RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 DNMBPQ6XZF7 1577 aa29.54■■■□□ 2.32
SHKBP1-225ENST00000600733 RAB3GAP2Q9H2M9 1393 aa29.53■■■□□ 2.32
SHKBP1-225ENST00000600733 FHAD1B1AJZ9 1412 aa29.51■■■□□ 2.31
SHKBP1-225ENST00000600733 PHLDB1Q86UU1 1377 aa29.51■■■□□ 2.31
SHKBP1-225ENST00000600733 PCF11O94913 1555 aaKnown RBP29.5■■■□□ 2.31
SHKBP1-225ENST00000600733 POLA1P09884 1462 aaPredicted RBP29.49■■■□□ 2.31
SHKBP1-225ENST00000600733 TOPBP1Q92547 1522 aa29.49■■■□□ 2.31
SHKBP1-225ENST00000600733 NESP48681 1621 aa29.48■■■□□ 2.31
SHKBP1-225ENST00000600733 ABCA10Q8WWZ4 1543 aa29.48■■■□□ 2.31
SHKBP1-225ENST00000600733 CFAP43Q8NDM7 1665 aa29.46■■■□□ 2.31
SHKBP1-225ENST00000600733 ATP1B4Q9UN42 357 aaPredicted RBP29.44■■■□□ 2.3
SHKBP1-225ENST00000600733 MAPKBP1O60336 1514 aa29.44■■■□□ 2.3
SHKBP1-225ENST00000600733 FHOD3Q2V2M9 1422 aa29.43■■■□□ 2.3
SHKBP1-225ENST00000600733 FAM50AQ14320 339 aaKnown RBP29.4■■■□□ 2.3
SHKBP1-225ENST00000600733 SETD5Q9C0A6 1442 aa29.4■■■□□ 2.3
SHKBP1-225ENST00000600733 CUL7Q14999 1698 aa29.34■■■□□ 2.29
SHKBP1-225ENST00000600733 EFCAB5A4FU69 1503 aa29.33■■■□□ 2.29
SHKBP1-225ENST00000600733 FYCO1Q9BQS8 1478 aa29.32■■■□□ 2.28
SHKBP1-225ENST00000600733 CTTNBP2Q8WZ74 1663 aa29.31■■■□□ 2.28
SHKBP1-225ENST00000600733 CASKIN1Q8WXD9 1431 aa29.28■■■□□ 2.28
SHKBP1-225ENST00000600733 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
SHKBP1-225ENST00000600733 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.271e-9■■■■□ 22.4
SHKBP1-225ENST00000600733 WDR97A6NE52 1622 aa29.23■■■□□ 2.27
SHKBP1-225ENST00000600733 SIN3AQ96ST3 1273 aa29.21■■■□□ 2.27
SHKBP1-225ENST00000600733 LAMC3Q9Y6N6 1575 aa29.2■■■□□ 2.26
SHKBP1-225ENST00000600733 TDRD9Q8NDG6 1382 aaKnown RBP29.17■■■□□ 2.26
SHKBP1-225ENST00000600733 FMN1Q68DA7 1419 aa29.16■■■□□ 2.26
SHKBP1-225ENST00000600733 SNAPC4Q5SXM2 1469 aa29.15■■■□□ 2.26
SHKBP1-225ENST00000600733 ABCA5Q8WWZ7 1642 aa29.13■■■□□ 2.25
SHKBP1-225ENST00000600733 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.11■■■□□ 2.25
SHKBP1-225ENST00000600733 FGD6Q6ZV73 1430 aa29.09■■■□□ 2.25
SHKBP1-225ENST00000600733 GAPVD1Q14C86 1478 aa29.09■■■□□ 2.25
SHKBP1-225ENST00000600733 SAMD9Q5K651 1589 aa29.07■■■□□ 2.24
SHKBP1-225ENST00000600733 MTUS2Q5JR59 1369 aa29.06■■■□□ 2.24
SHKBP1-225ENST00000600733 LRRIQ1Q96JM4 1722 aa29.05■■■□□ 2.24
SHKBP1-225ENST00000600733 DNAJC5BQ9UF47 199 aa29.04■■■□□ 2.24
SHKBP1-225ENST00000600733 PDS5BQ9NTI5 1447 aa29.01■■■□□ 2.23
SHKBP1-225ENST00000600733 KCNH8Q96L42 1107 aa29■■■□□ 2.23
SHKBP1-225ENST00000600733 KIF21AQ7Z4S6 1674 aa28.97■■■□□ 2.23
SHKBP1-225ENST00000600733 PTPRKQ15262 1439 aa28.97■■■□□ 2.23
SHKBP1-225ENST00000600733 GRIN2BQ13224 1484 aa28.97■■■□□ 2.23
SHKBP1-225ENST00000600733 TIMELESSQ9UNS1 1208 aa28.96■■■□□ 2.23
SHKBP1-225ENST00000600733 DDX10Q13206 875 aaKnown RBP28.94■■■□□ 2.22
SHKBP1-225ENST00000600733 NCOA2Q15596 1464 aa28.94■■■□□ 2.22
SHKBP1-225ENST00000600733 CCDC18Q5T9S5 1454 aa28.94■■■□□ 2.22
SHKBP1-225ENST00000600733 PPP1R15AO75807 674 aaPredicted RBP28.92■■■□□ 2.22
SHKBP1-225ENST00000600733 HFM1A2PYH4 1435 aa28.9■■■□□ 2.22
SHKBP1-225ENST00000600733 MYOM3Q5VTT5 1437 aa28.89■■■□□ 2.22
SHKBP1-225ENST00000600733 HIRIP3Q9BW71 556 aaPredicted RBP28.89■■■□□ 2.22
SHKBP1-225ENST00000600733 TARBP1Q13395 1621 aaKnown RBP28.89■■■□□ 2.21
SHKBP1-225ENST00000600733 SUPT16HQ9Y5B9 1047 aaKnown RBP28.88■■■□□ 2.21
SHKBP1-225ENST00000600733 THOC2Q8NI27 1593 aaKnown RBP28.88■■■□□ 2.21
SHKBP1-225ENST00000600733 PTPN23Q9H3S7 1636 aa28.88■■■□□ 2.21
SHKBP1-225ENST00000600733 SUPT6HQ7KZ85 1726 aaKnown RBP28.87■■■□□ 2.21
SHKBP1-225ENST00000600733 EHBP1L1Q8N3D4 1523 aa28.84■■■□□ 2.21
SHKBP1-225ENST00000600733 UACAQ9BZF9 1416 aa28.84■■■□□ 2.21
SHKBP1-225ENST00000600733 NAIPQ13075 1403 aa28.82■■■□□ 2.2
SHKBP1-225ENST00000600733 MAGI3Q5TCQ9 1506 aa28.82■■■□□ 2.2
SHKBP1-225ENST00000600733 TONSLQ96HA7 1378 aa28.8■■■□□ 2.2
SHKBP1-225ENST00000600733 UGGT2Q9NYU1 1516 aa28.79■■■□□ 2.2
SHKBP1-225ENST00000600733 PBRM1Q86U86 1689 aa28.77■■■□□ 2.2
SHKBP1-225ENST00000600733 ARHGEF11O15085 1522 aa28.75■■■□□ 2.19
SHKBP1-225ENST00000600733 IQGAP2Q13576 1575 aa28.7■■■□□ 2.19
SHKBP1-225ENST00000600733 HECW1Q76N89 1606 aa28.69■■■□□ 2.18
SHKBP1-225ENST00000600733 RRP7BPQ9NSQ0 103 aa28.67■■■□□ 2.18
SHKBP1-225ENST00000600733 ADAMTS12P58397 1594 aa28.66■■■□□ 2.18
SHKBP1-225ENST00000600733 CHIC2Q9UKJ5 165 aa28.66■■■□□ 2.18
SHKBP1-225ENST00000600733 EPRSP07814 1512 aaKnown RBP28.65■■■□□ 2.18
SHKBP1-225ENST00000600733 TCOF1Q13428 1488 aaKnown RBP28.63■■■□□ 2.17
SHKBP1-225ENST00000600733 CDK13Q14004 1512 aaKnown RBP28.63■■■□□ 2.17
SHKBP1-225ENST00000600733 ARID3CA6NKF2 412 aa28.62■■■□□ 2.17
SHKBP1-225ENST00000600733 KDM5BQ9UGL1 1544 aa28.6■■■□□ 2.17
SHKBP1-225ENST00000600733 ANP32CO43423 234 aa28.6■■■□□ 2.17
SHKBP1-225ENST00000600733 GCC2Q8IWJ2 1684 aa28.59■■■□□ 2.17
SHKBP1-225ENST00000600733 MRC2Q9UBG0 1479 aa28.57■■■□□ 2.16
SHKBP1-225ENST00000600733 WDR62O43379 1518 aa28.57■■■□□ 2.16
SHKBP1-225ENST00000600733 CCER2I3L3R5 266 aa28.56■■■□□ 2.16
SHKBP1-225ENST00000600733 KDM6BO15054 1643 aa28.55■■■□□ 2.16
SHKBP1-225ENST00000600733 DENND4BO75064 1496 aaPredicted RBP28.55■■■□□ 2.16
SHKBP1-225ENST00000600733 TRIM52Q96A61 297 aa28.53■■■□□ 2.16
SHKBP1-225ENST00000600733 ZNF608Q9ULD9 1512 aaPredicted RBP28.5■■■□□ 2.15
SHKBP1-225ENST00000600733 MIA2Q96PC5 1412 aa28.5■■■□□ 2.15
SHKBP1-225ENST00000600733 AKNAQ7Z591 1439 aa28.49■■■□□ 2.15
SHKBP1-225ENST00000600733 BCANQ96GW7 911 aa28.42■■■□□ 2.14
SHKBP1-225ENST00000600733 MPHOSPH9Q99550 1183 aa28.42■■■□□ 2.14
SHKBP1-225ENST00000600733 FKBP8Q14318 412 aa28.41■■■□□ 2.14
SHKBP1-225ENST00000600733 IFT140Q96RY7 1462 aa28.4■■■□□ 2.14
SHKBP1-225ENST00000600733 DISP1Q96F81 1524 aa28.4■■■□□ 2.14
SHKBP1-225ENST00000600733 KIAA0556O60303 1618 aa28.39■■■□□ 2.14
SHKBP1-225ENST00000600733 FOXD1Q16676 465 aa28.39■■■□□ 2.13
SHKBP1-225ENST00000600733 KIAA0586Q9BVV6 1533 aa28.38■■■□□ 2.13
SHKBP1-225ENST00000600733 HSPA5P11021 654 aaKnown RBP28.37■■■□□ 2.13
SHKBP1-225ENST00000600733 TSHZ2Q9NRE2 1034 aa28.36■■■□□ 2.13
SHKBP1-225ENST00000600733 NUP153P49790 1475 aaKnown RBP28.35■■■□□ 2.13
SHKBP1-225ENST00000600733 DAPK1P53355 1430 aa28.35■■■□□ 2.13
SHKBP1-225ENST00000600733 WASHC2AQ641Q2 1341 aa28.34■■■□□ 2.13
SHKBP1-225ENST00000600733 ZNF644Q9H582 1327 aaPredicted RBP28.33■■■□□ 2.13
SHKBP1-225ENST00000600733 L3MBTL2Q969R5 705 aa28.31■■■□□ 2.12
SHKBP1-225ENST00000600733 ABCC5O15440 1437 aa28.3■■■□□ 2.12
SHKBP1-225ENST00000600733 DNMT1P26358 1616 aaKnown RBP28.3■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms