RNA–Protein interactions for RNA: ENST00000560236.1

LRRC28-218, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 703 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-218ENST00000560236 RASEFQ8IZ41 740 aa12.38□□□□□ -0.43
LRRC28-218ENST00000560236 MS4A3Q96HJ5 214 aa12.37□□□□□ -0.43
LRRC28-218ENST00000560236 FBXO3Q9UK99 471 aa12.35□□□□□ -0.43
LRRC28-218ENST00000560236 KIF12Q96FN5 646 aa12.31□□□□□ -0.44
LRRC28-218ENST00000560236 NUBP1P53384 320 aa12.28□□□□□ -0.44
LRRC28-218ENST00000560236 MAP3K13O43283 966 aa12.26□□□□□ -0.45
LRRC28-218ENST00000560236 ASTLQ6HA08 431 aaPredicted RBP12.26□□□□□ -0.45
LRRC28-218ENST00000560236 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
LRRC28-218ENST00000560236 ATMINO43313 823 aaPredicted RBP12.24□□□□□ -0.45
LRRC28-218ENST00000560236 FAM212AQ96EL1 285 aa12.23□□□□□ -0.45
LRRC28-218ENST00000560236 VASPP50552 380 aaPredicted RBP12.19□□□□□ -0.46
LRRC28-218ENST00000560236 SLC39A7Q92504 469 aa12.18□□□□□ -0.46
LRRC28-218ENST00000560236 METRNQ9UJH8 293 aa12.18□□□□□ -0.46
LRRC28-218ENST00000560236 TRPC6Q9Y210 931 aa12.17□□□□□ -0.46
LRRC28-218ENST00000560236 C7P10643 843 aa12.16□□□□□ -0.46
LRRC28-218ENST00000560236 ATN1P54259 1190 aaPredicted RBP12.16□□□□□ -0.46
LRRC28-218ENST00000560236 BMP2KQ9NSY1 1161 aaPredicted RBP12.16□□□□□ -0.46
LRRC28-218ENST00000560236 PCDHB13Q9Y5F0 798 aa12.16□□□□□ -0.46
LRRC28-218ENST00000560236 SGIP1Q9BQI5 828 aa12.15□□□□□ -0.46
LRRC28-218ENST00000560236 POTEB2H3BUK9 544 aa12.14□□□□□ -0.47
LRRC28-218ENST00000560236 TIE1P35590 1138 aa12.14□□□□□ -0.47
LRRC28-218ENST00000560236 KLHL34Q8N239 644 aa12.14□□□□□ -0.47
LRRC28-218ENST00000560236 DCAF8Q5TAQ9 597 aa12.13□□□□□ -0.47
LRRC28-218ENST00000560236 OTUD5Q96G74 571 aa12.09□□□□□ -0.47
LRRC28-218ENST00000560236 TTLL13PA6NNM8 815 aa12.08□□□□□ -0.48
LRRC28-218ENST00000560236 IFNL1Q8IU54 200 aa12.08□□□□□ -0.48
LRRC28-218ENST00000560236 PYGBP11216 843 aa12.04□□□□□ -0.48
LRRC28-218ENST00000560236 GSE1Q14687 1217 aa12.01□□□□□ -0.49
LRRC28-218ENST00000560236 TRIM35Q9UPQ4 493 aa12.01□□□□□ -0.49
LRRC28-218ENST00000560236 TMEM106CQ9BVX2 250 aa12□□□□□ -0.49
LRRC28-218ENST00000560236 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
LRRC28-218ENST00000560236 SEC24BO95487 1268 aa11.98□□□□□ -0.49
LRRC28-218ENST00000560236 MAMSTRQ6ZN01 415 aa11.98□□□□□ -0.49
LRRC28-218ENST00000560236 POTEFA5A3E0 1075 aa11.97□□□□□ -0.49
LRRC28-218ENST00000560236 IER5LQ5T953 404 aa11.96□□□□□ -0.49
LRRC28-218ENST00000560236 IFNLR1Q8IU57 520 aaPredicted RBP11.96□□□□□ -0.49
LRRC28-218ENST00000560236 PCDHB8Q9UN66 801 aa11.95□□□□□ -0.5
LRRC28-218ENST00000560236 SPOCK2Q92563 424 aa11.94□□□□□ -0.5
LRRC28-218ENST00000560236 COLQQ9Y215 455 aaPredicted RBP11.94□□□□□ -0.5
LRRC28-218ENST00000560236 SCUBE2Q9NQ36 999 aa11.92□□□□□ -0.5
LRRC28-218ENST00000560236 CHRM1P11229 460 aaPredicted RBP11.88□□□□□ -0.51
LRRC28-218ENST00000560236 ZNF467Q7Z7K2 595 aaPredicted RBP11.88□□□□□ -0.51
LRRC28-218ENST00000560236 CIZ1Q9ULV3 898 aaPredicted RBP11.87□□□□□ -0.51
LRRC28-218ENST00000560236 PLCG2P16885 1265 aa11.85□□□□□ -0.51
LRRC28-218ENST00000560236 IRX5P78411 483 aaPredicted RBP11.81□□□□□ -0.52
LRRC28-218ENST00000560236 OCEL1Q9H607 264 aa11.78□□□□□ -0.52
LRRC28-218ENST00000560236 PSEN1P49768 467 aa11.77□□□□□ -0.53
LRRC28-218ENST00000560236 GOLGA2Q08379 1002 aa11.77□□□□□ -0.53
LRRC28-218ENST00000560236 PDAP1Q13442 181 aaKnown RBP11.74□□□□□ -0.53
LRRC28-218ENST00000560236 MKRN3Q13064 507 aaKnown RBP11.73□□□□□ -0.53
LRRC28-218ENST00000560236 POTEMA6NI47 508 aa11.72□□□□□ -0.53
LRRC28-218ENST00000560236 FAM163AQ96GL9 167 aaPredicted RBP11.72□□□□□ -0.53
LRRC28-218ENST00000560236 POTEGQ6S5H5 508 aa11.71□□□□□ -0.53
LRRC28-218ENST00000560236 TRIM41Q8WV44 630 aa11.7□□□□□ -0.54
LRRC28-218ENST00000560236 SLAIN1Q8ND83 568 aa11.69□□□□□ -0.54
LRRC28-218ENST00000560236 PDCD7Q8N8D1 485 aaKnown RBP11.66□□□□□ -0.54
LRRC28-218ENST00000560236 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.66□□□□□ -0.54
LRRC28-218ENST00000560236 LCE2DQ5TA82 110 aaPredicted RBP11.64□□□□□ -0.55
LRRC28-218ENST00000560236 CABP2Q9NPB3 220 aa11.64□□□□□ -0.55
LRRC28-218ENST00000560236 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.62□□□□□ -0.55
LRRC28-218ENST00000560236 L3MBTL3Q96JM7 780 aaPredicted RBP11.6□□□□□ -0.55
LRRC28-218ENST00000560236 PLSCR2Q9NRY7 297 aa11.58□□□□□ -0.56
LRRC28-218ENST00000560236 C3orf67Q6ZVT6 689 aa11.57□□□□□ -0.56
LRRC28-218ENST00000560236 ILDR1Q86SU0 546 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-218ENST00000560236 RIOK3O14730 519 aaKnown RBP11.54□□□□□ -0.56
LRRC28-218ENST00000560236 PCDH10Q9P2E7 1040 aa11.54□□□□□ -0.56
LRRC28-218ENST00000560236 DPY19L2Q6NUT2 758 aa11.52□□□□□ -0.57
LRRC28-218ENST00000560236 RNF25Q96BH1 459 aaPredicted RBP11.52□□□□□ -0.57
LRRC28-218ENST00000560236 SNPHO15079 494 aa11.5□□□□□ -0.57
LRRC28-218ENST00000560236 ST18O60284 1047 aa11.5□□□□□ -0.57
LRRC28-218ENST00000560236 EFCAB3Q8N7B9 438 aa11.5□□□□□ -0.57
LRRC28-218ENST00000560236 G3V3G9 751 aa11.49□□□□□ -0.57
LRRC28-218ENST00000560236 VGFO15240 615 aaPredicted RBP11.48□□□□□ -0.57
LRRC28-218ENST00000560236 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-218ENST00000560236 ZFP91Q96JP5 570 aaPredicted RBP11.47□□□□□ -0.57
LRRC28-218ENST00000560236 BOLA1Q9Y3E2 137 aa11.47□□□□□ -0.57
LRRC28-218ENST00000560236 TMEM121BQ9BXQ6 578 aaPredicted RBP11.42□□□□□ -0.58
LRRC28-218ENST00000560236 TAOK2Q9UL54 1235 aa11.41□□□□□ -0.58
LRRC28-218ENST00000560236 SOX12O15370 315 aa11.4□□□□□ -0.58
LRRC28-218ENST00000560236 ECM2O94769 699 aaPredicted RBP11.39□□□□□ -0.59
LRRC28-218ENST00000560236 CDAN1Q8IWY9 1227 aa11.38□□□□□ -0.59
LRRC28-218ENST00000560236 MARVELD3Q96A59 401 aa11.35□□□□□ -0.59
LRRC28-218ENST00000560236 BCL11BQ9C0K0 894 aaPredicted RBP11.35□□□□□ -0.59
LRRC28-218ENST00000560236 PHF8Q9UPP1 1060 aa11.34□□□□□ -0.59
LRRC28-218ENST00000560236 PKD2Q13563 968 aa11.33□□□□□ -0.6
LRRC28-218ENST00000560236 STK24Q9Y6E0 443 aa11.33□□□□□ -0.6
LRRC28-218ENST00000560236 MICALL2Q8IY33 904 aa11.32□□□□□ -0.6
LRRC28-218ENST00000560236 MS4A4AQ96JQ5 239 aa11.32□□□□□ -0.6
LRRC28-218ENST00000560236 STK25O00506 426 aa11.3□□□□□ -0.6
LRRC28-218ENST00000560236 RGL2O15211 777 aa11.28□□□□□ -0.6
LRRC28-218ENST00000560236 EMP3P54852 163 aa11.28□□□□□ -0.6
LRRC28-218ENST00000560236 NLRP6P59044 892 aa11.28□□□□□ -0.6
LRRC28-218ENST00000560236 HOXB3P14651 431 aaPredicted RBP11.25□□□□□ -0.61
LRRC28-218ENST00000560236 ZNF710Q8N1W2 664 aa11.24□□□□□ -0.61
LRRC28-218ENST00000560236 FBXO22Q8NEZ5 403 aa11.24□□□□□ -0.61
LRRC28-218ENST00000560236 DOK7Q18PE1 504 aa11.23□□□□□ -0.61
LRRC28-218ENST00000560236 TMEM92Q6UXU6 159 aa11.22□□□□□ -0.61
LRRC28-218ENST00000560236 MFRPQ9BY79 579 aa11.22□□□□□ -0.61
LRRC28-218ENST00000560236 FAM205CA6NFA0 338 aa11.2□□□□□ -0.62
LRRC28-218ENST00000560236 RIMBP2O15034 1052 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms