RNA–Protein interactions for RNA: ENST00000590061.1

SMAD4-210, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 544 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-210ENST00000590061 CREBZFQ9NS37 354 aa12.66□□□□□ -0.38
SMAD4-210ENST00000590061 WIZO95785 1651 aa12.66□□□□□ -0.38
SMAD4-210ENST00000590061 TOP2AP11388 1531 aaKnown RBP12.66□□□□□ -0.38
SMAD4-210ENST00000590061 CC2D2AQ9P2K1 1620 aa12.66□□□□□ -0.38
SMAD4-210ENST00000590061 FKBP8Q14318 412 aa12.65□□□□□ -0.38
SMAD4-210ENST00000590061 HAX1O00165 279 aa12.64□□□□□ -0.39
SMAD4-210ENST00000590061 EVX2Q03828 476 aa12.63□□□□□ -0.39
SMAD4-210ENST00000590061 C19orf67A6NJJ6 358 aa12.62□□□□□ -0.39
SMAD4-210ENST00000590061 SP7Q8TDD2 431 aaPredicted RBP12.61□□□□□ -0.39
SMAD4-210ENST00000590061 FARP1Q9Y4F1 1045 aaPredicted RBP12.6□□□□□ -0.39
SMAD4-210ENST00000590061 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
SMAD4-210ENST00000590061 CCDC88BA6NC98 1476 aa12.47□□□□□ -0.41
SMAD4-210ENST00000590061 CD44P16070 742 aaKnown RBP12.43□□□□□ -0.42
SMAD4-210ENST00000590061 DNAJC5Q9H3Z4 198 aa12.41□□□□□ -0.42
SMAD4-210ENST00000590061 CADPSQ9ULU8 1353 aa12.38□□□□□ -0.43
SMAD4-210ENST00000590061 CFTRP13569 1480 aa12.35□□□□□ -0.43
SMAD4-210ENST00000590061 LAMC3Q9Y6N6 1575 aa12.34□□□□□ -0.43
SMAD4-210ENST00000590061 NPM1P06748 294 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMAD4-210ENST00000590061 GABBR2O75899 941 aa12.32□□□□□ -0.44
SMAD4-210ENST00000590061 ZNF579Q8NAF0 562 aaKnown RBP12.31□□□□□ -0.44
SMAD4-210ENST00000590061 PDS5BQ9NTI5 1447 aa12.3□□□□□ -0.44
SMAD4-210ENST00000590061 MIER1Q8N108 512 aa12.3□□□□□ -0.44
SMAD4-210ENST00000590061 ZRANB1Q9UGI0 708 aa12.28□□□□□ -0.44
SMAD4-210ENST00000590061 PRDM2Q13029 1718 aa12.26□□□□□ -0.45
SMAD4-210ENST00000590061 FBXO3Q9UK99 471 aa12.26□□□□□ -0.45
SMAD4-210ENST00000590061 PLCD3Q8N3E9 789 aa12.24□□□□□ -0.45
SMAD4-210ENST00000590061 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
SMAD4-210ENST00000590061 PLEKHG5O94827 1062 aa12.22□□□□□ -0.45
SMAD4-210ENST00000590061 CLCN6P51797 869 aa12.2□□□□□ -0.46
SMAD4-210ENST00000590061 PAK3O75914 559 aaPredicted RBP12.19□□□□□ -0.46
SMAD4-210ENST00000590061 TRIM41Q8WV44 630 aa12.19□□□□□ -0.46
SMAD4-210ENST00000590061 PHF12Q96QT6 1004 aa12.19□□□□□ -0.46
SMAD4-210ENST00000590061 FANCD2Q9BXW9 1451 aa12.19□□□□□ -0.46
SMAD4-210ENST00000590061 VASPP50552 380 aaPredicted RBP12.18□□□□□ -0.46
SMAD4-210ENST00000590061 RASEFQ8IZ41 740 aa12.18□□□□□ -0.46
SMAD4-210ENST00000590061 CEP164Q9UPV0 1460 aa12.17□□□□□ -0.46
SMAD4-210ENST00000590061 NUBP1P53384 320 aa12.16□□□□□ -0.46
SMAD4-210ENST00000590061 WRNQ14191 1432 aaPredicted RBP eCLIP12.16□□□□□ -0.46
SMAD4-210ENST00000590061 CCDC61Q9Y6R9 512 aa12.15□□□□□ -0.46
SMAD4-210ENST00000590061 ZBTB47Q9UFB7 747 aaPredicted RBP12.14□□□□□ -0.47
SMAD4-210ENST00000590061 POTEIP0CG38 1075 aa12.13□□□□□ -0.47
SMAD4-210ENST00000590061 CUX2O14529 1486 aa12.13□□□□□ -0.47
SMAD4-210ENST00000590061 NESP48681 1621 aa12.12□□□□□ -0.47
SMAD4-210ENST00000590061 GALR2O43603 387 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-210ENST00000590061 TSPYL2Q9H2G4 693 aaPredicted RBP12.12□□□□□ -0.47
SMAD4-210ENST00000590061 ERCC6Q03468 1493 aa12.12□□□□□ -0.47
SMAD4-210ENST00000590061 TOP2BQ02880 1626 aa12.07□□□□□ -0.48
SMAD4-210ENST00000590061 MRC2Q9UBG0 1479 aa12.07□□□□□ -0.48
SMAD4-210ENST00000590061 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
SMAD4-210ENST00000590061 MS4A3Q96HJ5 214 aa12.05□□□□□ -0.48
SMAD4-210ENST00000590061 EEA1Q15075 1411 aa12.04□□□□□ -0.48
SMAD4-210ENST00000590061 KIF12Q96FN5 646 aa12.04□□□□□ -0.48
SMAD4-210ENST00000590061 BIVM-ERCC5R4GMW8 1640 aa12.04□□□□□ -0.48
SMAD4-210ENST00000590061 KIF21AQ7Z4S6 1674 aa12.01□□□□□ -0.49
SMAD4-210ENST00000590061 IFNLR1Q8IU57 520 aaPredicted RBP12.01□□□□□ -0.49
SMAD4-210ENST00000590061 CUX1P39880 1505 aa12.01□□□□□ -0.49
SMAD4-210ENST00000590061 TOPBP1Q92547 1522 aa12.01□□□□□ -0.49
SMAD4-210ENST00000590061 SYNJ1O43426 1573 aa11.98□□□□□ -0.49
SMAD4-210ENST00000590061 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
SMAD4-210ENST00000590061 WDR62O43379 1518 aa11.97□□□□□ -0.49
SMAD4-210ENST00000590061 DCBLD2Q96PD2 775 aa11.97□□□□□ -0.49
SMAD4-210ENST00000590061 URB2Q14146 1524 aaKnown RBP11.96□□□□□ -0.49
SMAD4-210ENST00000590061 MAP3K13O43283 966 aa11.96□□□□□ -0.49
SMAD4-210ENST00000590061 SOGA1O94964 1423 aa11.94□□□□□ -0.5
SMAD4-210ENST00000590061 KIF27Q86VH2 1401 aa11.94□□□□□ -0.5
SMAD4-210ENST00000590061 FGD5Q6ZNL6 1462 aa11.94□□□□□ -0.5
SMAD4-210ENST00000590061 KLHL34Q8N239 644 aa11.93□□□□□ -0.5
SMAD4-210ENST00000590061 IFT140Q96RY7 1462 aa11.93□□□□□ -0.5
SMAD4-210ENST00000590061 WDR97A6NE52 1622 aa11.93□□□□□ -0.5
SMAD4-210ENST00000590061 POLA1P09884 1462 aaPredicted RBP11.92□□□□□ -0.5
SMAD4-210ENST00000590061 ASTLQ6HA08 431 aaPredicted RBP11.92□□□□□ -0.5
SMAD4-210ENST00000590061 TRPC6Q9Y210 931 aa11.92□□□□□ -0.5
SMAD4-210ENST00000590061 ABCA10Q8WWZ4 1543 aa11.91□□□□□ -0.5
SMAD4-210ENST00000590061 THOC2Q8NI27 1593 aaKnown RBP11.9□□□□□ -0.5
SMAD4-210ENST00000590061 SGIP1Q9BQI5 828 aa11.9□□□□□ -0.5
SMAD4-210ENST00000590061 PELP1Q8IZL8 1130 aaKnown RBP11.89□□□□□ -0.51
SMAD4-210ENST00000590061 ATMINO43313 823 aaPredicted RBP11.88□□□□□ -0.51
SMAD4-210ENST00000590061 DCAF8Q5TAQ9 597 aa11.87□□□□□ -0.51
SMAD4-210ENST00000590061 SPOCK2Q92563 424 aa11.87□□□□□ -0.51
SMAD4-210ENST00000590061 BMP2KQ9NSY1 1161 aaPredicted RBP11.85□□□□□ -0.51
SMAD4-210ENST00000590061 PCDHB13Q9Y5F0 798 aa11.85□□□□□ -0.51
SMAD4-210ENST00000590061 IFNL1Q8IU54 200 aa11.84□□□□□ -0.51
SMAD4-210ENST00000590061 TIE1P35590 1138 aa11.83□□□□□ -0.52
SMAD4-210ENST00000590061 GSE1Q14687 1217 aa11.83□□□□□ -0.52
SMAD4-210ENST00000590061 PYGBP11216 843 aa11.82□□□□□ -0.52
SMAD4-210ENST00000590061 TARBP1Q13395 1621 aaKnown RBP11.82□□□□□ -0.52
SMAD4-210ENST00000590061 ATN1P54259 1190 aaPredicted RBP11.81□□□□□ -0.52
SMAD4-210ENST00000590061 LHX8Q68G74 356 aa11.81□□□□□ -0.52
SMAD4-210ENST00000590061 GAPVD1Q14C86 1478 aa11.81□□□□□ -0.52
SMAD4-210ENST00000590061 RAD54L2Q9Y4B4 1467 aa11.81□□□□□ -0.52
SMAD4-210ENST00000590061 ERICH3Q5RHP9 1530 aa11.81□□□□□ -0.52
SMAD4-210ENST00000590061 GRIN2BQ13224 1484 aa11.78□□□□□ -0.52
SMAD4-210ENST00000590061 CHRM1P11229 460 aaPredicted RBP11.78□□□□□ -0.52
SMAD4-210ENST00000590061 IGF1RP08069 1367 aa11.78□□□□□ -0.52
SMAD4-210ENST00000590061 TTLL13PA6NNM8 815 aa11.77□□□□□ -0.53
SMAD4-210ENST00000590061 FAM9AQ8IZU1 332 aaPredicted RBP11.77□□□□□ -0.53
SMAD4-210ENST00000590061 TDRD9Q8NDG6 1382 aaKnown RBP11.77□□□□□ -0.53
SMAD4-210ENST00000590061 CUL7Q14999 1698 aa11.76□□□□□ -0.53
SMAD4-210ENST00000590061 ABCA5Q8WWZ7 1642 aa11.75□□□□□ -0.53
SMAD4-210ENST00000590061 CARMIL1Q5VZK9 1371 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms