RNA–Protein interactions for RNA: ENST00000578373.5

ERBB2-206, Transcript of erb-b2 receptor tyrosine kinase 2, humanhuman

TSL 1 (best)

Gene ERBB2, Length 4,523 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERBB2-206ENST00000578373 CEP164Q9UPV0 1460 aa16.3■□□□□ 0.2
ERBB2-206ENST00000578373 SENP3Q9H4L4 574 aaPredicted RBP16.3■□□□□ 0.2
ERBB2-206ENST00000578373 NACADO15069 1562 aa16.3■□□□□ 0.2
ERBB2-206ENST00000578373 CHGAP10645 457 aaKnown RBP16.29■□□□□ 0.2
ERBB2-206ENST00000578373 RGL3Q3MIN7 710 aa16.26■□□□□ 0.19
ERBB2-206ENST00000578373 KCNH8Q96L42 1107 aa16.26■□□□□ 0.19
ERBB2-206ENST00000578373 ANP32EQ9BTT0 268 aa16.24■□□□□ 0.19
ERBB2-206ENST00000578373 ZBTB47Q9UFB7 747 aaPredicted RBP16.24■□□□□ 0.19
ERBB2-206ENST00000578373 ARXQ96QS3 562 aa16.23■□□□□ 0.19
ERBB2-206ENST00000578373 CCNB3Q8WWL7 1395 aa16.22■□□□□ 0.19
ERBB2-206ENST00000578373 EIF5BO60841 1220 aaKnown RBP16.22■□□□□ 0.19
ERBB2-206ENST00000578373 B4GALNT3Q6L9W6 998 aa16.22■□□□□ 0.19
ERBB2-206ENST00000578373 SLC24A1O60721 1099 aa16.21■□□□□ 0.19
ERBB2-206ENST00000578373 BAZ1BQ9UIG0 1483 aaKnown RBP16.21■□□□□ 0.18
ERBB2-206ENST00000578373 KIF27Q86VH2 1401 aa16.2■□□□□ 0.18
ERBB2-206ENST00000578373 TSPY4P0CV99 314 aa16.19■□□□□ 0.18
ERBB2-206ENST00000578373 TSPY10P0CW01 314 aa16.19■□□□□ 0.18
ERBB2-206ENST00000578373 BAZ1AQ9NRL2 1556 aaPredicted RBP16.17■□□□□ 0.18
ERBB2-206ENST00000578373 FOXD1Q16676 465 aa16.17■□□□□ 0.18
ERBB2-206ENST00000578373 RUSC2Q8N2Y8 1516 aa16.17■□□□□ 0.18
ERBB2-206ENST00000578373 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
ERBB2-206ENST00000578373 CHMP7Q8WUX9 453 aaPredicted RBP16.11■□□□□ 0.17
ERBB2-206ENST00000578373 WIZO95785 1651 aa16.11■□□□□ 0.17
ERBB2-206ENST00000578373 RBM19Q9Y4C8 960 aaKnown RBP16.1■□□□□ 0.17
ERBB2-206ENST00000578373 WDR43Q15061 677 aaKnown RBP eCLIP16.09■□□□□ 0.171e-5■■■■□ 24.6
ERBB2-206ENST00000578373 TSHZ2Q9NRE2 1034 aa16.08■□□□□ 0.17
ERBB2-206ENST00000578373 RAB3GAP2Q9H2M9 1393 aa16.07■□□□□ 0.16
ERBB2-206ENST00000578373 CFDP1Q9UEE9 299 aaPredicted RBP16.07■□□□□ 0.16
ERBB2-206ENST00000578373 CARD11Q9BXL7 1154 aa16.06■□□□□ 0.16
ERBB2-206ENST00000578373 CARMIL1Q5VZK9 1371 aa16.05■□□□□ 0.16
ERBB2-206ENST00000578373 NEFMP07197 916 aa16.04■□□□□ 0.16
ERBB2-206ENST00000578373 HSPA5P11021 654 aaKnown RBP16.04■□□□□ 0.16
ERBB2-206ENST00000578373 CUX2O14529 1486 aa16.04■□□□□ 0.16
ERBB2-206ENST00000578373 LAS1LQ9Y4W2 734 aaKnown RBP16.04■□□□□ 0.16
ERBB2-206ENST00000578373 PPP4R2Q9NY27 417 aa16.03■□□□□ 0.16
ERBB2-206ENST00000578373 PLPPR3Q6T4P5 718 aa16.03■□□□□ 0.16
ERBB2-206ENST00000578373 RTN4Q9NQC3 1192 aaKnown RBP16.01■□□□□ 0.15
ERBB2-206ENST00000578373 SETD5Q9C0A6 1442 aa16.01■□□□□ 0.15
ERBB2-206ENST00000578373 HSP90AA1P07900 732 aaKnown RBP16■□□□□ 0.15
ERBB2-206ENST00000578373 NEUROD2Q15784 382 aa16■□□□□ 0.15
ERBB2-206ENST00000578373 RAPGEF2Q9Y4G8 1499 aa15.99■□□□□ 0.15
ERBB2-206ENST00000578373 PLEKHD1A6NEE1 506 aa15.99■□□□□ 0.15
ERBB2-206ENST00000578373 CC2D1BQ5T0F9 858 aaKnown RBP15.99■□□□□ 0.15
ERBB2-206ENST00000578373 PPP1R15AO75807 674 aaPredicted RBP15.98■□□□□ 0.15
ERBB2-206ENST00000578373 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.97■□□□□ 0.15
ERBB2-206ENST00000578373 RGS3P49796 1198 aa15.96■□□□□ 0.14
ERBB2-206ENST00000578373 UPF2Q9HAU5 1272 aaKnown RBP15.96■□□□□ 0.14
ERBB2-206ENST00000578373 DHX57Q6P158 1386 aaKnown RBP15.95■□□□□ 0.14
ERBB2-206ENST00000578373 DCAF11Q8TEB1 546 aa15.94■□□□□ 0.14
ERBB2-206ENST00000578373 STAG3Q9UJ98 1225 aa15.94■□□□□ 0.14
ERBB2-206ENST00000578373 CCER2I3L3R5 266 aa15.93■□□□□ 0.14
ERBB2-206ENST00000578373 TNNT2P45379 298 aaPredicted RBP15.93■□□□□ 0.14
ERBB2-206ENST00000578373 NOP58Q9Y2X3 529 aaKnown RBP15.89■□□□□ 0.14
ERBB2-206ENST00000578373 KNSTRNQ9Y448 316 aa15.88■□□□□ 0.13
ERBB2-206ENST00000578373 FHAD1B1AJZ9 1412 aa15.88■□□□□ 0.13
ERBB2-206ENST00000578373 TDRD9Q8NDG6 1382 aaKnown RBP15.88■□□□□ 0.13
ERBB2-206ENST00000578373 L3MBTL2Q969R5 705 aa15.88■□□□□ 0.13
ERBB2-206ENST00000578373 TIMELESSQ9UNS1 1208 aa15.87■□□□□ 0.13
ERBB2-206ENST00000578373 MPHOSPH9Q99550 1183 aa15.86■□□□□ 0.13
ERBB2-206ENST00000578373 PKD2Q13563 968 aa15.85■□□□□ 0.13
ERBB2-206ENST00000578373 FRAT1Q92837 279 aaPredicted RBP15.84■□□□□ 0.13
ERBB2-206ENST00000578373 PLEKHG5O94827 1062 aa15.84■□□□□ 0.13
ERBB2-206ENST00000578373 FHOD3Q2V2M9 1422 aa15.82■□□□□ 0.12
ERBB2-206ENST00000578373 EIF4G1Q04637 1599 aaKnown RBP15.82■□□□□ 0.12
ERBB2-206ENST00000578373 PPM1GO15355 546 aaPredicted RBP15.82■□□□□ 0.12
ERBB2-206ENST00000578373 DEKP35659 375 aaKnown RBP15.82■□□□□ 0.12
ERBB2-206ENST00000578373 ARHGAP35Q9NRY4 1499 aa15.81■□□□□ 0.12
ERBB2-206ENST00000578373 NPM1P06748 294 aaKnown RBP eCLIP15.8■□□□□ 0.12
ERBB2-206ENST00000578373 TOP2AP11388 1531 aaKnown RBP15.8■□□□□ 0.12
ERBB2-206ENST00000578373 ESF1Q9H501 851 aaKnown RBP15.79■□□□□ 0.12
ERBB2-206ENST00000578373 ANP32BQ92688 251 aaKnown RBP15.73■□□□□ 0.11
ERBB2-206ENST00000578373 DDRGK1Q96HY6 314 aa15.73■□□□□ 0.11
ERBB2-206ENST00000578373 SAFB2Q14151 953 aaKnown RBP eCLIP15.71■□□□□ 0.11
ERBB2-206ENST00000578373 SPRYD3Q8NCJ5 442 aa15.71■□□□□ 0.1
ERBB2-206ENST00000578373 TPRNQ4KMQ1 711 aa15.69■□□□□ 0.1
ERBB2-206ENST00000578373 RCAN3Q9UKA8 241 aa15.69■□□□□ 0.1
ERBB2-206ENST00000578373 BECN1Q14457 450 aa15.68■□□□□ 0.1
ERBB2-206ENST00000578373 FTSJ3Q8IY81 847 aaKnown RBP15.68■□□□□ 0.1
ERBB2-206ENST00000578373 U2SURPO15042 1029 aaKnown RBP15.67■□□□□ 0.1
ERBB2-206ENST00000578373 NUP155O75694 1391 aa15.67■□□□□ 0.1
ERBB2-206ENST00000578373 TMF1P82094 1093 aa15.66■□□□□ 0.1
ERBB2-206ENST00000578373 PRKRIP1Q9H875 184 aaPredicted RBP15.66■□□□□ 0.1
ERBB2-206ENST00000578373 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
ERBB2-206ENST00000578373 PLIN1O60240 522 aa15.64■□□□□ 0.09
ERBB2-206ENST00000578373 CDCA8Q53HL2 280 aa15.64■□□□□ 0.09
ERBB2-206ENST00000578373 FMN1Q68DA7 1419 aa15.64■□□□□ 0.09
ERBB2-206ENST00000578373 ST20-MTHFSA0A0A6YYL1 179 aa15.64■□□□□ 0.09
ERBB2-206ENST00000578373 NUDCQ9Y266 331 aa15.64■□□□□ 0.09
ERBB2-206ENST00000578373 HNRNPMP52272 730 aaKnown RBP eCLIP15.63■□□□□ 0.09
ERBB2-206ENST00000578373 CFAP53Q96M91 514 aa15.63■□□□□ 0.09
ERBB2-206ENST00000578373 ZBTB7CA1YPR0 619 aa15.62■□□□□ 0.09
ERBB2-206ENST00000578373 NCLP19338 710 aaKnown RBP15.62■□□□□ 0.09
ERBB2-206ENST00000578373 SMARCA4P51532 1647 aa15.62■□□□□ 0.09
ERBB2-206ENST00000578373 MYH16Q9H6N6 1097 aa15.6■□□□□ 0.09
ERBB2-206ENST00000578373 CCDC146Q8IYE0 955 aa15.6■□□□□ 0.09
ERBB2-206ENST00000578373 SLC4A3P48751 1232 aa15.6■□□□□ 0.09
ERBB2-206ENST00000578373 PHLDB1Q86UU1 1377 aa15.6■□□□□ 0.09
ERBB2-206ENST00000578373 SMARCA2P51531 1590 aa15.59■□□□□ 0.09
ERBB2-206ENST00000578373 SLKQ9H2G2 1235 aaPredicted RBP15.59■□□□□ 0.09
ERBB2-206ENST00000578373 ROCK2O75116 1388 aaKnown RBP15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms