RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 PAK3O75914 559 aaPredicted RBP11.55□□□□□ -0.56
USP3-211ENST00000559257 ITGAEP38570 1179 aa11.55□□□□□ -0.56
USP3-211ENST00000559257 IPO4Q8TEX9 1081 aaKnown RBP11.55□□□□□ -0.56
USP3-211ENST00000559257 CENPJQ9HC77 1338 aaPredicted RBP11.55□□□□□ -0.56
USP3-211ENST00000559257 BRPF3Q9ULD4 1205 aa11.54□□□□□ -0.56
USP3-211ENST00000559257 TULP1O00294 542 aaPredicted RBP11.53□□□□□ -0.56
USP3-211ENST00000559257 PLPPR3Q6T4P5 718 aa11.53□□□□□ -0.56
USP3-211ENST00000559257 PRDM4Q9UKN5 801 aa11.53□□□□□ -0.56
USP3-211ENST00000559257 DCAF8L2P0C7V8 631 aa11.51□□□□□ -0.57
USP3-211ENST00000559257 NEFMP07197 916 aa11.5□□□□□ -0.57
USP3-211ENST00000559257 IPO9Q96P70 1041 aaKnown RBP11.5□□□□□ -0.57
USP3-211ENST00000559257 HSP90AA1P07900 732 aaKnown RBP11.48□□□□□ -0.57
USP3-211ENST00000559257 NPM2Q86SE8 214 aaKnown RBP11.48□□□□□ -0.57
USP3-211ENST00000559257 DHX37Q8IY37 1157 aaKnown RBP11.48□□□□□ -0.57
USP3-211ENST00000559257 BBXQ8WY36 941 aaPredicted RBP11.48□□□□□ -0.57
USP3-211ENST00000559257 SAMD1Q6SPF0 538 aaPredicted RBP11.47□□□□□ -0.57
USP3-211ENST00000559257 GTF2E1P29083 439 aaPredicted RBP11.46□□□□□ -0.57
USP3-211ENST00000559257 ZBTB47Q9UFB7 747 aaPredicted RBP11.45□□□□□ -0.58
USP3-211ENST00000559257 BCCIPQ9P287 314 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP3-211ENST00000559257 ANP32AP39687 249 aaKnown RBP11.43□□□□□ -0.58
USP3-211ENST00000559257 GSE1Q14687 1217 aa11.43□□□□□ -0.58
USP3-211ENST00000559257 CANXP27824 592 aaKnown RBP11.43□□□□□ -0.58
USP3-211ENST00000559257 PPM1GO15355 546 aaPredicted RBP11.41□□□□□ -0.58
USP3-211ENST00000559257 CHMP4BQ9H444 224 aaKnown RBP11.41□□□□□ -0.58
USP3-211ENST00000559257 CHRM1P11229 460 aaPredicted RBP11.41□□□□□ -0.58
USP3-211ENST00000559257 NCLP19338 710 aaKnown RBP11.41□□□□□ -0.58
USP3-211ENST00000559257 STAC3Q96MF2 364 aa11.41□□□□□ -0.58
USP3-211ENST00000559257 TEX2Q8IWB9 1127 aa11.4□□□□□ -0.58
USP3-211ENST00000559257 CNKSR2Q8WXI2 1034 aa11.4□□□□□ -0.58
USP3-211ENST00000559257 CNGB1Q14028 1251 aaPredicted RBP11.39□□□□□ -0.59
USP3-211ENST00000559257 FTSJ3Q8IY81 847 aaKnown RBP11.37□□□□□ -0.59
USP3-211ENST00000559257 PDCL3Q9H2J4 239 aa11.37□□□□□ -0.59
USP3-211ENST00000559257 RB1CC1Q8TDY2 1594 aa11.37□□□□□ -0.59
USP3-211ENST00000559257 RGS3P49796 1198 aa11.35□□□□□ -0.59
USP3-211ENST00000559257 PPP4R2Q9NY27 417 aa11.35□□□□□ -0.59
USP3-211ENST00000559257 HSP90B1P14625 803 aaKnown RBP11.34□□□□□ -0.59
USP3-211ENST00000559257 ZFP91Q96JP5 570 aaPredicted RBP11.34□□□□□ -0.59
USP3-211ENST00000559257 FBXO3Q9UK99 471 aa11.33□□□□□ -0.59
USP3-211ENST00000559257 ARID4BQ4LE39 1312 aaPredicted RBP11.33□□□□□ -0.6
USP3-211ENST00000559257 HAP1P54257 671 aaPredicted RBP11.32□□□□□ -0.6
USP3-211ENST00000559257 RSF1Q96T23 1441 aaPredicted RBP11.32□□□□□ -0.6
USP3-211ENST00000559257 NACADO15069 1562 aa11.31□□□□□ -0.6
USP3-211ENST00000559257 C14orf37Q86TY3 774 aa11.31□□□□□ -0.6
USP3-211ENST00000559257 VGFO15240 615 aaPredicted RBP11.3□□□□□ -0.6
USP3-211ENST00000559257 SCRIBQ14160 1630 aa11.29□□□□□ -0.6
USP3-211ENST00000559257 PNNQ9H307 717 aaKnown RBP11.27□□□□□ -0.61
USP3-211ENST00000559257 AMER1Q5JTC6 1135 aaPredicted RBP11.27□□□□□ -0.61
USP3-211ENST00000559257 SMAP1Q8IYB5 467 aaPredicted RBP11.27□□□□□ -0.61
USP3-211ENST00000559257 SECISBP2LQ93073 1101 aaKnown RBP11.26□□□□□ -0.61
USP3-211ENST00000559257 RRAGDQ9NQL2 400 aaPredicted RBP11.26□□□□□ -0.61
USP3-211ENST00000559257 WRNQ14191 1432 aaPredicted RBP eCLIP11.26□□□□□ -0.61
USP3-211ENST00000559257 EEA1Q15075 1411 aa11.26□□□□□ -0.61
USP3-211ENST00000559257 CLCN1P35523 988 aa11.25□□□□□ -0.61
USP3-211ENST00000559257 TPM2P07951 284 aa11.25□□□□□ -0.61
USP3-211ENST00000559257 FRAT1Q92837 279 aaPredicted RBP11.25□□□□□ -0.61
USP3-211ENST00000559257 EHMT2Q96KQ7 1210 aa11.24□□□□□ -0.61
USP3-211ENST00000559257 CCER2I3L3R5 266 aa11.23□□□□□ -0.61
USP3-211ENST00000559257 RNF216Q9NWF9 866 aaPredicted RBP11.23□□□□□ -0.61
USP3-211ENST00000559257 CDK11BP21127 795 aaKnown RBP11.23□□□□□ -0.61
USP3-211ENST00000559257 UTP14CQ5TAP6 766 aaKnown RBP11.23□□□□□ -0.61
USP3-211ENST00000559257 KCNH8Q96L42 1107 aa11.23□□□□□ -0.61
USP3-211ENST00000559257 POTEDQ86YR6 584 aa11.21□□□□□ -0.61
USP3-211ENST00000559257 MAP7D2Q96T17 732 aa11.21□□□□□ -0.62
USP3-211ENST00000559257 DCAF11Q8TEB1 546 aa11.2□□□□□ -0.62
USP3-211ENST00000559257 TMEM51Q9NW97 253 aa11.19□□□□□ -0.62
USP3-211ENST00000559257 LAS1LQ9Y4W2 734 aaKnown RBP11.17□□□□□ -0.62
USP3-211ENST00000559257 ZNF830Q96NB3 372 aaPredicted RBP11.16□□□□□ -0.62
USP3-211ENST00000559257 DDRGK1Q96HY6 314 aa11.16□□□□□ -0.62
USP3-211ENST00000559257 TAOK2Q9UL54 1235 aa11.15□□□□□ -0.62
USP3-211ENST00000559257 NFKBIBQ15653 356 aa11.13□□□□□ -0.63
USP3-211ENST00000559257 L1TD1Q5T7N2 865 aaKnown RBP11.13□□□□□ -0.63
USP3-211ENST00000559257 RGS22Q8NE09 1264 aa11.13□□□□□ -0.63
USP3-211ENST00000559257 ANP32BQ92688 251 aaKnown RBP11.13□□□□□ -0.63
USP3-211ENST00000559257 BAZ1AQ9NRL2 1556 aaPredicted RBP11.12□□□□□ -0.63
USP3-211ENST00000559257 FOXD1Q16676 465 aa11.12□□□□□ -0.63
USP3-211ENST00000559257 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP3-211ENST00000559257 NCAPD3P42695 1498 aa11.12□□□□□ -0.63
USP3-211ENST00000559257 DMTNQ08495 405 aa11.11□□□□□ -0.63
USP3-211ENST00000559257 MMP14P50281 582 aa11.09□□□□□ -0.63
USP3-211ENST00000559257 TAF3Q5VWG9 929 aa11.09□□□□□ -0.63
USP3-211ENST00000559257 PPP4R3BQ5MIZ7 849 aa11.09□□□□□ -0.63
USP3-211ENST00000559257 CNPY4Q8N129 248 aa11.09□□□□□ -0.63
USP3-211ENST00000559257 KIF20AO95235 890 aa11.08□□□□□ -0.64
USP3-211ENST00000559257 TRIM52Q96A61 297 aa11.08□□□□□ -0.64
USP3-211ENST00000559257 MTERF4Q7Z6M4 381 aaKnown RBP11.08□□□□□ -0.64
USP3-211ENST00000559257 PLCD3Q8N3E9 789 aa11.08□□□□□ -0.64
USP3-211ENST00000559257 CLGNO14967 610 aa11.07□□□□□ -0.64
USP3-211ENST00000559257 IRX6P78412 446 aaPredicted RBP11.07□□□□□ -0.64
USP3-211ENST00000559257 IRX3P78415 501 aaPredicted RBP11.07□□□□□ -0.64
USP3-211ENST00000559257 TNNT2P45379 298 aaPredicted RBP11.07□□□□□ -0.64
USP3-211ENST00000559257 TERF1P54274 439 aa11.07□□□□□ -0.64
USP3-211ENST00000559257 B4GALNT3Q6L9W6 998 aa11.06□□□□□ -0.64
USP3-211ENST00000559257 MROH2BQ7Z745 1585 aa11.05□□□□□ -0.64
USP3-211ENST00000559257 ARID3AQ99856 593 aa11.04□□□□□ -0.64
USP3-211ENST00000559257 ZHX1Q9UKY1 873 aaPredicted RBP11.04□□□□□ -0.64
USP3-211ENST00000559257 EIF4G1Q04637 1599 aaKnown RBP11.04□□□□□ -0.64
USP3-211ENST00000559257 GRIPAP1Q4V328 841 aa11.03□□□□□ -0.64
USP3-211ENST00000559257 KCNG1Q9UIX4 513 aa11.03□□□□□ -0.64
USP3-211ENST00000559257 GTPBP4Q9BZE4 634 aaKnown RBP11.02□□□□□ -0.65
USP3-211ENST00000559257 PTMAP06454 111 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms