RNA–Protein interactions for RNA: ENST00000615671.1

GABPB1-212, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

Gene GABPB1, Length 6,266 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-212ENST00000615671 TPRNQ4KMQ1 711 aa25.01■■□□□ 1.59
GABPB1-212ENST00000615671 TSPY4P0CV99 314 aa25■■□□□ 1.59
GABPB1-212ENST00000615671 TSPY10P0CW01 314 aa25■■□□□ 1.59
GABPB1-212ENST00000615671 CDK11BP21127 795 aaKnown RBP25■■□□□ 1.59
GABPB1-212ENST00000615671 CCDC136Q96JN2 1154 aa25■■□□□ 1.59
GABPB1-212ENST00000615671 MYH16Q9H6N6 1097 aa24.97■■□□□ 1.59
GABPB1-212ENST00000615671 TAOK2Q9UL54 1235 aa24.97■■□□□ 1.59
GABPB1-212ENST00000615671 PPM1GO15355 546 aaPredicted RBP24.96■■□□□ 1.59
GABPB1-212ENST00000615671 MRS2Q9HD23 443 aa24.93■■□□□ 1.58
GABPB1-212ENST00000615671 RRP7BPQ9NSQ0 103 aa24.93■■□□□ 1.58
GABPB1-212ENST00000615671 LMOD2Q6P5Q4 547 aa24.92■■□□□ 1.58
GABPB1-212ENST00000615671 RGL3Q3MIN7 710 aa24.91■■□□□ 1.58
GABPB1-212ENST00000615671 MTUS2Q5JR59 1369 aa24.83■■□□□ 1.57
GABPB1-212ENST00000615671 NPHP1O15259 732 aa24.83■■□□□ 1.56
GABPB1-212ENST00000615671 LAS1LQ9Y4W2 734 aaKnown RBP24.81■■□□□ 1.56
GABPB1-212ENST00000615671 NEUROD2Q15784 382 aa24.71■■□□□ 1.55
GABPB1-212ENST00000615671 NCLP19338 710 aaKnown RBP24.69■■□□□ 1.54
GABPB1-212ENST00000615671 TNNT2P45379 298 aaPredicted RBP24.68■■□□□ 1.54
GABPB1-212ENST00000615671 TRHP20396 242 aaPredicted RBP24.66■■□□□ 1.54
GABPB1-212ENST00000615671 NCBP3Q53F19 620 aaKnown RBP24.63■■□□□ 1.53
GABPB1-212ENST00000615671 SOX12O15370 315 aa24.6■■□□□ 1.53
GABPB1-212ENST00000615671 PLEKHD1A6NEE1 506 aa24.59■■□□□ 1.53
GABPB1-212ENST00000615671 MLECQ14165 292 aa24.58■■□□□ 1.53
GABPB1-212ENST00000615671 EIF4G2P78344 907 aaKnown RBP eCLIP24.58■■□□□ 1.53
GABPB1-212ENST00000615671 POGKQ9P215 609 aa24.55■■□□□ 1.52
GABPB1-212ENST00000615671 FTSJ3Q8IY81 847 aaKnown RBP24.54■■□□□ 1.52
GABPB1-212ENST00000615671 CFAP53Q96M91 514 aa24.53■■□□□ 1.52
GABPB1-212ENST00000615671 MIER1Q8N108 512 aa24.51■■□□□ 1.51
GABPB1-212ENST00000615671 ZRSR1Q15695 479 aaKnown RBP24.51■■□□□ 1.51
GABPB1-212ENST00000615671 KNSTRNQ9Y448 316 aa24.5■■□□□ 1.51
GABPB1-212ENST00000615671 NAP1L2Q9ULW6 460 aaPredicted RBP24.5■■□□□ 1.51
GABPB1-212ENST00000615671 OS9Q13438 667 aaPredicted RBP24.47■■□□□ 1.51
GABPB1-212ENST00000615671 CASC1Q6TDU7 716 aa24.45■■□□□ 1.5
GABPB1-212ENST00000615671 MAPK8IP3Q9UPT6 1336 aa24.45■■□□□ 1.5
GABPB1-212ENST00000615671 CC2D1BQ5T0F9 858 aaKnown RBP24.44■■□□□ 1.5
GABPB1-212ENST00000615671 BECN1Q14457 450 aa24.44■■□□□ 1.5
GABPB1-212ENST00000615671 FRAT1Q92837 279 aaPredicted RBP24.44■■□□□ 1.5
GABPB1-212ENST00000615671 CARD11Q9BXL7 1154 aa24.43■■□□□ 1.5
GABPB1-212ENST00000615671 CFDP1Q9UEE9 299 aaPredicted RBP24.43■■□□□ 1.5
GABPB1-212ENST00000615671 U2SURPO15042 1029 aaKnown RBP24.42■■□□□ 1.5
GABPB1-212ENST00000615671 PTMAP06454 111 aaKnown RBP24.42■■□□□ 1.5
GABPB1-212ENST00000615671 CLSTN1O94985 981 aa24.42■■□□□ 1.5
GABPB1-212ENST00000615671 TRIM44Q96DX7 344 aaPredicted RBP24.42■■□□□ 1.5
GABPB1-212ENST00000615671 GOLGA2Q08379 1002 aa24.41■■□□□ 1.5
GABPB1-212ENST00000615671 ZCCHC6Q5VYS8 1495 aaKnown RBP24.4■■□□□ 1.5
GABPB1-212ENST00000615671 SAFB2Q14151 953 aaKnown RBP eCLIP24.4■■□□□ 1.5
GABPB1-212ENST00000615671 PLCB2Q00722 1185 aa24.39■■□□□ 1.5
GABPB1-212ENST00000615671 GLIPR1L2Q4G1C9 344 aa24.38■■□□□ 1.49
GABPB1-212ENST00000615671 ISY1Q9ULR0 285 aaKnown RBP24.38■■□□□ 1.49
GABPB1-212ENST00000615671 GOLGA6L22H0YM25 854 aa24.37■■□□□ 1.49
GABPB1-212ENST00000615671 CLIP1P30622 1438 aa24.36■■□□□ 1.49
GABPB1-212ENST00000615671 FGD1P98174 961 aa24.34■■□□□ 1.49
GABPB1-212ENST00000615671 RGS3P49796 1198 aa24.33■■□□□ 1.49
GABPB1-212ENST00000615671 ERCC6Q03468 1493 aa24.33■■□□□ 1.49
GABPB1-212ENST00000615671 DNTTIP2Q5QJE6 756 aaKnown RBP24.33■■□□□ 1.49
GABPB1-212ENST00000615671 DDRGK1Q96HY6 314 aa24.31■■□□□ 1.48
GABPB1-212ENST00000615671 KCNJ4P48050 445 aa24.29■■□□□ 1.48
GABPB1-212ENST00000615671 NUDCQ9Y266 331 aa24.27■■□□□ 1.48
GABPB1-212ENST00000615671 RSF1Q96T23 1441 aaPredicted RBP24.26■■□□□ 1.47
GABPB1-212ENST00000615671 SUPT16HQ9Y5B9 1047 aaKnown RBP24.26■■□□□ 1.47
GABPB1-212ENST00000615671 CDCA8Q53HL2 280 aa24.26■■□□□ 1.47
GABPB1-212ENST00000615671 ZNF330Q9Y3S2 320 aaPredicted RBP24.25■■□□□ 1.47
GABPB1-212ENST00000615671 AMER1Q5JTC6 1135 aaPredicted RBP24.25■■□□□ 1.47
GABPB1-212ENST00000615671 SRPK2P78362 688 aaKnown RBP24.22■■□□□ 1.47
GABPB1-212ENST00000615671 STK26Q9P289 416 aa24.21■■□□□ 1.47
GABPB1-212ENST00000615671 PAK3O75914 559 aaPredicted RBP24.2■■□□□ 1.46
GABPB1-212ENST00000615671 SIN3AQ96ST3 1273 aa24.19■■□□□ 1.46
GABPB1-212ENST00000615671 HSP90AB1P08238 724 aaKnown RBP24.17■■□□□ 1.46
GABPB1-212ENST00000615671 SPRYD3Q8NCJ5 442 aa24.16■■□□□ 1.46
GABPB1-212ENST00000615671 APBB1O00213 710 aa24.15■■□□□ 1.46
GABPB1-212ENST00000615671 EIF4G1Q04637 1599 aaKnown RBP24.14■■□□□ 1.46
GABPB1-212ENST00000615671 CCDC9Q9Y3X0 531 aaKnown RBP24.14■■□□□ 1.46
GABPB1-212ENST00000615671 DCAF11Q8TEB1 546 aa24.11■■□□□ 1.45
GABPB1-212ENST00000615671 GGT6Q6P531 493 aa24.1■■□□□ 1.45
GABPB1-212ENST00000615671 RTN4Q9NQC3 1192 aaKnown RBP24.1■■□□□ 1.45
GABPB1-212ENST00000615671 CSB-PGBD3P0DP91 1061 aa24.09■■□□□ 1.45
GABPB1-212ENST00000615671 DCAF1Q9Y4B6 1507 aa24.07■■□□□ 1.44
GABPB1-212ENST00000615671 RTF1Q92541 710 aaKnown RBP24.02■■□□□ 1.44
GABPB1-212ENST00000615671 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.02■■□□□ 1.44
GABPB1-212ENST00000615671 CEP162Q5TB80 1403 aa24.02■■□□□ 1.44
GABPB1-212ENST00000615671 GOLGA3Q08378 1498 aa24.02■■□□□ 1.44
GABPB1-212ENST00000615671 MORC1Q86VD1 984 aa24■■□□□ 1.43
GABPB1-212ENST00000615671 NAP1L5Q96NT1 182 aaPredicted RBP24■■□□□ 1.43
GABPB1-212ENST00000615671 KANK1Q14678 1352 aa23.99■■□□□ 1.43
GABPB1-212ENST00000615671 GOLGA6L4A6NEF3 574 aa23.99■■□□□ 1.43
GABPB1-212ENST00000615671 ANP32EQ9BTT0 268 aa23.98■■□□□ 1.43
GABPB1-212ENST00000615671 GOLGA6L6A8MZA4 724 aa23.98■■□□□ 1.43
GABPB1-212ENST00000615671 TMF1P82094 1093 aa23.97■■□□□ 1.43
GABPB1-212ENST00000615671 CCNB3Q8WWL7 1395 aa23.97■■□□□ 1.43
GABPB1-212ENST00000615671 GNL2Q13823 731 aaKnown RBP23.97■■□□□ 1.43
GABPB1-212ENST00000615671 PNNQ9H307 717 aaKnown RBP23.96■■□□□ 1.43
GABPB1-212ENST00000615671 NUTM2DQ5VT03 806 aaPredicted RBP23.95■■□□□ 1.42
GABPB1-212ENST00000615671 B4GALNT3Q6L9W6 998 aa23.95■■□□□ 1.42
GABPB1-212ENST00000615671 BAZ1BQ9UIG0 1483 aaKnown RBP23.95■■□□□ 1.42
GABPB1-212ENST00000615671 HDGFP51858 240 aaKnown RBP23.94■■□□□ 1.42
GABPB1-212ENST00000615671 FOXD1Q16676 465 aa23.93■■□□□ 1.42
GABPB1-212ENST00000615671 ERICH6BQ5W0A0 696 aa23.92■■□□□ 1.42
GABPB1-212ENST00000615671 CHMP3Q9Y3E7 222 aa23.92■■□□□ 1.42
GABPB1-212ENST00000615671 DRC7Q8IY82 874 aa23.91■■□□□ 1.42
GABPB1-212ENST00000615671 PDE4CQ08493 712 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms