 RRP12Q5JTH9 1297 aaKnown RBP18.96■□□□□ 0.63
COL5A1-208ENST00000618395 KCNJ4P48050 445 aa18.96■□□□□ 0.63
COL5A1-208ENST00000618395 TCERG1O14776 1098 aaKnown RBP18.95■□□□□ 0.62
COL5A1-208ENST00000618395 DDX11L8A8MPP1 907 aa18.94■□□□□ 0.62
COL5A1-208ENST00000618395 ESF1Q9H501 851 aaKnown RBP18.94■□□□□ 0.62
COL5A1-208ENST00000618395 ANO8Q9HCE9 1232 aaPredicted RBP18.94■□□□□ 0.62
COL5A1-208ENST00000618395 STK11IPQ8N1F8 1099 aa18.94■□□□□ 0.62
COL5A1-208ENST00000618395 PATL2C9JE40 543 aaKnown RBP18.93■□□□□ 0.62
COL5A1-208ENST00000618395 RDXP35241 583 aaKnown RBP18.92■□□□□ 0.62
COL5A1-208ENST00000618395 HIRIP3Q9BW71 556 aaPredicted RBP18.9■□□□□ 0.62
COL5A1-208ENST00000618395 NAP1L2Q9ULW6 460 aaPredicted RBP18.9■□□□□ 0.62
COL5A1-208ENST00000618395 STAG3Q9UJ98 1225 aa18.9■□□□□ 0.62
COL5A1-208ENST00000618395 FAM43AQ8N2R8 423 aa18.89■□□□□ 0.61
COL5A1-208ENST00000618395 TAF7LQ5H9L4 462 aa18.89■□□□□ 0.61
COL5A1-208ENST00000618395 FBLN2P98095 1184 aa18.87■□□□□ 0.61
COL5A1-208ENST00000618395 TAF3Q5VWG9 929 aa18.87■□□□□ 0.61
COL5A1-208ENST00000618395 TAOK2Q9UL54 1235 aa18.87■□□□□ 0.61
COL5A1-208ENST00000618395 CCDC70Q6NSX1 233 aa18.86■□□□□ 0.61
COL5A1-208ENST00000618395 TPM3P06753 285 aa18.86■□□□□ 0.61
COL5A1-208ENST00000618395 TPM2P07951 284 aa18.85■□□□□ 0.61
COL5A1-208ENST00000618395 GNL2Q13823 731 aaKnown RBP18.83■□□□□ 0.61
COL5A1-208ENST00000618395 ZNF777Q9ULD5 760 aaPredicted RBP18.83■□□□□ 0.61
COL5A1-208ENST00000618395 FRAT1Q92837 279 aaPredicted RBP18.83■□□□□ 0.6
COL5A1-208ENST00000618395 PDE4CQ08493 712 aa18.83■□□□□ 0.6
COL5A1-208ENST00000618395 SKOR2Q2VWA4 1001 aaPredicted RBP18.82■□□□□ 0.6
COL5A1-208ENST00000618395 CCDC191Q8NCU4 936 aa18.82■□□□□ 0.6
COL5A1-208ENST00000618395 RRP9O43818 475 aaKnown RBP18.8■□□□□ 0.6
COL5A1-208ENST00000618395 CCAR2Q8N163 923 aaKnown RBP18.8■□□□□ 0.6
COL5A1-208ENST00000618395 CCDC34Q96HJ3 373 aa18.79■□□□□ 0.6
COL5A1-208ENST00000618395 HMMRO75330 724 aa18.79■□□□□ 0.6
COL5A1-208ENST00000618395 FANCIQ9NVI1 1328 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms