RNA–Protein interactions for RNA: ENST00000613421.4

GGA3-220, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 5,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-220ENST00000613421 CHGAP10645 457 aaKnown RBP18.65■□□□□ 0.58
GGA3-220ENST00000613421 KDM2AQ9Y2K7 1162 aa18.64■□□□□ 0.58
GGA3-220ENST00000613421 VPS8Q8N3P4 1428 aa18.63■□□□□ 0.57
GGA3-220ENST00000613421 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
GGA3-220ENST00000613421 CCNB3Q8WWL7 1395 aa18.62■□□□□ 0.57
GGA3-220ENST00000613421 CUX2O14529 1486 aa18.61■□□□□ 0.57
GGA3-220ENST00000613421 NPM2Q86SE8 214 aaKnown RBP18.6■□□□□ 0.57
GGA3-220ENST00000613421 FHAD1B1AJZ9 1412 aa18.6■□□□□ 0.57
GGA3-220ENST00000613421 SALL2Q9Y467 1007 aaPredicted RBP18.59■□□□□ 0.57
GGA3-220ENST00000613421 CARMIL1Q5VZK9 1371 aa18.59■□□□□ 0.57
GGA3-220ENST00000613421 NPM1P06748 294 aaKnown RBP eCLIP18.59■□□□□ 0.57
GGA3-220ENST00000613421 SMARCA2P51531 1590 aa18.58■□□□□ 0.57
GGA3-220ENST00000613421 PLEKHD1A6NEE1 506 aa18.56■□□□□ 0.56
GGA3-220ENST00000613421 CCDC136Q96JN2 1154 aa18.55■□□□□ 0.56
GGA3-220ENST00000613421 SIN3AQ96ST3 1273 aa18.54■□□□□ 0.56
GGA3-220ENST00000613421 CFDP1Q9UEE9 299 aaPredicted RBP18.52■□□□□ 0.56
GGA3-220ENST00000613421 BCL11AQ9H165 835 aa18.51■□□□□ 0.55
GGA3-220ENST00000613421 IRX6P78412 446 aaPredicted RBP18.51■□□□□ 0.55
GGA3-220ENST00000613421 STAG3Q9UJ98 1225 aa18.5■□□□□ 0.55
GGA3-220ENST00000613421 WDR43Q15061 677 aaKnown RBP eCLIP18.49■□□□□ 0.55
GGA3-220ENST00000613421 SLC24A1O60721 1099 aa18.48■□□□□ 0.55
GGA3-220ENST00000613421 ESF1Q9H501 851 aaKnown RBP18.48■□□□□ 0.55
GGA3-220ENST00000613421 KANK4Q5T7N3 995 aaPredicted RBP18.45■□□□□ 0.54
GGA3-220ENST00000613421 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.44■□□□□ 0.54
GGA3-220ENST00000613421 KCNH8Q96L42 1107 aa18.43■□□□□ 0.54
GGA3-220ENST00000613421 SETD5Q9C0A6 1442 aa18.42■□□□□ 0.54
GGA3-220ENST00000613421 SMARCA4P51532 1647 aa18.41■□□□□ 0.54
GGA3-220ENST00000613421 TIMELESSQ9UNS1 1208 aa18.41■□□□□ 0.54
GGA3-220ENST00000613421 EIF4G1Q04637 1599 aaKnown RBP18.41■□□□□ 0.54
GGA3-220ENST00000613421 ARHGAP35Q9NRY4 1499 aa18.39■□□□□ 0.53
GGA3-220ENST00000613421 RGL3Q3MIN7 710 aa18.39■□□□□ 0.53
GGA3-220ENST00000613421 CARD11Q9BXL7 1154 aa18.36■□□□□ 0.53
GGA3-220ENST00000613421 UPF2Q9HAU5 1272 aaKnown RBP18.36■□□□□ 0.53
GGA3-220ENST00000613421 ERCC6Q03468 1493 aa18.34■□□□□ 0.53
GGA3-220ENST00000613421 SUPT16HQ9Y5B9 1047 aaKnown RBP18.33■□□□□ 0.52
GGA3-220ENST00000613421 ATAD2BQ9ULI0 1458 aa18.32■□□□□ 0.52
GGA3-220ENST00000613421 RAPGEF2Q9Y4G8 1499 aa18.31■□□□□ 0.52
GGA3-220ENST00000613421 RAB3GAP2Q9H2M9 1393 aa18.3■□□□□ 0.52
GGA3-220ENST00000613421 FMN1Q68DA7 1419 aa18.28■□□□□ 0.52
GGA3-220ENST00000613421 RUSC2Q8N2Y8 1516 aa18.27■□□□□ 0.52
GGA3-220ENST00000613421 CDCA8Q53HL2 280 aa18.26■□□□□ 0.51
GGA3-220ENST00000613421 NBR1Q14596 966 aa18.25■□□□□ 0.51
GGA3-220ENST00000613421 SENP3-EIF4A1A0A087X0R7 540 aa18.24■□□□□ 0.51
GGA3-220ENST00000613421 HSP90AA1P07900 732 aaKnown RBP18.24■□□□□ 0.51
GGA3-220ENST00000613421 KNSTRNQ9Y448 316 aa18.24■□□□□ 0.51
GGA3-220ENST00000613421 PDS5BQ9NTI5 1447 aa18.24■□□□□ 0.51
GGA3-220ENST00000613421 CCER2I3L3R5 266 aa18.23■□□□□ 0.51
GGA3-220ENST00000613421 CADPSQ9ULU8 1353 aa18.23■□□□□ 0.51
GGA3-220ENST00000613421 TDRD9Q8NDG6 1382 aaKnown RBP18.23■□□□□ 0.51
GGA3-220ENST00000613421 PLPPR3Q6T4P5 718 aa18.2■□□□□ 0.5
GGA3-220ENST00000613421 HSPA5P11021 654 aaKnown RBP18.18■□□□□ 0.5
GGA3-220ENST00000613421 PPP4R2Q9NY27 417 aa18.18■□□□□ 0.5
GGA3-220ENST00000613421 FHOD3Q2V2M9 1422 aa18.17■□□□□ 0.5
GGA3-220ENST00000613421 DCAF11Q8TEB1 546 aa18.16■□□□□ 0.5
GGA3-220ENST00000613421 SENP3Q9H4L4 574 aaPredicted RBP18.14■□□□□ 0.49
GGA3-220ENST00000613421 CFAP53Q96M91 514 aa18.13■□□□□ 0.49
GGA3-220ENST00000613421 FOXD1Q16676 465 aa18.12■□□□□ 0.49
GGA3-220ENST00000613421 PPP1R15AO75807 674 aaPredicted RBP18.11■□□□□ 0.49
GGA3-220ENST00000613421 MPHOSPH9Q99550 1183 aa18.11■□□□□ 0.49
GGA3-220ENST00000613421 CARMIL2Q6F5E8 1435 aa18.1■□□□□ 0.49
GGA3-220ENST00000613421 PKD2Q13563 968 aa18.1■□□□□ 0.49
GGA3-220ENST00000613421 ANP32BQ92688 251 aaKnown RBP18.1■□□□□ 0.49
GGA3-220ENST00000613421 DHX57Q6P158 1386 aaKnown RBP18.09■□□□□ 0.49
GGA3-220ENST00000613421 DDRGK1Q96HY6 314 aa18.09■□□□□ 0.49
GGA3-220ENST00000613421 CC2D1BQ5T0F9 858 aaKnown RBP18.09■□□□□ 0.49
GGA3-220ENST00000613421 TMF1P82094 1093 aa18.07■□□□□ 0.48
GGA3-220ENST00000613421 ANP32EQ9BTT0 268 aa18.07■□□□□ 0.48
GGA3-220ENST00000613421 MYH16Q9H6N6 1097 aa18.06■□□□□ 0.48
GGA3-220ENST00000613421 B4GALNT3Q6L9W6 998 aa18.03■□□□□ 0.48
GGA3-220ENST00000613421 KANK1Q14678 1352 aa18.02■□□□□ 0.47
GGA3-220ENST00000613421 ANKRD30AQ9BXX3 1397 aa18.01■□□□□ 0.47
GGA3-220ENST00000613421 FANCD2Q9BXW9 1451 aa18.01■□□□□ 0.47
GGA3-220ENST00000613421 BECN1Q14457 450 aa18■□□□□ 0.47
GGA3-220ENST00000613421 NEUROD2Q15784 382 aa18■□□□□ 0.47
GGA3-220ENST00000613421 NUP155O75694 1391 aa17.99■□□□□ 0.47
GGA3-220ENST00000613421 CCDC18Q5T9S5 1454 aa17.99■□□□□ 0.47
GGA3-220ENST00000613421 L3MBTL2Q969R5 705 aa17.97■□□□□ 0.47
GGA3-220ENST00000613421 MAPK8IP3Q9UPT6 1336 aa17.95■□□□□ 0.46
GGA3-220ENST00000613421 FTSJ3Q8IY81 847 aaKnown RBP17.95■□□□□ 0.46
GGA3-220ENST00000613421 NUDCQ9Y266 331 aa17.95■□□□□ 0.46
GGA3-220ENST00000613421 PPM1GO15355 546 aaPredicted RBP17.95■□□□□ 0.46
GGA3-220ENST00000613421 TNNT2P45379 298 aaPredicted RBP17.95■□□□□ 0.46
GGA3-220ENST00000613421 KTN1Q86UP2 1357 aaKnown RBP17.94■□□□□ 0.46
GGA3-220ENST00000613421 POGKQ9P215 609 aa17.94■□□□□ 0.46
GGA3-220ENST00000613421 ARXQ96QS3 562 aa17.94■□□□□ 0.46
GGA3-220ENST00000613421 ROCK2O75116 1388 aaKnown RBP17.93■□□□□ 0.46
GGA3-220ENST00000613421 IGF1RP08069 1367 aa17.92■□□□□ 0.46
GGA3-220ENST00000613421 EIF5BO60841 1220 aaKnown RBP17.92■□□□□ 0.46
GGA3-220ENST00000613421 FGD5Q6ZNL6 1462 aa17.92■□□□□ 0.46
GGA3-220ENST00000613421 KIF21BO75037 1637 aa17.92■□□□□ 0.46
GGA3-220ENST00000613421 ERICH6BQ5W0A0 696 aa17.9■□□□□ 0.46
GGA3-220ENST00000613421 FRAT1Q92837 279 aaPredicted RBP17.9■□□□□ 0.46
GGA3-220ENST00000613421 RGS3P49796 1198 aa17.9■□□□□ 0.46
GGA3-220ENST00000613421 NOP58Q9Y2X3 529 aaKnown RBP17.89■□□□□ 0.45
GGA3-220ENST00000613421 RALBP1Q15311 655 aa17.89■□□□□ 0.45
GGA3-220ENST00000613421 C14orf37Q86TY3 774 aa17.89■□□□□ 0.45
GGA3-220ENST00000613421 EFCAB2Q5VUJ9 269 aa17.87■□□□□ 0.45
GGA3-220ENST00000613421 ARID4BQ4LE39 1312 aaPredicted RBP17.87■□□□□ 0.45
GGA3-220ENST00000613421 RBM19Q9Y4C8 960 aaKnown RBP17.87■□□□□ 0.45
GGA3-220ENST00000613421 NCAPD3P42695 1498 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms