RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 PELP1Q8IZL8 1130 aaKnown RBP15.57■□□□□ 0.08
USP3-211ENST00000559257 MYT1Q01538 1121 aa15.41■□□□□ 0.06
USP3-211ENST00000559257 TTBK1Q5TCY1 1321 aaPredicted RBP14.88□□□□□ -0.03
USP3-211ENST00000559257 NISCHQ9Y2I1 1504 aa14.35□□□□□ -0.11
USP3-211ENST00000559257 HRCP23327 699 aa14.24□□□□□ -0.13
USP3-211ENST00000559257 PRKCSHP14314 528 aaPredicted RBP14.19□□□□□ -0.14
USP3-211ENST00000559257 ERICH6Q7L0X2 663 aa14.1□□□□□ -0.15
USP3-211ENST00000559257 APLP2Q06481 763 aa14.03□□□□□ -0.16
USP3-211ENST00000559257 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
USP3-211ENST00000559257 SLC24A1O60721 1099 aa13.91□□□□□ -0.18
USP3-211ENST00000559257 BCL11AQ9H165 835 aa13.86□□□□□ -0.19
USP3-211ENST00000559257 FAM9AQ8IZU1 332 aaPredicted RBP13.64□□□□□ -0.23
USP3-211ENST00000559257 PPARGC1BQ86YN6 1023 aaKnown RBP13.56□□□□□ -0.24
USP3-211ENST00000559257 CENPBP07199 599 aaPredicted RBP13.55□□□□□ -0.24
USP3-211ENST00000559257 DAXXQ9UER7 740 aaPredicted RBP13.44□□□□□ -0.26
USP3-211ENST00000559257 ACIN1Q9UKV3 1341 aaKnown RBP13.37□□□□□ -0.27
USP3-211ENST00000559257 ANP32EQ9BTT0 268 aa13.24□□□□□ -0.29
USP3-211ENST00000559257 ZEB1P37275 1124 aaPredicted RBP13.22□□□□□ -0.29
USP3-211ENST00000559257 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
USP3-211ENST00000559257 GTF3C3Q9Y5Q9 886 aa13.19□□□□□ -0.3
USP3-211ENST00000559257 NEUROD1Q13562 356 aa13.15□□□□□ -0.31
USP3-211ENST00000559257 EIF5BO60841 1220 aaKnown RBP13.12□□□□□ -0.31
USP3-211ENST00000559257 AEBP2Q6ZN18 517 aaPredicted RBP13.04□□□□□ -0.32
USP3-211ENST00000559257 CSRNP3Q8WYN3 585 aa12.98□□□□□ -0.33
USP3-211ENST00000559257 UBE2Q2Q8WVN8 375 aa12.98□□□□□ -0.33
USP3-211ENST00000559257 CCDC180Q9P1Z9 1646 aa12.93□□□□□ -0.34
USP3-211ENST00000559257 MYO15BQ96JP2 1530 aa12.9□□□□□ -0.34
USP3-211ENST00000559257 DCAF1Q9Y4B6 1507 aa12.9□□□□□ -0.34
USP3-211ENST00000559257 ANO8Q9HCE9 1232 aaPredicted RBP12.76□□□□□ -0.37
USP3-211ENST00000559257 TRIM26Q12899 539 aaPredicted RBP12.74□□□□□ -0.37
USP3-211ENST00000559257 CLSPNQ9HAW4 1339 aa12.7□□□□□ -0.38
USP3-211ENST00000559257 ERICH6BQ5W0A0 696 aa12.67□□□□□ -0.38
USP3-211ENST00000559257 PLEKHG5O94827 1062 aa12.66□□□□□ -0.38
USP3-211ENST00000559257 MYT1LQ9UL68 1186 aa12.65□□□□□ -0.38
USP3-211ENST00000559257 PODXL2Q9NZ53 605 aa12.62□□□□□ -0.39
USP3-211ENST00000559257 PKNOX2Q96KN3 472 aa12.61□□□□□ -0.39
USP3-211ENST00000559257 TSHZ2Q9NRE2 1034 aa12.61□□□□□ -0.39
USP3-211ENST00000559257 DIEXFQ68CQ4 756 aaKnown RBP12.51□□□□□ -0.41
USP3-211ENST00000559257 SALL2Q9Y467 1007 aaPredicted RBP12.49□□□□□ -0.41
USP3-211ENST00000559257 CHIC1Q5VXU3 224 aa12.38□□□□□ -0.43
USP3-211ENST00000559257 SUPT16HQ9Y5B9 1047 aaKnown RBP12.38□□□□□ -0.43
USP3-211ENST00000559257 NEFLP07196 543 aa12.35□□□□□ -0.43
USP3-211ENST00000559257 NCBP3Q53F19 620 aaKnown RBP12.35□□□□□ -0.43
USP3-211ENST00000559257 CCDC136Q96JN2 1154 aa12.33□□□□□ -0.44
USP3-211ENST00000559257 DEKP35659 375 aaKnown RBP12.3□□□□□ -0.44
USP3-211ENST00000559257 TRIM41Q8WV44 630 aa12.29□□□□□ -0.44
USP3-211ENST00000559257 RANGAP1P46060 587 aaPredicted RBP12.24□□□□□ -0.45
USP3-211ENST00000559257 ARXQ96QS3 562 aa12.24□□□□□ -0.45
USP3-211ENST00000559257 RBM19Q9Y4C8 960 aaKnown RBP12.21□□□□□ -0.46
USP3-211ENST00000559257 ZCCHC6Q5VYS8 1495 aaKnown RBP12.2□□□□□ -0.46
USP3-211ENST00000559257 FANCIQ9NVI1 1328 aa12.18□□□□□ -0.46
USP3-211ENST00000559257 YTHDC1Q96MU7 727 aaKnown RBP12.18□□□□□ -0.46
USP3-211ENST00000559257 PDIA4P13667 645 aaKnown RBP12.17□□□□□ -0.46
USP3-211ENST00000559257 MSH5O43196 834 aa12.17□□□□□ -0.46
USP3-211ENST00000559257 PDE4CQ08493 712 aa12.17□□□□□ -0.46
USP3-211ENST00000559257 GLIPR1L2Q4G1C9 344 aa12.17□□□□□ -0.46
USP3-211ENST00000559257 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.13□□□□□ -0.47
USP3-211ENST00000559257 FGD1P98174 961 aa12.1□□□□□ -0.47
USP3-211ENST00000559257 ZNF316A6NFI3 1004 aaPredicted RBP12.09□□□□□ -0.47
USP3-211ENST00000559257 KLHL34Q8N239 644 aa12.06□□□□□ -0.48
USP3-211ENST00000559257 ZMYND15Q9H091 742 aa12.04□□□□□ -0.48
USP3-211ENST00000559257 MIER1Q8N108 512 aa12.02□□□□□ -0.49
USP3-211ENST00000559257 AAMPQ13685 434 aa12□□□□□ -0.49
USP3-211ENST00000559257 CCER1Q8TC90 406 aaPredicted RBP11.98□□□□□ -0.49
USP3-211ENST00000559257 SHROOM4Q9ULL8 1493 aa11.98□□□□□ -0.49
USP3-211ENST00000559257 IL27Q8NEV9 243 aa11.98□□□□□ -0.49
USP3-211ENST00000559257 TAF7LQ5H9L4 462 aa11.97□□□□□ -0.49
USP3-211ENST00000559257 RSPH6AQ9H0K4 717 aa11.95□□□□□ -0.5
USP3-211ENST00000559257 C11orf95C9JLR9 678 aaPredicted RBP11.92□□□□□ -0.5
USP3-211ENST00000559257 RBM10P98175 930 aaKnown RBP11.91□□□□□ -0.5
USP3-211ENST00000559257 BCL11BQ9C0K0 894 aaPredicted RBP11.91□□□□□ -0.5
USP3-211ENST00000559257 LOC105371045A0A1W2PR82 267 aa11.9□□□□□ -0.5
USP3-211ENST00000559257 VSIG10Q8N0Z9 540 aa11.9□□□□□ -0.51
USP3-211ENST00000559257 SUPT5HO00267 1087 aaKnown RBP11.88□□□□□ -0.51
USP3-211ENST00000559257 A0A0U1RQG5 324 aaPredicted RBP11.86□□□□□ -0.51
USP3-211ENST00000559257 RTN4Q9NQC3 1192 aaKnown RBP11.86□□□□□ -0.51
USP3-211ENST00000559257 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
USP3-211ENST00000559257 TIMELESSQ9UNS1 1208 aa11.8□□□□□ -0.52
USP3-211ENST00000559257 RTL5Q5HYW3 569 aaPredicted RBP11.79□□□□□ -0.52
USP3-211ENST00000559257 ZNF326Q5BKZ1 582 aaKnown RBP11.76□□□□□ -0.53
USP3-211ENST00000559257 NOP58Q9Y2X3 529 aaKnown RBP11.75□□□□□ -0.53
USP3-211ENST00000559257 WASHC2CQ9Y4E1 1318 aa11.75□□□□□ -0.53
USP3-211ENST00000559257 FKBP8Q14318 412 aa11.74□□□□□ -0.53
USP3-211ENST00000559257 RSPH4AQ5TD94 716 aa11.74□□□□□ -0.53
USP3-211ENST00000559257 HOMEZQ8IX15 550 aa11.74□□□□□ -0.53
USP3-211ENST00000559257 WASHC2AQ641Q2 1341 aa11.73□□□□□ -0.53
USP3-211ENST00000559257 BCANQ96GW7 911 aa11.71□□□□□ -0.53
USP3-211ENST00000559257 RRP9O43818 475 aaKnown RBP11.7□□□□□ -0.54
USP3-211ENST00000559257 CDK11AQ9UQ88 783 aaPredicted RBP11.7□□□□□ -0.54
USP3-211ENST00000559257 NBR1Q14596 966 aa11.7□□□□□ -0.54
USP3-211ENST00000559257 BRD2P25440 801 aaKnown RBP11.68□□□□□ -0.54
USP3-211ENST00000559257 USP35Q9P2H5 1018 aa11.66□□□□□ -0.54
USP3-211ENST00000559257 FAM43AQ8N2R8 423 aa11.65□□□□□ -0.54
USP3-211ENST00000559257 HSP90AA2PQ14568 343 aaPredicted RBP11.61□□□□□ -0.55
USP3-211ENST00000559257 NAP1L5Q96NT1 182 aaPredicted RBP11.58□□□□□ -0.56
USP3-211ENST00000559257 NAP1L2Q9ULW6 460 aaPredicted RBP11.58□□□□□ -0.56
USP3-211ENST00000559257 ABCC9O60706 1549 aa11.57□□□□□ -0.56
USP3-211ENST00000559257 CALD1Q05682 793 aaKnown RBP11.56□□□□□ -0.56
USP3-211ENST00000559257 PAXIP1Q6ZW49 1069 aaPredicted RBP11.56□□□□□ -0.56
USP3-211ENST00000559257 CHMP4AQ9BY43 222 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms