RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 MNX1P50219 401 aaPredicted RBP12.08□□□□□ -0.48
LINC00560-201ENST00000564593 PELP1Q8IZL8 1130 aaKnown RBP12.05□□□□□ -0.48
LINC00560-201ENST00000564593 IFNLR1Q8IU57 520 aaPredicted RBP12.02□□□□□ -0.49
LINC00560-201ENST00000564593 POTEMA6NI47 508 aa12□□□□□ -0.49
LINC00560-201ENST00000564593 ASTLQ6HA08 431 aaPredicted RBP12□□□□□ -0.49
LINC00560-201ENST00000564593 MS4A3Q96HJ5 214 aa11.98□□□□□ -0.49
LINC00560-201ENST00000564593 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
LINC00560-201ENST00000564593 ATMINO43313 823 aaPredicted RBP11.96□□□□□ -0.5
LINC00560-201ENST00000564593 POTEGQ6S5H5 508 aa11.96□□□□□ -0.5
LINC00560-201ENST00000564593 C7P10643 843 aa11.95□□□□□ -0.5
LINC00560-201ENST00000564593 SLC39A7Q92504 469 aa11.95□□□□□ -0.5
LINC00560-201ENST00000564593 POTEJP0CG39 1038 aa11.89□□□□□ -0.51
LINC00560-201ENST00000564593 MAMSTRQ6ZN01 415 aa11.89□□□□□ -0.51
LINC00560-201ENST00000564593 KLHL34Q8N239 644 aa11.89□□□□□ -0.51
LINC00560-201ENST00000564593 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
LINC00560-201ENST00000564593 PLCD3Q8N3E9 789 aa11.87□□□□□ -0.51
LINC00560-201ENST00000564593 PCDH10Q9P2E7 1040 aa11.87□□□□□ -0.51
LINC00560-201ENST00000564593 MIER1Q8N108 512 aa11.85□□□□□ -0.51
LINC00560-201ENST00000564593 TSPYL2Q9H2G4 693 aaPredicted RBP11.85□□□□□ -0.51
LINC00560-201ENST00000564593 CCDC61Q9Y6R9 512 aa11.84□□□□□ -0.51
LINC00560-201ENST00000564593 SPOCK2Q92563 424 aa11.83□□□□□ -0.52
LINC00560-201ENST00000564593 ATN1P54259 1190 aaPredicted RBP11.82□□□□□ -0.52
LINC00560-201ENST00000564593 KIF12Q96FN5 646 aa11.79□□□□□ -0.52
LINC00560-201ENST00000564593 SCUBE2Q9NQ36 999 aa11.79□□□□□ -0.52
LINC00560-201ENST00000564593 PLEKHG5O94827 1062 aa11.76□□□□□ -0.53
LINC00560-201ENST00000564593 PKD2Q13563 968 aa11.76□□□□□ -0.53
LINC00560-201ENST00000564593 LCE2DQ5TA82 110 aaPredicted RBP11.76□□□□□ -0.53
LINC00560-201ENST00000564593 BMP2KQ9NSY1 1161 aaPredicted RBP11.75□□□□□ -0.53
LINC00560-201ENST00000564593 POTEFA5A3E0 1075 aa11.72□□□□□ -0.53
LINC00560-201ENST00000564593 FAM163AQ96GL9 167 aaPredicted RBP11.72□□□□□ -0.53
LINC00560-201ENST00000564593 TIE1P35590 1138 aa11.71□□□□□ -0.53
LINC00560-201ENST00000564593 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.54
LINC00560-201ENST00000564593 TRPC6Q9Y210 931 aa11.71□□□□□ -0.54
LINC00560-201ENST00000564593 ZBTB47Q9UFB7 747 aaPredicted RBP11.7□□□□□ -0.54
LINC00560-201ENST00000564593 MAP3K13O43283 966 aa11.69□□□□□ -0.54
LINC00560-201ENST00000564593 RASEFQ8IZ41 740 aa11.65□□□□□ -0.54
LINC00560-201ENST00000564593 ECM2O94769 699 aaPredicted RBP11.64□□□□□ -0.55
LINC00560-201ENST00000564593 TTLL13PA6NNM8 815 aa11.62□□□□□ -0.55
LINC00560-201ENST00000564593 COLQQ9Y215 455 aaPredicted RBP11.61□□□□□ -0.55
LINC00560-201ENST00000564593 SEC24BO95487 1268 aa11.6□□□□□ -0.55
LINC00560-201ENST00000564593 CIZ1Q9ULV3 898 aaPredicted RBP11.59□□□□□ -0.55
LINC00560-201ENST00000564593 IER5LQ5T953 404 aa11.58□□□□□ -0.56
LINC00560-201ENST00000564593 SGIP1Q9BQI5 828 aa11.58□□□□□ -0.56
LINC00560-201ENST00000564593 TRIM35Q9UPQ4 493 aa11.54□□□□□ -0.56
LINC00560-201ENST00000564593 PCDHB13Q9Y5F0 798 aa11.53□□□□□ -0.56
LINC00560-201ENST00000564593 PLCB2Q00722 1185 aa11.51□□□□□ -0.57
LINC00560-201ENST00000564593 RGL2O15211 777 aa11.5□□□□□ -0.57
LINC00560-201ENST00000564593 CDAN1Q8IWY9 1227 aa11.49□□□□□ -0.57
LINC00560-201ENST00000564593 NUBP1P53384 320 aa11.47□□□□□ -0.57
LINC00560-201ENST00000564593 GSE1Q14687 1217 aa11.46□□□□□ -0.57
LINC00560-201ENST00000564593 TRIM41Q8WV44 630 aa11.45□□□□□ -0.58
LINC00560-201ENST00000564593 IFNL1Q8IU54 200 aa11.45□□□□□ -0.58
LINC00560-201ENST00000564593 SLAIN1Q8ND83 568 aa11.45□□□□□ -0.58
LINC00560-201ENST00000564593 DCAF8Q5TAQ9 597 aa11.44□□□□□ -0.58
LINC00560-201ENST00000564593 TMEM106CQ9BVX2 250 aa11.42□□□□□ -0.58
LINC00560-201ENST00000564593 ST18O60284 1047 aa11.41□□□□□ -0.58
LINC00560-201ENST00000564593 PLCG2P16885 1265 aa11.4□□□□□ -0.58
LINC00560-201ENST00000564593 BBXQ8WY36 941 aaPredicted RBP11.4□□□□□ -0.58
LINC00560-201ENST00000564593 FAM212AQ96EL1 285 aa11.4□□□□□ -0.58
LINC00560-201ENST00000564593 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.39□□□□□ -0.59
LINC00560-201ENST00000564593 HAP1P54257 671 aaPredicted RBP11.37□□□□□ -0.59
LINC00560-201ENST00000564593 IRX5P78411 483 aaPredicted RBP11.37□□□□□ -0.59
LINC00560-201ENST00000564593 CHGAP10645 457 aaKnown RBP11.34□□□□□ -0.59
LINC00560-201ENST00000564593 RNF25Q96BH1 459 aaPredicted RBP11.31□□□□□ -0.6
LINC00560-201ENST00000564593 TMEM121BQ9BXQ6 578 aaPredicted RBP11.3□□□□□ -0.6
LINC00560-201ENST00000564593 OCEL1Q9H607 264 aa11.3□□□□□ -0.6
LINC00560-201ENST00000564593 PAXIP1Q6ZW49 1069 aaPredicted RBP11.29□□□□□ -0.6
LINC00560-201ENST00000564593 CFAP44Q96MT7 982 aa11.28□□□□□ -0.6
LINC00560-201ENST00000564593 RIOK3O14730 519 aaKnown RBP11.27□□□□□ -0.61
LINC00560-201ENST00000564593 SNPHO15079 494 aa11.27□□□□□ -0.61
LINC00560-201ENST00000564593 TAOK2Q9UL54 1235 aa11.26□□□□□ -0.61
LINC00560-201ENST00000564593 CHRM1P11229 460 aaPredicted RBP11.25□□□□□ -0.61
LINC00560-201ENST00000564593 HS6ST3Q8IZP7 471 aa11.24□□□□□ -0.61
LINC00560-201ENST00000564593 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.24□□□□□ -0.61
LINC00560-201ENST00000564593 SPRYD3Q8NCJ5 442 aa11.24□□□□□ -0.61
LINC00560-201ENST00000564593 PYGBP11216 843 aa11.23□□□□□ -0.61
LINC00560-201ENST00000564593 MMRN1Q13201 1228 aa11.23□□□□□ -0.61
LINC00560-201ENST00000564593 SPNS2Q8IVW8 549 aa11.22□□□□□ -0.61
LINC00560-201ENST00000564593 PCDHB8Q9UN66 801 aa11.2□□□□□ -0.62
LINC00560-201ENST00000564593 VGFO15240 615 aaPredicted RBP11.19□□□□□ -0.62
LINC00560-201ENST00000564593 VSIG10Q8N0Z9 540 aa11.18□□□□□ -0.62
LINC00560-201ENST00000564593 MARVELD3Q96A59 401 aa11.16□□□□□ -0.62
LINC00560-201ENST00000564593 STK25O00506 426 aa11.16□□□□□ -0.62
LINC00560-201ENST00000564593 DNAJC5Q9H3Z4 198 aa11.15□□□□□ -0.62
LINC00560-201ENST00000564593 PDCD7Q8N8D1 485 aaKnown RBP11.14□□□□□ -0.63
LINC00560-201ENST00000564593 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.11□□□□□ -0.63
LINC00560-201ENST00000564593 C3orf67Q6ZVT6 689 aa11.11□□□□□ -0.63
LINC00560-201ENST00000564593 L3MBTL3Q96JM7 780 aaPredicted RBP11.11□□□□□ -0.63
LINC00560-201ENST00000564593 ZFP91Q96JP5 570 aaPredicted RBP11.11□□□□□ -0.63
LINC00560-201ENST00000564593 ZNF467Q7Z7K2 595 aaPredicted RBP11.1□□□□□ -0.63
LINC00560-201ENST00000564593 TSHZ2Q9NRE2 1034 aa11.09□□□□□ -0.63
LINC00560-201ENST00000564593 BCL11BQ9C0K0 894 aaPredicted RBP11.08□□□□□ -0.64
LINC00560-201ENST00000564593 STK24Q9Y6E0 443 aa11.08□□□□□ -0.64
LINC00560-201ENST00000564593 EMP3P54852 163 aa11.07□□□□□ -0.64
LINC00560-201ENST00000564593 GOLGA2Q08379 1002 aa11.07□□□□□ -0.64
LINC00560-201ENST00000564593 MKRN3Q13064 507 aaKnown RBP11.07□□□□□ -0.64
LINC00560-201ENST00000564593 NKX1-1Q15270 411 aaPredicted RBP11.07□□□□□ -0.64
LINC00560-201ENST00000564593 KDM2AQ9Y2K7 1162 aa11.07□□□□□ -0.64
LINC00560-201ENST00000564593 GTPBP6O43824 516 aaPredicted RBP11.03□□□□□ -0.64
LINC00560-201ENST00000564593 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms