RNA–Protein interactions for RNA: ENST00000564068.1

COMMD4-209, Transcript of COMM domain containing 4, humanhuman

Gene COMMD4, Length 4,204 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-209ENST00000564068 RTN4Q9NQC3 1192 aaKnown RBP17.11■□□□□ 0.33
COMMD4-209ENST00000564068 DEKP35659 375 aaKnown RBP17.09■□□□□ 0.33
COMMD4-209ENST00000564068 WIZO95785 1651 aa17.09■□□□□ 0.33
COMMD4-209ENST00000564068 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
COMMD4-209ENST00000564068 ABCC8Q09428 1581 aa17.06■□□□□ 0.32
COMMD4-209ENST00000564068 PPP4R2Q9NY27 417 aa17.06■□□□□ 0.32
COMMD4-209ENST00000564068 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
COMMD4-209ENST00000564068 TMC1Q8TDI8 760 aa17.04■□□□□ 0.32
COMMD4-209ENST00000564068 CHMP7Q8WUX9 453 aaPredicted RBP17.03■□□□□ 0.32
COMMD4-209ENST00000564068 NOP58Q9Y2X3 529 aaKnown RBP17.03■□□□□ 0.32
COMMD4-209ENST00000564068 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.32
COMMD4-209ENST00000564068 EIF4G2P78344 907 aaKnown RBP eCLIP17.02■□□□□ 0.32
COMMD4-209ENST00000564068 SLC4A1APQ9BWU0 796 aaKnown RBP17.02■□□□□ 0.32
COMMD4-209ENST00000564068 LAS1LQ9Y4W2 734 aaKnown RBP16.97■□□□□ 0.31
COMMD4-209ENST00000564068 RRP7BPQ9NSQ0 103 aa16.97■□□□□ 0.31
COMMD4-209ENST00000564068 CCNB3Q8WWL7 1395 aa16.96■□□□□ 0.31
COMMD4-209ENST00000564068 CCER2I3L3R5 266 aa16.96■□□□□ 0.31
COMMD4-209ENST00000564068 VPS8Q8N3P4 1428 aa16.96■□□□□ 0.31
COMMD4-209ENST00000564068 ARXQ96QS3 562 aa16.95■□□□□ 0.3
COMMD4-209ENST00000564068 SMARCA2P51531 1590 aa16.91■□□□□ 0.3
COMMD4-209ENST00000564068 ZNF777Q9ULD5 760 aaPredicted RBP16.91■□□□□ 0.3
COMMD4-209ENST00000564068 ATAD2BQ9ULI0 1458 aa16.91■□□□□ 0.3
COMMD4-209ENST00000564068 CANXP27824 592 aaKnown RBP16.91■□□□□ 0.3
COMMD4-209ENST00000564068 NEFMP07197 916 aa16.9■□□□□ 0.3
COMMD4-209ENST00000564068 DHX57Q6P158 1386 aaKnown RBP16.89■□□□□ 0.29
COMMD4-209ENST00000564068 MTUS2Q5JR59 1369 aa16.87■□□□□ 0.29
COMMD4-209ENST00000564068 KIF27Q86VH2 1401 aa16.86■□□□□ 0.29
COMMD4-209ENST00000564068 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
COMMD4-209ENST00000564068 PDS5BQ9NTI5 1447 aa16.85■□□□□ 0.29
COMMD4-209ENST00000564068 RAB3GAP2Q9H2M9 1393 aa16.85■□□□□ 0.29
COMMD4-209ENST00000564068 RUSC2Q8N2Y8 1516 aa16.84■□□□□ 0.29
COMMD4-209ENST00000564068 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
COMMD4-209ENST00000564068 KDM2AQ9Y2K7 1162 aa16.83■□□□□ 0.29
COMMD4-209ENST00000564068 NPM1P06748 294 aaKnown RBP eCLIP16.83■□□□□ 0.28
COMMD4-209ENST00000564068 PPP1R15AO75807 674 aaPredicted RBP16.8■□□□□ 0.28
COMMD4-209ENST00000564068 CADPSQ9ULU8 1353 aa16.79■□□□□ 0.28
COMMD4-209ENST00000564068 TIMELESSQ9UNS1 1208 aa16.79■□□□□ 0.28
COMMD4-209ENST00000564068 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.28
COMMD4-209ENST00000564068 SMARCA4P51532 1647 aa16.77■□□□□ 0.28
COMMD4-209ENST00000564068 PPM1GO15355 546 aaPredicted RBP16.76■□□□□ 0.27
COMMD4-209ENST00000564068 HSPA5P11021 654 aaKnown RBP16.76■□□□□ 0.27
COMMD4-209ENST00000564068 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.76■□□□□ 0.27
COMMD4-209ENST00000564068 CC2D2AQ9P2K1 1620 aa16.73■□□□□ 0.27
COMMD4-209ENST00000564068 DDRGK1Q96HY6 314 aa16.72■□□□□ 0.27
COMMD4-209ENST00000564068 CUX2O14529 1486 aa16.72■□□□□ 0.27
COMMD4-209ENST00000564068 GLIPR1L2Q4G1C9 344 aa16.71■□□□□ 0.26
COMMD4-209ENST00000564068 ERICH6BQ5W0A0 696 aa16.71■□□□□ 0.26
COMMD4-209ENST00000564068 FANCIQ9NVI1 1328 aa16.7■□□□□ 0.26
COMMD4-209ENST00000564068 UPF2Q9HAU5 1272 aaKnown RBP16.7■□□□□ 0.26
COMMD4-209ENST00000564068 BICRAQ9NZM4 1560 aa16.69■□□□□ 0.26
COMMD4-209ENST00000564068 CARMIL1Q5VZK9 1371 aa16.68■□□□□ 0.26
COMMD4-209ENST00000564068 TDRD9Q8NDG6 1382 aaKnown RBP16.67■□□□□ 0.26
COMMD4-209ENST00000564068 IPO9Q96P70 1041 aaKnown RBP16.67■□□□□ 0.26
COMMD4-209ENST00000564068 RAPGEF2Q9Y4G8 1499 aa16.66■□□□□ 0.26
COMMD4-209ENST00000564068 RGS3P49796 1198 aa16.65■□□□□ 0.26
COMMD4-209ENST00000564068 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.65■□□□□ 0.26
COMMD4-209ENST00000564068 FOXD1Q16676 465 aa16.65■□□□□ 0.26
COMMD4-209ENST00000564068 NCAPD3P42695 1498 aa16.64■□□□□ 0.25
COMMD4-209ENST00000564068 TRHP20396 242 aaPredicted RBP16.64■□□□□ 0.25
COMMD4-209ENST00000564068 WDR43Q15061 677 aaKnown RBP eCLIP16.63■□□□□ 0.25
COMMD4-209ENST00000564068 HSP90AA1P07900 732 aaKnown RBP16.63■□□□□ 0.25
COMMD4-209ENST00000564068 CARD11Q9BXL7 1154 aa16.59■□□□□ 0.25
COMMD4-209ENST00000564068 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.58■□□□□ 0.24
COMMD4-209ENST00000564068 RGL3Q3MIN7 710 aa16.57■□□□□ 0.24
COMMD4-209ENST00000564068 NESP48681 1621 aa16.57■□□□□ 0.24
COMMD4-209ENST00000564068 PLPPR3Q6T4P5 718 aa16.57■□□□□ 0.24
COMMD4-209ENST00000564068 ANP32BQ92688 251 aaKnown RBP16.56■□□□□ 0.24
COMMD4-209ENST00000564068 FANCD2Q9BXW9 1451 aa16.55■□□□□ 0.24
COMMD4-209ENST00000564068 MSH5O43196 834 aa16.55■□□□□ 0.24
COMMD4-209ENST00000564068 BECN1Q14457 450 aa16.53■□□□□ 0.24
COMMD4-209ENST00000564068 NUDCQ9Y266 331 aa16.53■□□□□ 0.24
COMMD4-209ENST00000564068 L3MBTL2Q969R5 705 aa16.52■□□□□ 0.23
COMMD4-209ENST00000564068 NAP1L5Q96NT1 182 aaPredicted RBP16.51■□□□□ 0.23
COMMD4-209ENST00000564068 CC2D1BQ5T0F9 858 aaKnown RBP16.5■□□□□ 0.23
COMMD4-209ENST00000564068 PRKRIP1Q9H875 184 aaPredicted RBP16.5■□□□□ 0.23
COMMD4-209ENST00000564068 TCERG1O14776 1098 aaKnown RBP16.5■□□□□ 0.23
COMMD4-209ENST00000564068 RCAN3Q9UKA8 241 aa16.5■□□□□ 0.23
COMMD4-209ENST00000564068 TSPY4P0CV99 314 aa16.49■□□□□ 0.23
COMMD4-209ENST00000564068 TSPY10P0CW01 314 aa16.49■□□□□ 0.23
COMMD4-209ENST00000564068 FHAD1B1AJZ9 1412 aa16.49■□□□□ 0.23
COMMD4-209ENST00000564068 PAK3O75914 559 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-209ENST00000564068 ANO8Q9HCE9 1232 aaPredicted RBP16.48■□□□□ 0.23
COMMD4-209ENST00000564068 SLC4A3P48751 1232 aa16.46■□□□□ 0.23
COMMD4-209ENST00000564068 OSCARQ8IYS5 282 aa16.45■□□□□ 0.22
COMMD4-209ENST00000564068 TRIM44Q96DX7 344 aaPredicted RBP16.45■□□□□ 0.22
COMMD4-209ENST00000564068 MPHOSPH9Q99550 1183 aa16.45■□□□□ 0.22
COMMD4-209ENST00000564068 ARHGAP35Q9NRY4 1499 aa16.44■□□□□ 0.22
COMMD4-209ENST00000564068 CYB5RLQ6IPT4 315 aa16.44■□□□□ 0.22
COMMD4-209ENST00000564068 ZBED9Q6R2W3 1325 aa16.43■□□□□ 0.22
COMMD4-209ENST00000564068 PDE4AP27815 886 aa16.43■□□□□ 0.22
COMMD4-209ENST00000564068 NEUROD2Q15784 382 aa16.42■□□□□ 0.22
COMMD4-209ENST00000564068 EXOC6Q8TAG9 804 aa16.41■□□□□ 0.22
COMMD4-209ENST00000564068 UNC13AQ9UPW8 1703 aa16.41■□□□□ 0.22
COMMD4-209ENST00000564068 PLEKHD1A6NEE1 506 aa16.4■□□□□ 0.22
COMMD4-209ENST00000564068 CFDP1Q9UEE9 299 aaPredicted RBP16.4■□□□□ 0.22
COMMD4-209ENST00000564068 SPRYD3Q8NCJ5 442 aa16.4■□□□□ 0.22
COMMD4-209ENST00000564068 IL27Q8NEV9 243 aa16.4■□□□□ 0.22
COMMD4-209ENST00000564068 SLKQ9H2G2 1235 aaPredicted RBP16.4■□□□□ 0.22
COMMD4-209ENST00000564068 DCAF11Q8TEB1 546 aa16.39■□□□□ 0.21
COMMD4-209ENST00000564068 FRAT1Q92837 279 aaPredicted RBP16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms